Experiment set11IT084 for Pseudomonas putida KT2440

Compare to:

carbon source 3-O-methyl-glucose 10 mM

200 most important genes:

  gene name fitness t score description  
PP_0290 -5.2 -3.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0422 -5.1 -3.5 Indole-3-glycerol phosphate synthase compare
PP_0787 -4.9 -3.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5098 -4.9 -4.7 methionine biosynthesis protein MetW compare
PP_4678 -4.9 -9.9 Ketol-acid reductoisomerase compare
PP_3790 -4.8 -8.1 diaminopimelate epimerase compare
PP_3511 -4.8 -5.6 Branched-chain-amino-acid aminotransferase compare
PP_1985 -4.7 -3.3 3-isopropylmalate dehydratase large subunit compare
PP_0967 -4.7 -5.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1988 -4.7 -4.6 3-isopropylmalate dehydrogenase compare
PP_0293 -4.7 -2.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5104 -4.6 -4.5 thiazole synthase compare
PP_1348 -4.6 -3.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4680 -4.6 -8.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5097 -4.4 -9.0 homoserine O-acetyltransferase compare
PP_0965 -4.3 -8.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0966 -4.3 -5.1 Histidinol dehydrogenase compare
PP_5348 -4.2 -10.1 Transcriptional regulator, LysR family compare
PP_5303 -4.0 -3.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2168 -4.0 -4.8 Transaldolase compare
PP_1109 -4.0 -12.6 Transcriptional regulator, GntR family compare
PP_0420 -3.9 -11.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1110 -3.9 -2.7 serine acetyltransferase compare
PP_2001 -3.9 -9.3 O-succinylhomoserine sulfhydrylase compare
PP_0417 -3.9 -14.9 Anthranilate synthase component 1 compare
PP_4890 -3.9 -4.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_5346 -3.8 -8.0 pyruvate carboxylase subunit B compare
PP_4922 -3.8 -13.1 Phosphomethylpyrimidine synthase compare
PP_0292 -3.7 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1088 -3.7 -5.1 Argininosuccinate synthase compare
PP_2388 -3.6 -5.8 Transporter, LysE family compare
PP_5289 -3.6 -2.5 Acetylglutamate kinase compare
PP_2646 -3.6 -2.7 conserved protein of unknown function compare
PP_1231 -3.6 -2.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5347 -3.6 -11.3 pyruvate carboxylase subunit A compare
PP_4679 -3.6 -2.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1995 -3.5 -4.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0421 -3.4 -8.8 Anthranilate phosphoribosyltransferase compare
PP_2433 -3.4 -2.1 conserved protein of unknown function compare
PP_1111 -3.3 -8.1 putative Synthetase compare
PP_0735 -3.2 -1.4 molybdopterin-synthase adenylyltransferase compare
PP_2371 -3.2 -3.1 Sulphite reductase hemoprotein, beta subunit compare
PP_5076 -3.2 -17.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_2370 -3.2 -2.9 conserved protein of unknown function compare
PP_1079 -3.2 -2.2 Ornithine carbamoyltransferase compare
PP_5155 -3.1 -6.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2645 -3.0 -9.4 magnesium transporter, ATP-dependent compare
PP_1233 -3.0 -2.9 sulfurtransferase compare
PP_2348 -3.0 -5.2 Sensor histidine kinase compare
PP_0362 -3.0 -11.2 Biotin synthase compare
PP_5075 -2.9 -10.2 glutamate synthase (NADPH) beta subunit compare
PP_0289 -2.8 -6.6 Imidazoleglycerol-phosphate dehydratase compare
PP_3376 -2.8 -5.2 putative phosphonate dehydrogenase compare
PP_5185 -2.8 -3.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2714 -2.7 -6.5 Sensor histidine kinase compare
PP_5128 -2.7 -5.8 Dihydroxy-acid dehydratase compare
PP_1986 -2.7 -1.9 3-isopropylmalate dehydratase small subunit compare
PP_0082 -2.6 -1.8 tryptophan synthase alpha chain compare
PP_1366 -2.6 -1.5 Transcriptional regulator MvaT, P16 subunit compare
PP_3411 -2.6 -1.1 conserved protein of unknown function compare
PP_4909 -2.6 -2.5 phosphoserine phosphatase compare
PP_2390 -2.5 -5.5 Transcriptional regulator, LysR family compare
PP_4782 -2.4 -2.8 Phosphomethylpyrimidine kinase compare
PP_2327 -2.4 -3.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5015 -2.4 -2.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1025 -2.3 -7.7 2-isopropylmalate synthase compare
PP_3999 -2.3 -4.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0022 -2.2 -1.1 hypothetical protein compare
PP_4917 -2.2 -3.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3245 -2.2 -0.9 conserved protein of unknown function compare
PP_4268 -2.1 -0.9 nucleoid-associated broad specificity regulator compare
PP_1063 -2.0 -7.8 DNA-binding transcriptional regulator, homocysteine-binding compare
PP_0274 -2.0 -1.2 putative transcriptional regulator containing HTH domain compare
PP_0291 -2.0 -3.2 conserved protein of unknown function compare
PP_4684 -1.9 -4.7 conserved protein of unknown function with kinase-like domain compare
PP_5090 -1.9 -1.7 putative cell division protein compare
PP_0276 -1.9 -1.3 Transcriptional regulator, Cro/CI family compare
PP_3505 -1.9 -1.9 conserved protein of unknown function compare
PP_1528 -1.8 -1.3 conserved protein of unknown function compare
PP_4213 -1.8 -2.5 putative dipeptidase compare
PP_2784 -1.8 -3.3 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2142 -1.8 -1.8 Cell division inhibitor SulA compare
PP_4109 -1.7 -2.5 conserved protein of unknown function compare
PP_4238 -1.7 -2.2 conserved protein of unknown function compare
PP_0879 -1.7 -4.4 dipeptide ABC transporter - putative ATP binding subunit compare
PP_4897 -1.7 -3.3 N-acetylmuramoyl-L-alanine amidase compare
PP_4045 -1.7 -2.6 conserved protein of unknown function compare
PP_1731 -1.6 -3.5 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_0125 -1.6 -2.4 putative cytochrome c-type protein compare
PP_4723 -1.6 -1.9 Carbamoyl-phosphate synthase large chain compare
PP_4364 -1.6 -4.0 putative Anti-sigma F factor antagonist compare
PP_5083 -1.6 -2.5 putative Type IV pili biogenesis protein PilM compare
PP_1426 -1.6 -7.0 L-aspartate oxidase compare
PP_4835 -1.6 -1.9 conserved exported protein of unknown function compare
PP_2650 -1.6 -2.4 putative 4-hydroxybutyrate dehydrogenase compare
PP_0945 -1.6 -2.2 conserved protein of unknown function compare
PP_3637 -1.5 -1.4 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1142 -1.5 -0.6 conserved protein of unknown function compare
PP_0261 -1.5 -3.7 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0141 -1.5 -5.0 putative ABC transporter, ATP-binding protein compare
PP_5241 -1.5 -2.6 DNA-binding response regulator, LuxR family compare
PP_1009 -1.5 -4.3 glyceraldehyde-3-phosphate dehydrogenase compare
PP_5328 -1.5 -3.8 putative phosphate transport system permease protein compare
PP_0048 -1.5 -0.9 conserved protein of unknown function compare
PP_3532 -1.4 -1.7 Transcriptional regulator, AsnC family compare
PP_1269 -1.4 -1.5 Universal stress protein family compare
PP_0506 -1.4 -7.8 putative ABC efflux transporter, permease protein compare
PP_4828 -1.4 -0.7 Precorrin-8X methylmutase compare
PP_4940 -1.4 -4.8 Putative glycosyltransferase compare
PP_4997 -1.4 -1.3 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_0184 -1.4 -1.6 Argininosuccinate lyase compare
PP_1873 -1.4 -3.1 Peptide methionine sulfoxide reductase MsrB compare
PP_4937 -1.4 -2.5 toluene tolerance protein compare
PP_2060 -1.3 -1.6 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_1122 -1.3 -1.5 OmpA family protein compare
PP_3946 -1.3 -0.5 HTH-type transcriptional repressor NicR compare
PP_0910 -1.3 -3.7 conserved exported protein of unknown function compare
PP_5628 -1.3 -1.8 conserved protein of unknown function compare
PP_5652 -1.3 -1.0 conserved protein of unknown function, phage origin compare
PP_3649 -1.3 -2.8 Transcriptional regulator, GntR family compare
PP_3110 -1.3 -1.3 protein of unknown function compare
PP_4482 -1.3 -2.3 Transcriptional regulator, AraC family compare
PP_4136 -1.3 -1.2 Transcriptional regulator, LuxR family compare
PP_2494 -1.3 -3.5 conserved protein of unknown function compare
PP_3002 -1.3 -2.2 shikimate dehydrogenase-related enzyme compare
PP_4845 -1.3 -2.5 putative Urea ABC transporter, ATP-binding protein compare
PP_2931 -1.2 -2.4 conserved protein of unknown function compare
PP_3064 -1.2 -1.5 Phage tail protein compare
PP_0957 -1.2 -1.7 D-arabinose 5-phosphate isomerase compare
PP_5604 -1.2 -2.3 putative subtilisin-like serine protease compare
PP_2847 -1.2 -1.8 Urease accessory protein UreJ compare
PP_5495 -1.2 -2.6 protein of unknown function compare
PP_0978 -1.2 -1.3 conserved protein of unknown function compare
PP_0003 -1.2 -1.5 16S RNA methyltransferase compare
PP_1011 -1.2 -4.2 glucokinase compare
PP_4300 -1.2 -3.5 putative hydroxypyruvate reductase compare
PP_5317 -1.2 -1.7 Probable chorismate pyruvate-lyase compare
PP_1662 -1.1 -2.2 conserved protein of unknown function compare
PP_4961 -1.1 -0.8 putative Lipoprotein compare
PP_4060 -1.1 -6.7 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1322 -1.1 -0.6 putative Lipoprotein compare
PP_1253 -1.1 -4.0 Transcriptional regulator, ArsR family compare
PP_4695 -1.1 -5.7 Sensory box histidine kinase compare
PP_4929 -1.1 -3.4 Transcriptional regulator, LysR family compare
PP_2633 -1.1 -0.6 conserved protein of unknown function compare
PP_1550 -1.1 -3.0 Transcriptional regulator, Cro/CI family compare
PP_1513 -1.1 -1.6 Ribosomal RNA small subunit methyltransferase J compare
PP_3244 -1.1 -1.2 Magnesium transporter, MgtC family compare
PP_2018 -1.1 -2.5 adhesin-associated BNR repeat protein (from data) compare
PP_0951 -1.0 -3.4 Ribosome hibernation promoting factor compare
PP_5320 -1.0 -3.8 two-component system DNA-binding transcriptional dual response regulator PhoB compare
PP_1020 -1.0 -1.5 putative glucose-6-phosphate 1-epimerase compare
PP_1476 -1.0 -2.1 conserved protein of unknown function compare
PP_3903 -1.0 -0.6 conserved protein of unknown function compare
PP_2044 -1.0 -0.8 conserved inner membrane protein of unknown function compare
PP_3522 -1.0 -1.3 conserved protein of unknown function compare
PP_4789 -1.0 -2.1 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_5216 -1.0 -0.7 exopolyphosphatase compare
PP_0913 -1.0 -2.9 conserved exported protein of unknown function compare
PP_1397 -1.0 -1.4 conserved protein of unknown function compare
PP_3121 -1.0 -2.4 transcriptional regulator, LysR family compare
PP_5327 -1.0 -3.3 putative phosphate ABC transporter, permease subunit compare
PP_5321 -1.0 -3.8 two-component system sensory histidine kinase compare
PP_4916 -1.0 -1.8 putative esterase compare
PP_5486 -1.0 -1.2 conserved protein of unknown function compare
PP_5313 -1.0 -1.4 DNA-binding protein HU-alpha compare
PP_3034 -1.0 -2.8 putative Regulator protein compare
PP_0841 -1.0 -2.3 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_0035 -1.0 -2.2 putative bactoprenol-linked glycose transferase compare
PP_1503 -1.0 -2.1 conserved protein of unknown function compare
PP_2107 -1.0 -1.0 conserved protein of unknown function compare
PP_3917 -1.0 -2.0 conserved protein of unknown function compare
PP_1062 -1.0 -1.3 MutT/nudix family protein compare
PP_3471 -1.0 -2.0 conserved protein of unknown function compare
PP_2908 -1.0 -2.0 DNA-binding transcriptional repressor compare
PP_2575 -1.0 -1.6 conserved exported protein of unknown function compare
PP_0364 -1.0 -3.2 pimeloyl-[acp] methyl ester esterase compare
PP_5202 -1.0 -1.3 putative cell division protein compare
PP_1764 -0.9 -2.6 Phosphoglycolate phosphatase 2 compare
PP_0949 -0.9 -3.2 putative ATP-binding protein UPF0042 compare
PP_2328 -0.9 -1.8 Phosphoadenosine phosphosulfate reductase compare
PP_3365 -0.9 -0.7 Acetolactate synthase compare
PP_2326 -0.9 -4.3 Universal stress protein compare
PP_2256 -0.9 -2.4 Transcriptional regulator, Cro/CI family compare
PP_2716 -0.9 -2.1 arsenate reductase compare
PP_1829 -0.9 -1.3 Hydrolase, alpha/beta fold family compare
PP_5014 -0.9 -0.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_0891 -0.9 -2.2 conserved exported protein of unknown function compare
PP_5453 -0.9 -1.0 conserved protein of unknown function compare
PP_4159 -0.9 -1.2 Potassium-transporting ATPase C chain compare
PP_3861 -0.9 -2.4 Phage FluMu protein gp46 compare
PP_2122 -0.9 -1.8 molybdenum cofactor biosynthesis protein B compare
PP_1041 -0.9 -1.0 twin arginine protein export complex subunit compare
PP_5039 -0.9 -1.1 conserved protein of unknown function compare
PP_4707 -0.9 -1.4 OsmY-related protein compare
PP_0275 -0.9 -3.5 conserved protein of unknown function compare
PP_2414 -0.9 -0.7 conserved exported protein of unknown function compare
PP_2132 -0.9 -1.5 Universal stress protein compare
PP_3799 -0.9 -2.1 conserved exported protein of unknown function compare
PP_0440 -0.9 -1.3 Elongation factor Tu-A compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source 3-O-methyl-glucose in Pseudomonas putida KT2440

For carbon source 3-O-methyl-glucose across organisms