Experiment set11IT084 for Agrobacterium fabrum C58

Compare to:

LB with Cinnamic acid 1.25 mM

200 most important genes:

  gene name fitness t score description  
Atu3469 -3.0 -4.3 phosphoglyceromutase compare
Atu4148 -2.9 -8.2 UDP-glucuronic acid epimerase compare
Atu2577 -2.8 -18.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu2582 -2.7 -10.4 UDP-glucose/GDP-mannose dehydrogenase compare
Atu3739 -2.7 -5.1 phosphoglycerate kinase compare
Atu2585 -2.6 -8.6 hypothetical protein compare
Atu2590 -2.6 -13.1 hypothetical protein compare
Atu2592 -2.5 -7.0 hypothetical protein compare
Atu2591 -2.3 -11.0 glucosyltransferase compare
Atu2583 -2.3 -13.4 glycosyltransferase compare
Atu4149 -2.2 -10.2 UDP-glucose 6-dehydrogenase compare
Atu2584 -2.1 -6.8 hypothetical protein compare
Atu0422 -1.9 -3.5 ABC transporter, membrane spanning protein compare
Atu4217 -1.8 -2.9 TetR family transcriptional regulator compare
Atu4072 -1.6 -1.9 nodulation protein N compare
Atu3763 -1.4 -1.8 hypothetical protein compare
Atu0486 -1.3 -4.9 dihydroorotate dehydrogenase compare
Atu1086 -1.3 -8.7 MFS permease compare
Atu2207 -1.3 -3.9 two component sensor kinase compare
Atu0040 -1.3 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4317 -1.2 -2.2 TetR family transcriptional regulator compare
Atu1087 -1.2 -6.2 secretion protein compare
Atu4890 -1.2 -2.2 IS426 transposase compare
Atu2684 -1.2 -2.3 hypothetical protein compare
Atu0434 -1.2 -1.8 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0400 -1.1 -4.5 orotate phosphoribosyltransferase compare
Atu0184 -1.1 -3.3 glucokinase compare
Atu0025 -1.1 -1.8 hypothetical protein compare
Atu2692 -1.1 -3.8 intracellular septation protein compare
Atu2306 -1.1 -5.8 methionine aminopeptidase compare
Atu0977 -1.1 -4.7 serine protease DO-like protease compare
Atu0115 -1.1 -1.4 hypothetical protein compare
Atu0142 -1.0 -2.3 cytochrome o ubiquinol oxidase subunit II compare
Atu0999 -1.0 -5.5 magnesium transport protein compare
Atu0298 -1.0 -4.4 orotidine 5 compare
Atu0030 -1.0 -1.9 phosphocarrier protein HPr compare
Atu0399 -1.0 -4.9 dihydroorotase compare
Atu1354 -1.0 -1.5 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu4888 -1.0 -3.1 hypothetical protein compare
Atu3598 -1.0 -1.6 thiol:disulfide interchange protein compare
Atu2554 -1.0 -1.8 lysyl-tRNA synthetase compare
Atu4882 -0.9 -2.5 hypothetical protein compare
Atu0039 -0.9 -2.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu1030 -0.9 -1.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1307 -0.9 -4.0 dihydroorotase compare
Atu2799 -0.9 -3.9 precorrin-6x reductase compare
Atu4878 -0.9 -3.9 hypothetical protein compare
Atu0185 -0.9 -3.8 methylglyoxal synthase compare
Atu2800 -0.9 -3.3 precorrin-3B C17-methyltransferase compare
Atu0331 -0.9 -2.7 sigma-54 modulation protein compare
Atu0598 -0.9 -4.8 phosphogluconate dehydratase compare
Atu2270 -0.8 -2.0 ATP-dependent Clp protease, proteolytic subunit compare
Atu2824 -0.8 -3.4 hypothetical protein compare
Atu1308 -0.8 -3.4 aspartate carbamoyl transferase catalytic subunit compare
Atu1359 -0.8 -1.1 dnaK deletion suppressor protein compare
Atu8180 -0.8 -3.9 hypothetical protein compare
Atu4896 -0.8 -0.7 acetyltransferase compare
Atu8202 -0.8 -2.7 hypothetical protein compare
Atu2439 -0.8 -1.7 hypothetical protein compare
Atu1085 -0.8 -3.8 transcriptional regulator, MarR family compare
Atu2640 -0.7 -2.6 hypothetical protein compare
Atu0421 -0.7 -1.3 ABC transporter, membrane spanning protein compare
Atu0050 -0.7 -3.7 two component response regulator compare
Atu0777 -0.7 -0.9 hypothetical protein compare
Atu3008 -0.7 -0.8 hypothetical protein compare
Atu3010 -0.7 -4.0 hypothetical protein compare
Atu0784 -0.7 -2.7 hypothetical protein compare
Atu1645 -0.7 -4.0 ABC transporter, substrate binding protein compare
Atu1028 -0.7 -1.9 hypothetical protein compare
Atu1739 -0.7 -3.0 permease compare
Atu4884 -0.7 -2.8 hypothetical protein compare
Atu0051 -0.7 -3.6 two component sensor kinase compare
Atu3015 -0.7 -2.9 hypothetical protein compare
Atu1891 -0.7 -1.9 cobalamin biosynthesis protein compare
Atu1644 -0.7 -2.4 hypothetical protein compare
Atu1628 -0.7 -2.6 hypothetical protein compare
Atu0638 -0.7 -1.8 hypothetical protein compare
Atu2052 -0.7 -3.6 hypothetical protein compare
Atu2057 -0.7 -1.7 DNA helicase II compare
Atu2555 -0.6 -2.4 L-lysine 2,3-aminomutase compare
Atu0141 -0.6 -1.0 cytochrome O ubiquinol oxidase subunit I compare
Atu4893 -0.6 -2.7 hypothetical protein compare
Atu2028 -0.6 -1.8 transcriptional regulator, ArsR family compare
Atu0886 -0.6 -1.4 hypothetical protein compare
Atu3018 -0.6 -2.6 hypothetical protein compare
Atu1850 -0.6 -2.6 phosphoribosylformylglycinamidine synthetase II compare
Atu0566 -0.6 -1.4 hypothetical protein compare
Atu3023 -0.6 -3.8 sugar ABC transporter permease compare
Atu2831 -0.6 -2.4 glucose inhibited division protein A compare
Atu0013 -0.6 -3.1 NAD(P)H-flavin oxidoreductase compare
Atu2083 -0.6 -2.5 DNA repair protein RecN compare
Atu1140 -0.6 -3.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2793 -0.6 -2.6 cobyrinic acid a,c-diamide synthase compare
Atu1678 -0.6 -3.1 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu3663 -0.6 -1.3 hypothetical protein compare
Atu1714 -0.6 -1.2 exonuclease III compare
Atu2239 -0.6 -2.1 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu4792 -0.6 -1.2 hypothetical protein compare
Atu0029 -0.6 -3.2 S-adenosylhomocysteine hydrolase compare
Atu4686 -0.6 -1.5 hypothetical protein compare
Atu1204 -0.6 -2.8 potassium uptake protein compare
Atu1810 -0.6 -1.1 hypothetical protein compare
Atu1754 -0.6 -1.5 hypothetical protein compare
Atu2378 -0.6 -2.1 hypothetical protein compare
Atu3395 -0.6 -3.0 iron (III ABC transporter permease ABC transporter permease compare
Atu0659 -0.6 -2.8 NTP pyrophosphohydrolase, MutT family compare
Atu4887 -0.6 -2.6 hypothetical protein compare
Atu3579 -0.6 -1.9 lactoylglutathione lyase compare
Atu0031 -0.6 -1.0 PTS system, IIA component compare
Atu1646 -0.6 -2.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu1573 -0.6 -1.3 hypothetical protein compare
Atu3014 -0.6 -1.6 hypothetical protein compare
Atu2809 -0.6 -3.5 cobalamin biosynthesis protein compare
Atu3486 -0.6 -1.9 DeoR family transcriptional regulator compare
Atu0647 -0.6 -2.8 phosphoribosylamine--glycine ligase compare
Atu4541 -0.5 -2.1 carboxymuconolactone decarboxylase compare
Atu3013 -0.5 -2.1 hypothetical protein compare
Atu3020 -0.5 -3.4 GntR family transcriptional regulator compare
Atu2125 -0.5 -1.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu1677 -0.5 -1.7 queuine tRNA-ribosyltransferase compare
Atu0086 -0.5 -0.7 ribosome-binding factor A compare
Atu2728 -0.5 -2.5 beta (1-->2) glucan export ATP-binding protein compare
Atu4875 -0.5 -2.9 hypothetical protein compare
Atu1446 -0.5 -1.3 two component response regulator compare
Atu0972 -0.5 -2.0 lipA protein compare
Atu1364 -0.5 -2.3 ATP-dependent Clp protease, ATP-binding subunit compare
Atu8138 -0.5 -0.8 hypothetical protein compare
Atu4880 -0.5 -3.3 AraC family transcriptional regulator compare
Atu3022 -0.5 -3.4 sugar ABC transporter permease compare
Atu1759 -0.5 -3.5 L-serine dehydratase compare
Atu5160 -0.5 -1.8 transcriptional regulator protein compare
Atu2433 -0.5 -0.9 hypothetical protein compare
Atu1125 -0.5 -1.9 ABC transporter, membrane spanning protein compare
Atu0107 -0.5 -1.9 hypothetical protein compare
Atu3912 -0.5 -2.8 hypothetical protein compare
Atu4469 -0.5 -1.3 iron ABC transporter permease compare
Atu0912 -0.5 -0.9 Na+/H+ antiporter compare
Atu0947 -0.5 -1.4 transcriptional regulator, AsnC family compare
Atu2803 -0.5 -1.6 Cobalamin biosynthesis associated protein compare
Atu4879 -0.5 -2.9 hypothetical protein compare
Atu3518 -0.5 -2.9 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu0836 -0.5 -1.5 Glutathione-S-transferase compare
Atu0419 -0.5 -1.0 two component sensor kinase compare
Atu0971 -0.5 -1.9 two component sensor kinase compare
Atu2795 -0.5 -2.8 cobalamin biosynthetic protein compare
Atu3727 -0.5 -2.1 hypothetical protein compare
Atu1503 -0.5 -0.8 hypothetical protein compare
Atu4889 -0.5 -1.9 hypothetical protein compare
Atu4773 -0.5 -0.9 two component response regulator compare
Atu2797 -0.5 -3.1 cobalamin biosynthesis protein compare
Atu3016 -0.5 -2.6 phosphoglyceromutase compare
Atu1285 -0.5 -3.0 metal dependent hydrolase compare
Atu0062 -0.5 -2.8 transcriptional regulator, ROK family compare
Atu0660 -0.5 -2.8 hydrolase compare
Atu1801 -0.5 -1.3 hypothetical protein compare
Atu1619 -0.5 -1.3 protein-export membrane protein SECG compare
Atu0413 -0.5 -1.2 stress induced protein compare
Atu4869 -0.5 -1.6 hypothetical protein compare
Atu1439 -0.5 -1.1 hypothetical protein compare
Atu0496 -0.5 -2.3 hypothetical protein compare
Atu0124 -0.5 -1.8 hypothetical protein compare
Atu4068 -0.5 -1.0 sarcosine oxidase delta subunit compare
Atu0386 -0.4 -1.1 hypothetical protein compare
Atu0824 -0.4 -0.8 hypothetical protein compare
Atu2238 -0.4 -2.6 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu3024 -0.4 -3.3 sugar ABC transporter permease compare
Atu4666 -0.4 -2.5 HlyD family secretion protein compare
Atu0272 -0.4 -1.5 transcriptional regulator, MarR family compare
Atu3999 -0.4 -1.3 dithiobiotin synthetase compare
Atu4468 -0.4 -3.1 iron transport ABC transporter permease compare
Atu4877 -0.4 -2.7 short-chain dehydrogenase compare
Atu2787 -0.4 -0.8 hypothetical protein compare
Atu0257 -0.4 -2.9 hypothetical protein compare
Atu2376 -0.4 -2.0 hypothetical protein compare
Atu8170 -0.4 -1.5 hypothetical protein compare
Atu3019 -0.4 -2.2 hypothetical protein compare
Atu8190 -0.4 -1.7 hypothetical protein compare
Atu4471 -0.4 -3.1 ABC transporter substrate-binding protein compare
Atu4641 -0.4 -1.8 LysR family transcriptional regulator compare
Atu1679 -0.4 -1.0 peptidyl prolyl cis-trans isomerase compare
Atu0479 -0.4 -2.2 ABC transporter, substrate binding protein (amino acid) compare
Atu4530 -0.4 -1.9 TetR family transcriptional regulator compare
Atu1141 -0.4 -1.8 Phosphoribosylglycinamide synthetase compare
Atu4872 -0.4 -3.3 LysR family transcriptional regulator compare
Atu2249 -0.4 -0.7 hypothetical protein compare
Atu1099 -0.4 -2.3 hypothetical protein compare
Atu1647 -0.4 -2.6 ABC transporter, membrane spanning protein compare
Atu3121 -0.4 -0.7 cold shock protein compare
Atu1039 -0.4 -1.6 DNA repair protein RecO compare
Atu3006 -0.4 -1.4 hypothetical protein compare
Atu2807 -0.4 -2.1 cob(I)alamin adenosyltransferase compare
Atu4711 -0.4 -2.2 two component sensor kinase compare
Atu3750 -0.4 -0.9 thiamine-phosphate pyrophosphorylase compare
Atu2073 -0.4 -1.9 membrane protein compare
Atu1803 -0.4 -2.7 cold shock protein compare
Atu8117 -0.4 -1.6 hypothetical protein compare
Atu0926 -0.4 -1.7 hypothetical protein compare
Atu0361 -0.4 -1.3 transcriptional regulator compare
Atu5125 -0.4 -2.4 GntR family transcriptional regulator compare
Atu2237 -0.4 -1.3 cytochrome c1 compare


Specific Phenotypes

For 3 genes in this experiment

For stress Cinnamic acid in Agrobacterium fabrum C58

For stress Cinnamic acid across organisms