Experiment set11IT083 for Pseudomonas putida KT2440

Compare to:

pH 9

200 most important genes:

  gene name fitness t score description  
PP_3511 -5.7 -3.9 Branched-chain-amino-acid aminotransferase compare
PP_0787 -5.7 -3.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0422 -5.4 -3.7 Indole-3-glycerol phosphate synthase compare
PP_4680 -5.2 -6.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -5.2 -10.5 Ketol-acid reductoisomerase compare
PP_4890 -5.2 -6.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_3790 -5.1 -8.5 diaminopimelate epimerase compare
PP_2646 -5.0 -2.6 conserved protein of unknown function compare
PP_0293 -5.0 -2.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0965 -4.9 -7.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5097 -4.9 -8.8 homoserine O-acetyltransferase compare
PP_5098 -4.8 -5.7 methionine biosynthesis protein MetW compare
PP_0967 -4.8 -6.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1985 -4.8 -4.6 3-isopropylmalate dehydratase large subunit compare
PP_1111 -4.8 -8.0 putative Synthetase compare
PP_2001 -4.8 -8.6 O-succinylhomoserine sulfhydrylase compare
PP_5347 -4.8 -7.3 pyruvate carboxylase subunit A compare
PP_2168 -4.7 -4.6 Transaldolase compare
PP_1988 -4.7 -7.1 3-isopropylmalate dehydrogenase compare
PP_5104 -4.7 -5.5 thiazole synthase compare
PP_1109 -4.7 -11.3 Transcriptional regulator, GntR family compare
PP_0291 -4.6 -3.2 conserved protein of unknown function compare
PP_1110 -4.5 -4.3 serine acetyltransferase compare
PP_0290 -4.5 -8.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0966 -4.5 -5.3 Histidinol dehydrogenase compare
PP_5155 -4.4 -4.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5346 -4.4 -9.7 pyruvate carboxylase subunit B compare
PP_0246 -4.3 -1.9 two-component system DNA-binding response transcriptional dual regulator compare
PP_2345 -4.2 -3.3 conserved exported protein of unknown function compare
PP_5303 -4.2 -4.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1088 -4.2 -4.1 Argininosuccinate synthase compare
PP_1995 -4.1 -4.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2433 -4.1 -1.6 conserved protein of unknown function compare
PP_0417 -4.1 -17.3 Anthranilate synthase component 1 compare
PP_1231 -4.0 -2.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0420 -4.0 -10.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4679 -4.0 -2.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -4.0 -2.7 Acetylglutamate kinase compare
PP_2371 -3.9 -2.7 Sulphite reductase hemoprotein, beta subunit compare
PP_1348 -3.8 -6.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5090 -3.8 -1.6 putative cell division protein compare
PP_1017 -3.8 -6.7 mannose/glucose ABC transporter, permease protein compare
PP_2645 -3.7 -10.4 magnesium transporter, ATP-dependent compare
PP_5128 -3.7 -6.6 Dihydroxy-acid dehydratase compare
PP_1233 -3.7 -2.5 sulfurtransferase compare
PP_3376 -3.6 -6.8 putative phosphonate dehydrogenase compare
PP_5348 -3.5 -6.9 Transcriptional regulator, LysR family compare
PP_5185 -3.5 -3.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0362 -3.4 -10.0 Biotin synthase compare
PP_1986 -3.4 -2.6 3-isopropylmalate dehydratase small subunit compare
PP_0421 -3.4 -8.9 Anthranilate phosphoribosyltransferase compare
PP_1015 -3.3 -7.4 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_5017 -3.3 -0.8 Sec-independent protein translocase protein TatB compare
PP_4917 -3.3 -5.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3808 -3.2 -1.6 Antibiotic synthesis protein MbtH compare
PP_1079 -3.2 -3.7 Ornithine carbamoyltransferase compare
PP_4922 -3.1 -8.0 Phosphomethylpyrimidine synthase compare
PP_4561 -3.0 -0.8 stress response protein compare
PP_4782 -3.0 -2.1 Phosphomethylpyrimidine kinase compare
PP_4684 -3.0 -4.1 conserved protein of unknown function with kinase-like domain compare
PP_2497 -3.0 -1.5 conserved protein of unknown function compare
PP_3999 -3.0 -2.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2414 -2.9 -2.2 conserved exported protein of unknown function compare
PP_0082 -2.9 -2.8 tryptophan synthase alpha chain compare
PP_5015 -2.8 -1.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0022 -2.8 -1.0 hypothetical protein compare
PP_4909 -2.8 -3.3 phosphoserine phosphatase compare
PP_4937 -2.8 -4.9 toluene tolerance protein compare
PP_2714 -2.8 -4.1 Sensor histidine kinase compare
PP_0735 -2.7 -1.3 molybdopterin-synthase adenylyltransferase compare
PP_1054 -2.7 -2.3 Type II secretion pathway protein XcpZ compare
PP_0292 -2.7 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2327 -2.7 -5.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0289 -2.7 -4.6 Imidazoleglycerol-phosphate dehydratase compare
PP_5076 -2.6 -12.6 L-glutamate synthase(NADPH) alpha subunit compare
PP_3245 -2.6 -0.9 conserved protein of unknown function compare
PP_1011 -2.6 -8.5 glucokinase compare
PP_2107 -2.5 -1.5 conserved protein of unknown function compare
PP_4897 -2.5 -3.7 N-acetylmuramoyl-L-alanine amidase compare
PP_2217 -2.4 -3.1 enoyl-CoA hydratase compare
PP_2511 -2.4 -2.5 conserved protein of unknown function compare
PP_3799 -2.4 -3.7 conserved exported protein of unknown function compare
PP_5225 -2.4 -0.6 frataxin compare
PP_4268 -2.4 -0.8 nucleoid-associated broad specificity regulator compare
PP_1025 -2.3 -5.9 2-isopropylmalate synthase compare
PP_2388 -2.3 -2.2 Transporter, LysE family compare
PP_2390 -2.3 -4.2 Transcriptional regulator, LysR family compare
PP_0435 -2.3 -11.4 Peptidase, M23/M37 family compare
PP_5328 -2.2 -3.4 putative phosphate transport system permease protein compare
PP_4669 -2.2 -2.0 OmpA family protein compare
PP_2847 -2.2 -2.4 Urease accessory protein UreJ compare
PP_1898 -2.2 -1.3 MotA/TolQ/ExbB proton channel family protein compare
PP_5075 -2.2 -8.1 glutamate synthase (NADPH) beta subunit compare
PP_2328 -2.2 -4.1 Phosphoadenosine phosphosulfate reductase compare
PP_5495 -2.1 -2.5 protein of unknown function compare
PP_2903 -2.1 -1.5 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_3244 -2.0 -1.8 Magnesium transporter, MgtC family compare
PP_5571 -2.0 -1.7 conserved protein of unknown function compare
PP_2348 -1.9 -2.6 Sensor histidine kinase compare
PP_1013 -1.9 -4.3 Sensor histidine kinase compare
PP_1016 -1.9 -6.3 mannose/glucose ABC transporter, permease protein compare
PP_1012 -1.9 -3.3 DNA-binding response regulator compare
PP_3411 -1.9 -1.1 conserved protein of unknown function compare
PP_0184 -1.9 -1.3 Argininosuccinate lyase compare
PP_2370 -1.8 -1.5 conserved protein of unknown function compare
PP_3312 -1.8 -2.1 putative Heat shock protein compare
PP_2307 -1.8 -2.9 conserved protein of unknown function compare
PP_3318 -1.8 -1.4 conserved protein of unknown function compare
PP_1018 -1.8 -4.7 mannose/glucose ABC transporter - ATP binding subunit compare
PP_1679 -1.7 -2.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4994 -1.7 -3.6 conserved protein of unknown function compare
PP_3798 -1.7 -3.7 conserved protein of unknown function compare
PP_4109 -1.7 -2.3 conserved protein of unknown function compare
PP_0119 -1.7 -2.2 putative zinc uptake regulation protein ZUR compare
PP_1826 -1.7 -0.9 Hydrolase, isochorismatase family compare
PP_4723 -1.7 -2.3 Carbamoyl-phosphate synthase large chain compare
PP_5327 -1.6 -4.8 putative phosphate ABC transporter, permease subunit compare
PP_5320 -1.6 -3.7 two-component system DNA-binding transcriptional dual response regulator PhoB conserved
PP_5556 -1.6 -2.3 putative bacteriophage lysis protein compare
PP_4238 -1.6 -1.6 conserved protein of unknown function compare
PP_0127 -1.6 -2.6 Thiol:disulfide interchange protein compare
PP_0319 -1.6 -1.0 conserved protein of unknown function compare
PP_5176 -1.6 -1.6 conserved protein of unknown function compare
PP_3647 -1.6 -1.8 putative Oxidoreductase compare
PP_3801 -1.6 -5.4 putative Cation ABC transporter, periplasmic cation-binding protein compare
PP_3417 -1.6 -3.2 D-gluconate transporter compare
PP_0120 -1.5 -3.9 putative zinc ABC transporter compare
PP_4785 -1.5 -4.7 conserved exported protein of unknown function compare
PP_3190 -1.5 -2.3 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_0364 -1.5 -4.1 pimeloyl-[acp] methyl ester esterase compare
PP_3034 -1.5 -2.5 putative Regulator protein compare
PP_1739 -1.5 -1.7 conserved membrane protein of unknown function compare
PP_5014 -1.5 -0.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_3506 -1.5 -2.4 Magnesium chelatase, subunit ChII compare
PP_4069 -1.5 -2.1 conserved protein of unknown function compare
PP_1063 -1.4 -3.7 DNA-binding transcriptional regulator, homocysteine-binding compare
PP_0042 -1.4 -3.9 conserved exported protein of unknown function compare
PP_0040 -1.4 -1.9 hypothetical protein compare
PP_0048 -1.4 -0.7 conserved protein of unknown function compare
PP_3052 -1.4 -1.3 conserved protein of unknown function compare
PP_1528 -1.4 -1.0 conserved protein of unknown function compare
PP_1269 -1.4 -1.3 Universal stress protein family compare
PP_1099 -1.4 -1.4 Cold shock protein CapB compare
PP_4818 -1.4 -1.6 ribosomal protein L11 methyltransferase compare
PP_4213 -1.4 -1.6 putative dipeptidase compare
PP_5317 -1.4 -1.5 Probable chorismate pyruvate-lyase compare
PP_0879 -1.4 -2.8 dipeptide ABC transporter - putative ATP binding subunit compare
PP_4695 -1.4 -6.1 Sensory box histidine kinase compare
PP_4832 -1.4 -2.2 Precorrin-6x reductase compare
PP_5106 -1.4 -1.9 conserved inner membrane protein compare
PP_3580 -1.4 -1.8 conserved protein of unknown function compare
PP_2580 -1.3 -2.2 conserved protein of unknown function compare
PP_1676 -1.3 -3.0 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1430 -1.3 -4.5 putative periplasmic serine endoprotease DegP-like compare
PP_3460 -1.3 -1.4 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_3926 -1.3 -0.8 short-chain dehydrogenase compare
PP_3776 -1.3 -3.8 putative permease (RarD protein) compare
PP_1377 -1.3 -3.5 beta-ketoadipyl-CoA thiolase compare
PP_5008 -1.3 -1.4 Poly granule-associated protein compare
PP_2931 -1.3 -2.1 conserved protein of unknown function compare
PP_0978 -1.3 -2.5 conserved protein of unknown function compare
PP_1812 -1.3 -1.8 conserved protein of unknown function compare
PP_3098 -1.3 -0.9 conserved protein of unknown function compare
PP_4159 -1.3 -1.7 Potassium-transporting ATPase C chain compare
PP_1293 -1.3 -1.4 molybdopterin synthase small subunit compare
PP_0506 -1.2 -5.7 putative ABC efflux transporter, permease protein compare
PP_3802 -1.2 -1.6 putative Cation ABC transporter, ATP-binding protein compare
PP_3730 -1.2 -0.6 Transcriptional regulatory protein AruR compare
PP_1876 -1.2 -1.8 putative ATP/GTP-binding protein of the AAA+ family compare
PP_4364 -1.2 -3.6 putative Anti-sigma F factor antagonist compare
PP_4133 -1.2 -1.0 Transcriptional regulator-related protein compare
PP_1589 -1.2 -4.3 uridylyltransferase compare
PP_4054 -1.2 -1.5 conserved protein of unknown function compare
PP_1562 -1.2 -0.8 putative Phage terminase, small subunit compare
PP_1681 -1.2 -5.2 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_0507 -1.2 -3.5 putative ABC efflux transporter, ATP-binding protein compare
PP_0775 -1.2 -0.5 conserved protein of unknown function compare
PP_3788 -1.2 -4.1 putative Non-ribosomal peptide synthetase compare
PP_4944 -1.2 -3.5 Carbamoyltransferase compare
PP_1224 -1.1 -2.2 periplasmic subunit of the TolQRA transport system compare
PP_2681 -1.1 -0.7 coenzyme PQQ synthesis protein D compare
PP_2575 -1.1 -1.3 conserved exported protein of unknown function compare
PP_1190 -1.1 -1.9 conserved protein of unknown function compare
PP_5321 -1.1 -2.6 two-component system sensory histidine kinase compare
PP_2137 -1.1 -1.7 beta-ketoadipyl CoA thiolase, beta component compare
PP_0278 -1.1 -2.5 conserved protein of unknown function compare
PP_3875 -1.1 -3.0 conserved protein of unknown function compare
PP_2274 -1.1 -2.0 conserved protein of unknown function compare
PP_1304 -1.1 -3.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4529 -1.1 -1.5 conserved protein of unknown function compare
PP_5453 -1.1 -0.6 conserved protein of unknown function compare
PP_5331 -1.1 -2.5 Long-chain acyl-CoA thioester hydrolase compare
PP_2793 -1.1 -1.3 Acyl-CoA dehydrogenase family protein compare
PP_0846 -1.1 -0.4 DnaK-like molecular chaperone specific for IscU compare
PP_0365 -1.1 -3.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0881 -1.1 -2.9 dipeptide ABC transporter - putative membrane subunit compare
PP_3797 -1.1 -2.7 conserved membrane protein of unknown function compare
PP_1055 -1.1 -0.4 Type II secretion pathway protein GspN compare
PP_2132 -1.1 -1.6 Universal stress protein compare
PP_3804 -1.1 -2.8 conserved exported protein of unknown function compare


Specific Phenotypes

For 5 genes in this experiment

For pH D-Glucose in Pseudomonas putida KT2440

For pH D-Glucose across organisms