Experiment set11IT082 for Pseudomonas putida KT2440

Compare to:

pH 8

200 most important genes:

  gene name fitness t score description  
PP_1110 -5.7 -3.8 serine acetyltransferase compare
PP_0787 -4.9 -3.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0290 -4.9 -3.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4890 -4.8 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_4678 -4.7 -7.9 Ketol-acid reductoisomerase compare
PP_5098 -4.7 -3.2 methionine biosynthesis protein MetW compare
PP_1109 -4.6 -13.4 Transcriptional regulator, GntR family compare
PP_4922 -4.6 -7.7 Phosphomethylpyrimidine synthase compare
PP_3511 -4.6 -5.5 Branched-chain-amino-acid aminotransferase compare
PP_3790 -4.6 -7.0 diaminopimelate epimerase compare
PP_1988 -4.5 -4.4 3-isopropylmalate dehydrogenase compare
PP_0422 -4.4 -4.3 Indole-3-glycerol phosphate synthase compare
PP_0293 -4.3 -2.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5348 -4.3 -9.6 Transcriptional regulator, LysR family compare
PP_0967 -4.3 -4.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1985 -4.3 -4.1 3-isopropylmalate dehydratase large subunit compare
PP_4680 -4.1 -7.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5346 -4.1 -6.2 pyruvate carboxylase subunit B compare
PP_5347 -4.0 -7.7 pyruvate carboxylase subunit A compare
PP_0420 -4.0 -9.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1111 -4.0 -5.5 putative Synthetase compare
PP_5097 -4.0 -9.3 homoserine O-acetyltransferase compare
PP_2001 -3.9 -8.4 O-succinylhomoserine sulfhydrylase compare
PP_5104 -3.9 -5.4 thiazole synthase compare
PP_0417 -3.9 -9.8 Anthranilate synthase component 1 compare
PP_3376 -3.9 -6.9 putative phosphonate dehydrogenase compare
PP_1348 -3.8 -5.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2168 -3.8 -5.8 Transaldolase compare
PP_5155 -3.7 -3.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0362 -3.7 -11.2 Biotin synthase compare
PP_1088 -3.5 -5.3 Argininosuccinate synthase compare
PP_5303 -3.4 -4.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2433 -3.4 -1.5 conserved protein of unknown function compare
PP_0966 -3.3 -6.0 Histidinol dehydrogenase compare
PP_4679 -3.3 -2.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4701 -3.3 -1.0 glucose-6-phosphate isomerase compare
PP_2388 -3.3 -4.1 Transporter, LysE family compare
PP_0965 -3.2 -6.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5289 -3.1 -3.0 Acetylglutamate kinase compare
PP_0291 -3.1 -3.6 conserved protein of unknown function compare
PP_1995 -3.1 -4.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2370 -3.1 -2.9 conserved protein of unknown function compare
PP_2371 -3.1 -3.0 Sulphite reductase hemoprotein, beta subunit compare
PP_1011 -3.1 -8.3 glucokinase compare
PP_3052 -3.0 -1.8 conserved protein of unknown function compare
PP_0735 -3.0 -1.3 molybdopterin-synthase adenylyltransferase compare
PP_4937 -3.0 -3.5 toluene tolerance protein compare
PP_2645 -3.0 -8.3 magnesium transporter, ATP-dependent compare
PP_0421 -3.0 -7.4 Anthranilate phosphoribosyltransferase compare
PP_1018 -3.0 -5.6 mannose/glucose ABC transporter - ATP binding subunit compare
PP_1231 -3.0 -3.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5017 -2.9 -0.9 Sec-independent protein translocase protein TatB compare
PP_5128 -2.8 -7.2 Dihydroxy-acid dehydratase compare
PP_0289 -2.8 -6.0 Imidazoleglycerol-phosphate dehydratase compare
PP_5185 -2.8 -2.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1017 -2.8 -5.9 mannose/glucose ABC transporter, permease protein compare
PP_1986 -2.8 -2.4 3-isopropylmalate dehydratase small subunit compare
PP_1079 -2.7 -2.6 Ornithine carbamoyltransferase compare
PP_0834 -2.7 -1.4 Sec translocation complex subunit YajC compare
PP_4561 -2.6 -0.8 stress response protein compare
PP_t10 -2.6 -1.6 tRNA-Pro compare
PP_1015 -2.6 -7.8 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_2390 -2.6 -6.1 Transcriptional regulator, LysR family compare
PP_4684 -2.4 -2.9 conserved protein of unknown function with kinase-like domain compare
PP_5328 -2.4 -4.5 putative phosphate transport system permease protein compare
PP_3035 -2.4 -1.8 conserved protein of unknown function compare
PP_3244 -2.4 -2.7 Magnesium transporter, MgtC family compare
PP_2442 -2.3 -1.4 conserved protein of unknown function, DUF480 family compare
PP_4782 -2.3 -1.6 Phosphomethylpyrimidine kinase compare
PP_2327 -2.3 -2.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1012 -2.3 -4.1 DNA-binding response regulator compare
PP_3649 -2.3 -2.2 Transcriptional regulator, GntR family compare
PP_3892 -2.3 -0.9 conserved protein of unknown function compare
PP_1025 -2.2 -7.7 2-isopropylmalate synthase compare
PP_4909 -2.2 -2.2 phosphoserine phosphatase compare
PP_3245 -2.2 -0.9 conserved protein of unknown function compare
PP_0082 -2.2 -2.1 tryptophan synthase alpha chain compare
PP_1233 -2.2 -3.6 sulfurtransferase compare
PP_5076 -2.2 -12.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_1016 -2.1 -6.5 mannose/glucose ABC transporter, permease protein compare
PP_5015 -2.1 -1.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1293 -2.1 -1.9 molybdopterin synthase small subunit compare
PP_2714 -2.1 -3.4 Sensor histidine kinase compare
PP_2348 -2.1 -3.6 Sensor histidine kinase compare
PP_2646 -2.0 -2.2 conserved protein of unknown function compare
PP_0978 -1.9 -1.1 conserved protein of unknown function compare
PP_3766 -1.9 -3.4 Lactoylglutathione lyase compare
PP_4482 -1.9 -5.0 Transcriptional regulator, AraC family compare
PP_5202 -1.9 -2.0 putative cell division protein compare
PP_5090 -1.9 -1.2 putative cell division protein compare
PP_3234 -1.9 -2.8 Heat shock protein, HSP20 family compare
PP_0506 -1.9 -9.8 putative ABC efflux transporter, permease protein compare
PP_5075 -1.8 -6.1 glutamate synthase (NADPH) beta subunit compare
PP_3519 -1.8 -0.5 putative Lipoprotein compare
PP_3332 -1.8 -2.6 putative cytochrome c-type protein compare
PP_0366 -1.8 -3.0 dethiobiotin synthetase compare
PP_1099 -1.8 -2.3 Cold shock protein CapB compare
PP_5027 -1.8 -2.1 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0292 -1.7 -1.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5320 -1.7 -5.1 two-component system DNA-binding transcriptional dual response regulator PhoB conserved
PP_2137 -1.7 -2.3 beta-ketoadipyl CoA thiolase, beta component compare
PP_5659 -1.7 -3.1 protein of unknown function compare
PP_2328 -1.7 -1.2 Phosphoadenosine phosphosulfate reductase compare
PP_2031 -1.7 -1.3 conserved protein of unknown function compare
PP_0986 -1.7 -4.6 aminomethyltransferase compare
PP_0508 -1.7 -1.8 conserved exported protein of unknown function compare
PP_4797 -1.6 -1.6 conserved protein of unknown function compare
PP_5327 -1.6 -5.8 putative phosphate ABC transporter, permease subunit compare
PP_0261 -1.6 -3.1 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1523 -1.6 -3.2 conserved protein of unknown function compare
PP_3999 -1.6 -2.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1426 -1.6 -6.7 L-aspartate oxidase compare
PP_1009 -1.5 -4.5 glyceraldehyde-3-phosphate dehydrogenase compare
PP_5051 -1.5 -2.4 conserved protein of unknown function compare
PP_2631 -1.5 -0.8 putative cellulose biosynthesis, BcsF/YhjT compare
PP_2848 -1.5 -2.7 urease accessory protein compare
PP_0120 -1.5 -4.3 putative zinc ABC transporter compare
PP_1303 -1.5 -4.2 Sulfate adenylyltransferase subunit 2 compare
PP_5546 -1.5 -1.6 conserved protein of unknown function compare
PP_5000 -1.4 -0.9 peptidase component of the ATP-dependent HslVU protease compare
PP_1020 -1.4 -1.6 putative glucose-6-phosphate 1-epimerase compare
PP_1063 -1.4 -5.4 DNA-binding transcriptional regulator, homocysteine-binding compare
PP_1328 -1.4 -1.3 Protein MraZ compare
PP_5453 -1.4 -1.4 conserved protein of unknown function compare
PP_5448 -1.4 -2.4 conserved protein of unknown function compare
PP_1812 -1.4 -2.5 conserved protein of unknown function compare
PP_2060 -1.4 -1.5 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_1224 -1.4 -3.5 periplasmic subunit of the TolQRA transport system compare
PP_4997 -1.4 -1.8 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_3508 -1.3 -1.8 Protein CobW compare
PP_4917 -1.3 -2.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1322 -1.3 -0.5 putative Lipoprotein compare
PP_0260 -1.3 -3.0 ADP-sugar pyrophosphorylase compare
PP_4695 -1.3 -6.9 Sensory box histidine kinase compare
PP_1644 -1.3 -2.1 NAD(P)H dehydrogenase (quinone) compare
PP_4213 -1.3 -1.8 putative dipeptidase compare
PP_1310 -1.3 -1.6 conserved hypothetical protein compare
PP_1430 -1.3 -4.4 putative periplasmic serine endoprotease DegP-like compare
PP_0202 -1.3 -3.6 CBS domain-containing protein compare
PP_4785 -1.3 -4.3 conserved exported protein of unknown function compare
PP_0910 -1.3 -2.9 conserved exported protein of unknown function compare
PP_5488 -1.3 -3.8 conserved protein of unknown function compare
PP_1045 -1.3 -1.2 Type II secretion pathway protein XcpP compare
PP_3840 -1.3 -1.0 conserved protein of unknown function compare
PP_2580 -1.2 -2.6 conserved protein of unknown function compare
PP_3064 -1.2 -1.9 Phage tail protein compare
PP_3874 -1.2 -1.4 conserved protein of unknown function compare
PP_2581 -1.2 -1.4 conserved protein of unknown function compare
PP_1493 -1.2 -2.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0607 -1.2 -1.9 putative Type IV pili biogenesis protein FimT compare
PP_3425 -1.2 -3.8 Efflux transporter RND family, MFP subunit compare
PP_5162 -1.2 -2.9 conserved exported protein of unknown function compare
PP_0980 -1.2 -3.6 Probable cytosol aminopeptidase compare
PP_2976 -1.2 -0.5 putative transposase compare
PP_3946 -1.2 -0.5 HTH-type transcriptional repressor NicR compare
PP_4060 -1.2 -7.2 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_0435 -1.2 -7.3 Peptidase, M23/M37 family compare
PP_5321 -1.2 -3.5 two-component system sensory histidine kinase compare
PP_5035 -1.2 -3.3 Histidine utilization repressor compare
PP_3798 -1.2 -2.7 conserved protein of unknown function compare
PP_4009 -1.2 -2.5 ATP-dependent Clp protease adapter protein ClpS compare
PP_0502 -1.2 -3.0 conserved protein of unknown function compare
PP_3505 -1.2 -0.8 conserved protein of unknown function compare
PP_1185 -1.2 -2.6 Outer membrane protein H1 compare
PP_5329 -1.2 -3.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0184 -1.2 -0.8 Argininosuccinate lyase compare
PP_3034 -1.2 -2.0 putative Regulator protein compare
PP_3647 -1.1 -2.1 putative Oxidoreductase compare
PP_4045 -1.1 -2.2 conserved protein of unknown function compare
PP_0022 -1.1 -0.7 hypothetical protein compare
PP_4159 -1.1 -2.1 Potassium-transporting ATPase C chain compare
PP_5080 -1.1 -2.4 type 4 pili biogenesis protein compare
PP_4897 -1.1 -2.0 N-acetylmuramoyl-L-alanine amidase compare
PP_3258 -1.1 -1.3 conserved protein of unknown function compare
PP_4666 -1.1 -2.3 3-hydroxyisobutyrate dehydrogenase compare
PP_2849 -1.1 -4.4 urease accessory protein compare
PP_2840 -1.1 -2.4 putative Membrane protein compare
PP_5569 -1.0 -1.6 protein of unknown function of phage origin compare
PP_2650 -1.0 -1.9 putative 4-hydroxybutyrate dehydrogenase compare
PP_0957 -1.0 -0.9 D-arabinose 5-phosphate isomerase compare
PP_0694 -1.0 -2.4 conserved protein of unknown function compare
PP_5658 -1.0 -1.2 protein of unknown function compare
PP_2978 -1.0 -2.4 conserved protein of unknown function compare
PP_0841 -1.0 -2.1 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_0610 -1.0 -1.9 conserved exported protein of unknown function compare
PP_5447 -1.0 -3.4 conserved membrane protein of unknown function compare
PP_5508 -1.0 -0.9 conserved protein of unknown function compare
PP_2379 -1.0 -2.5 putative cytochrome oxidase biogenesis protein compare
PP_2070 -1.0 -1.4 Transcriptional regulator, AraC family compare
PP_0852 -1.0 -1.5 Transcriptional regulator, Cro/CI family compare
PP_1692 -1.0 -2.1 conserved protein of unknown function compare
PP_0406 -1.0 -4.4 Nucleotidyltransferase family protein compare
PP_0095 -1.0 -3.8 putative enzyme of unknown function compare
PP_3307 -1.0 -1.0 conserved protein of unknown function compare
PP_3239 -1.0 -1.3 putative cointegrate resolution protein T Tn4652 compare
PP_3065 -1.0 -4.5 Pyocin R2_PP, tail formation compare
PP_4720 -1.0 -1.3 putative RNA binding protein compare
PP_5427 -1.0 -2.4 conserved exported protein of unknown function compare
PP_1301 -1.0 -3.7 quality control serine endoprotease DegS compare
PP_3551 -1.0 -0.6 DNA-binding response regulator, LuxR family compare


Specific Phenotypes

For 7 genes in this experiment

For pH D-Glucose in Pseudomonas putida KT2440

For pH D-Glucose across organisms