Experiment set11IT085 for Pseudomonas putida KT2440

Compare to:

carbon source 3-O-methyl-glucose 50 mM

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +4.4 15.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_t29 +3.8 2.0 tRNA-Ala compare
PP_1650 +3.6 24.3 Sensor protein GacS compare
PP_1655 +3.5 8.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_2889 +3.4 7.7 putative Transmembrane regulator PrtR compare
PP_4099 +3.3 26.6 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4171 +3.1 12.2 conserved exported protein of unknown function compare
PP_0593 +2.7 0.7 putative ribosome-binding factor compare
PP_0848 +2.7 4.4 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_2121 +2.5 2.2 putative Lipoprotein compare
PP_0630 +2.5 1.5 DNA gyrase inhibitor YacG compare
PP_1142 +2.1 1.5 conserved protein of unknown function compare
PP_t11 +2.1 2.2 tRNA-Lys compare
PP_1113 +2.0 11.0 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0001 +2.0 1.0 probable chromosome-partitioning protein compare
PP_2210 +2.0 2.7 LysR family transcriptional regulator compare
PP_4879 +2.0 3.1 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_3831 +1.9 4.5 conserved protein of unknown function compare
PP_5145 +1.9 16.9 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2028 +1.8 3.2 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_5338 +1.8 2.3 aspartate ammonia-lyase compare
PP_2336 +1.8 1.1 aconitate hydratase 1 compare
PP_3551 +1.8 2.0 DNA-binding response regulator, LuxR family compare
PP_1824 +1.7 0.6 Smr domain protein compare
PP_3903 +1.7 1.7 conserved protein of unknown function compare
PP_4373 +1.7 8.4 Transcriptional regulator FleQ compare
PP_2337 +1.7 0.8 aconitate isomerase compare
PP_5483 +1.7 2.4 conserved protein of unknown function compare
PP_1428 +1.7 1.5 Sigma factor AlgU negative regulatory protein compare
PP_1742 +1.7 2.8 conserved inner membrane protein of unknown function compare
PP_1783 +1.7 0.8 dTDP-glucose pyrophosphorylase compare
PP_0833 +1.6 0.8 queuine tRNA-ribosyltransferase compare
PP_5706 +1.6 2.0 Sec translocation complex - SecG subunit compare
PP_3248 +1.6 1.2 Dyp-type peroxidase family protein compare
PP_5717 +1.6 1.5 conserved protein of unknown function compare
PP_1215 +1.6 0.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_0719 +1.6 0.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0856 +1.6 1.1 conserved lipoprotein of unknown function compare
PP_2000 +1.6 1.2 amidophosphoribosyl transferase compare
PP_1454 +1.5 2.0 conserved protein of unknown function compare
PP_4999 +1.5 0.7 dihydroorotase-like protein compare
PP_4124 +1.5 1.2 NADH-quinone oxidoreductase subunit G compare
PP_4122 +1.5 0.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4129 +1.5 0.8 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5309 +1.5 0.7 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4874 +1.5 0.6 50S ribosomal protein L9 compare
PP_4532 +1.5 1.3 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4799 +1.5 0.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3971 +1.5 1.7 conserved protein of unknown function compare
PP_3409 +1.5 1.9 putative Cobalamin biosynthesis protein cobE compare
PP_2499 +1.5 1.4 conserved protein of unknown function compare
PP_1788 +1.5 3.0 conserved protein of unknown function compare
PP_5053 +1.5 4.9 Protein-export protein SecB compare
PP_1994 +1.5 0.9 tRNA pseudouridine (38-40)synthase compare
PP_4517 +1.5 1.2 conserved protein of unknown function compare
PP_0959 +1.4 1.7 phospholipid ABC transporter compare
PP_2568 +1.4 1.1 Ring-cleaving dioxygenase compare
PP_2025 +1.4 2.6 Exonuclease SbcD compare
PP_4121 +1.4 1.9 NADH-quinone oxidoreductase subunit C/D compare
PP_5240 +1.4 3.0 Response regulator compare
PP_4131 +1.4 2.0 NADH-quinone oxidoreductase subunit N compare
PP_0126 +1.4 4.4 Cytochrome c4 compare
PP_1353 +1.4 0.8 conserved membrane protein of unknown function compare
PP_2972 +1.4 2.9 conserved protein of unknown function compare
PP_0063 +1.4 2.0 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5310 +1.4 3.1 junction-specific ATP-dependent DNA helicase compare
PP_1903 +1.4 2.7 putative phosphotyrosine-protein phosphatase compare
PP_3378 +1.4 1.8 putative 2-ketogluconokinase compare
PP_4814 +1.3 2.1 ATP-dependent protease La domain protein compare
PP_4769 +1.3 2.7 conserved protein of unknown function compare
PP_0628 +1.3 2.2 conserved protein of unknown function compare
PP_4223 +1.3 1.5 diaminobutyrate-2-oxoglutarate transaminase compare
PP_1468 +1.3 0.9 Tyrosine recombinase XerD compare
PP_5028 +1.3 2.0 proline iminopeptidase compare
PP_4253 +1.3 1.7 cytochrome c oxidase subunit, cbb3-type compare
PP_4895 +1.3 1.3 tRNA dimethylallyltransferase compare
PP_4722 +1.3 3.2 Transcription elongation factor GreA compare
PP_0509 +1.3 2.7 conserved protein of unknown function compare
PP_4993 +1.3 2.6 Glutathione synthetase compare
PP_4693 +1.3 2.5 RNA polymerase-binding transcription factor DksA compare
PP_1734 +1.3 0.8 Probable septum site-determining protein MinC compare
PP_4836 +1.3 1.6 conserved exported protein of unknown function compare
PP_2857 +1.3 1.3 conserved exported protein of unknown function compare
PP_1654 +1.2 2.0 cysteine synthase B compare
PP_1629 +1.2 1.1 Protein RecA compare
PP_2976 +1.2 1.0 putative transposase compare
PP_4910 +1.2 0.7 conserved protein of unknown function compare
PP_4004 +1.2 0.8 DNA translocase FtsK compare
PP_0166 +1.2 6.9 HlyD family secretion protein compare
PP_0691 +1.2 0.8 Glutamate 5-kinase compare
PP_1270 +1.2 3.8 Transcriptional regulator, LysR family compare
PP_1048 +1.2 0.6 putative protein secretion protein for export compare
PP_4710 +1.2 5.6 tRNA pseudouridine 55 synthase compare
PP_5201 +1.2 3.3 conserved protein of unknown function, UPF0149 family compare
PP_5157 +1.2 3.2 conserved exported protein of unknown function compare
PP_4228 +1.2 2.1 conserved protein of unknown function compare
PP_5686 +1.2 1.4 protein of unknown function compare
PP_4126 +1.2 0.9 NADH-quinone oxidoreductase subunit I compare
PP_0574 +1.2 7.0 DNA-binding response regulator, LuxR family compare
PP_4341 +1.2 4.4 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_5712 +1.2 2.1 conserved protein of unknown function compare
PP_4356 +1.2 3.3 Flagellar protein FliO compare
PP_3926 +1.2 1.0 short-chain dehydrogenase compare
PP_2475 +1.2 2.5 Transcriptional regulator, TetR family compare
PP_3434 +1.2 1.8 conserved protein of unknown function compare
PP_1124 +1.2 1.5 conserved membrane protein of unknown function compare
PP_0086 +1.1 0.8 conserved protein of unknown function compare
PP_0725 +1.1 3.3 conserved hypothetical TPR repeat protein compare
PP_4642 +1.1 0.8 Cyclic diguanosine monophosphate-binding protein compare
PP_2341 +1.1 1.3 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4100 +1.1 4.4 Transcriptional regulator, Cro/CI family compare
PP_3320 +1.1 1.4 conserved protein of unknown function compare
PP_4804 +1.1 0.7 RlpA-like lipoprotein compare
PP_5522 +1.1 2.6 protein of unknown function compare
PP_4519 +1.1 5.9 Agglutination protein compare
PP_2462 +1.1 2.0 conserved protein of unknown function compare
PP_3806 +1.1 1.1 Hydrolase, isochorismatase family compare
PP_2864 +1.1 2.0 conserved protein of unknown function compare
PP_4120 +1.1 0.7 NADH-quinone oxidoreductase subunit B compare
PP_0553 +1.1 3.0 Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system compare
PP_2455 +1.1 3.9 ribose ABC transporter - ATP-binding subunit compare
PP_1268 +1.1 1.6 putative HtrA suppressor protein sohA compare
PP_0355 +1.1 1.9 Response regulator compare
PP_2898 +1.1 1.0 conserved exported protein of unknown function compare
PP_2550 +1.1 1.7 putative transcriptional regulatory protein compare
PP_1214 +1.1 0.9 putative transcriptional regulatory protein compare
PP_2087 +1.1 1.7 CmpX protein compare
PP_4629 +1.1 2.9 Sensory box protein compare
PP_4760 +1.1 3.1 Alcohol dehydrogenase, zinc-containing compare
PP_5146 +1.1 5.2 RNA pyrophosphohydrolase compare
PP_4989 +1.1 2.3 Protein PilJ compare
PP_0168 +1.0 7.9 putative surface adhesion protein compare
PP_4880 +1.0 2.8 exoribonuclease R compare
PP_1036 +1.0 3.8 membrane-bound lytic murein transglycosylase F compare
PP_4964 +1.0 1.1 D-erythrose 4-phosphate dehydrogenase compare
PP_0393 +1.0 0.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2616 +1.0 2.9 conserved protein of unknown function compare
PP_2615 +1.0 1.3 hemolysin-coregulated protein compare
PP_4419 +1.0 1.9 transposase compare
PP_0938 +1.0 4.8 conserved protein of unknown function compare
PP_4559 +1.0 2.5 peptide deformylase compare
PP_3770 +1.0 1.2 conserved protein of unknown function compare
PP_2655 +1.0 1.9 conserved protein of unknown function compare
PP_4938 +1.0 3.3 putative Glycosyl transferase compare
PP_5557 +1.0 1.7 protein of unknown function compare
PP_2378 +1.0 1.1 Fe/S biogenesis protein NfuA compare
PP_2160 +1.0 1.8 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_4139 +1.0 2.8 conserved protein of unknown function compare
PP_1808 +1.0 1.1 glucose-6-phosphate isomerase compare
PP_2573 +1.0 2.3 conserved protein of unknown function compare
PP_2402 +1.0 0.6 putative Sensor histidine kinase compare
PP_3013 +1.0 1.9 conserved protein of unknown function compare
PP_0167 +1.0 6.5 Toxin secretion ATP-binding protein compare
PP_0960 +1.0 1.6 phospholipid ABC transporter binding protein compare
PP_4892 +1.0 1.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5350 +1.0 1.3 Transcriptional regulator, RpiR family compare
PP_5229 +1.0 1.5 conserved protein of unknown function compare
PP_4902 +1.0 1.5 Oligoribonuclease compare
PP_5279 +1.0 1.5 conserved protein of unknown function compare
PP_2387 +1.0 1.8 conserved protein of unknown function compare
PP_2118 +1.0 1.5 conserved protein of unknown function compare
PP_1011 +1.0 4.0 glucokinase compare
PP_5598 +1.0 1.3 conserved protein of unknown function compare
PP_2999 +1.0 0.9 Glyoxalase family protein compare
PP_5574 +1.0 2.7 conserved protein of unknown function compare
PP_3398 +0.9 1.7 putative Curli fiber surface-exposed nucleator CsgB compare
PP_0065 +0.9 0.6 NAD-binding component of TrK potassium transporter compare
PP_4706 +0.9 3.1 conserved protein of unknown function compare
PP_1153 +0.9 1.2 putative lipoprotein compare
PP_5045 +0.9 2.2 tRNA sulfurtransferase compare
PP_2101 +0.9 2.7 DNA-binding response regulator in two-component regulatory system with EvgS compare
PP_0805 +0.9 4.3 Outer membrane efflux protein compare
PP_2253 +0.9 0.6 Transcriptional regulator, GntR family compare
PP_5230 +0.9 1.4 Tyrosine recombinase XerC compare
PP_4560 +0.9 2.7 putative Ribonuclease BN compare
PP_0165 +0.9 5.7 GGDEF domain protein compare
PP_0755 +0.9 2.2 conserved protein of unknown function compare
PP_0152 +0.9 1.4 conserved exported protein of unknown function compare
PP_2090 +0.9 1.3 Uroporphyrinogen-III C-methyltransferase compare
PP_1272 +0.9 4.1 putative Multidrug efflux MFS membrane fusion protein compare
PP_0007 +0.9 0.8 conserved hypothetical protein compare
PP_3726 +0.9 1.0 Enoyl-CoA hydratase/isomerase family protein compare
PP_5582 +0.9 1.1 conserved protein of unknown function compare
PP_2269 +0.9 2.5 putative N-acetylmuramoyl-L-alanine amidase compare
PP_2373 +0.9 1.5 conserved protein of unknown function compare
PP_4734 +0.9 3.2 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_1623 +0.9 4.7 RNA polymerase, sigma S (sigma 38) factor compare
PP_1999 +0.9 0.9 membrane protein required for colicin V production compare
PP_1568 +0.9 0.7 conserved protein of unknown function compare
PP_3749 +0.9 2.0 conserved protein of unknown function compare
PP_4265 +0.9 1.6 DNA-binding transcriptional dual regulator compare
PP_1112 +0.9 4.5 conserved membrane protein of unknown function compare
PP_0679 +0.9 2.5 conserved exported protein of unknown function compare
PP_2509 +0.9 2.2 conserved protein of unknown function compare
PP_2404 +0.9 2.0 conserved exported protein of unknown function compare
PP_5084 +0.9 4.2 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_3635 +0.9 2.5 putative Sulfonate ABC transporter, permease protein compare
PP_2695 +0.9 1.7 Transcriptional regulator, LysR family compare
PP_2927 +0.9 1.7 conserved protein of unknown function compare
PP_2740 +0.9 1.2 Transcriptional regulator, MerR family compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source 3-O-methyl-glucose in Pseudomonas putida KT2440

For carbon source 3-O-methyl-glucose across organisms