Experiment set11IT080 for Agrobacterium fabrum C58

Compare to:

LB with Mandelic acid 5 mM

200 most important genes:

  gene name fitness t score description  
Atu0999 -2.7 -9.3 magnesium transport protein compare
Atu0141 -1.5 -2.4 cytochrome O ubiquinol oxidase subunit I compare
Atu3730 -1.4 -2.3 hypothetical protein compare
Atu0434 -1.4 -3.0 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0422 -1.3 -3.0 ABC transporter, membrane spanning protein compare
Atu0030 -1.3 -2.3 phosphocarrier protein HPr compare
Atu0843 -1.3 -11.1 P type cation (metal) transporter, ATPase component compare
Atu0912 -1.3 -1.7 Na+/H+ antiporter compare
Atu1149 -1.2 -1.9 adenylate cyclase compare
Atu3663 -1.2 -0.9 hypothetical protein compare
Atu4217 -1.1 -2.2 TetR family transcriptional regulator compare
Atu2633 -1.1 -2.9 RhtB family transporter compare
Atu1470 -1.1 -1.7 Camphor resistance protein compare
Atu3469 -1.1 -2.8 phosphoglyceromutase compare
Atu1225 -1.1 -1.5 hypothetical protein compare
Atu0659 -1.0 -4.2 NTP pyrophosphohydrolase, MutT family compare
Atu2125 -1.0 -1.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu1810 -1.0 -1.4 hypothetical protein compare
Atu3120 -1.0 -0.7 hypothetical protein compare
Atu0533 -1.0 -1.4 putative inhibitor of septum formation compare
Atu2662 -0.9 -1.1 acetyltransferase compare
Atu1446 -0.9 -1.5 two component response regulator compare
Atu2796 -0.9 -4.6 precorrin-4 C11-methyltransferase compare
Atu2352 -0.9 -2.1 hypothetical protein compare
Atu3467 -0.9 -2.8 hypothetical protein compare
Atu0784 -0.9 -3.3 hypothetical protein compare
Atu3429 -0.9 -1.5 hypothetical protein compare
Atu3005 -0.9 -0.8 hypothetical protein compare
Atu1679 -0.8 -1.7 peptidyl prolyl cis-trans isomerase compare
Atu1344 -0.8 -2.0 hypothetical protein compare
Atu2832 -0.8 -3.2 tRNA modification GTPase compare
Atu0331 -0.8 -2.7 sigma-54 modulation protein compare
Atu0566 -0.8 -2.0 hypothetical protein compare
Atu0888 -0.8 -4.7 transcriptional regulator, MerR family compare
Atu2245 -0.8 -5.7 Na+/Pi-cotransporter compare
Atu2585 -0.8 -3.7 hypothetical protein compare
Atu2805 -0.8 -4.4 cobalamin synthesis protein compare
Atu0185 -0.8 -3.0 methylglyoxal synthase compare
Atu1110 -0.8 -2.3 cytosol aminopeptidase compare
Atu2800 -0.8 -2.6 precorrin-3B C17-methyltransferase compare
Atu0031 -0.8 -1.3 PTS system, IIA component compare
Atu0606 -0.8 -2.4 hypothetical protein compare
Atu3009 -0.8 -1.1 exopolysaccharide production protein compare
Atu3739 -0.8 -1.8 phosphoglycerate kinase compare
Atu4884 -0.7 -2.9 hypothetical protein compare
Atu4890 -0.7 -1.5 IS426 transposase compare
Atu0050 -0.7 -3.8 two component response regulator compare
Atu1219 -0.7 -0.9 hypothetical protein compare
Atu1874 -0.7 -2.4 RecA protein compare
Atu2824 -0.7 -3.1 hypothetical protein compare
Atu8162 -0.7 -1.3 hypothetical protein compare
Atu0947 -0.7 -2.1 transcriptional regulator, AsnC family compare
Atu2433 -0.7 -1.1 hypothetical protein compare
Atu0051 -0.7 -3.7 two component sensor kinase compare
Atu0658 -0.7 -4.2 phosphate permease compare
Atu1030 -0.7 -1.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2710 -0.7 -3.6 hypothetical protein compare
Atu2439 -0.7 -1.5 hypothetical protein compare
Atu3015 -0.7 -3.5 hypothetical protein compare
Atu3910 -0.7 -2.4 LamB/YcsF family protein compare
Atu1850 -0.7 -2.9 phosphoribosylformylglycinamidine synthetase II compare
Atu2207 -0.7 -3.1 two component sensor kinase compare
Atu1759 -0.7 -4.8 L-serine dehydratase compare
Atu1891 -0.7 -2.0 cobalamin biosynthesis protein compare
Atu2804 -0.7 -4.7 cobaltochelatase subunit compare
Atu0399 -0.6 -3.3 dihydroorotase compare
Atu4317 -0.6 -2.2 TetR family transcriptional regulator compare
Atu3019 -0.6 -4.4 hypothetical protein compare
Atu3486 -0.6 -2.0 DeoR family transcriptional regulator compare
Atu4635 -0.6 -3.1 hypothetical protein compare
Atu0689 -0.6 -4.1 ribosomal large subunit pseudouridine synthase B compare
Atu0602 -0.6 -4.4 glutamine synthetase compare
Atu2807 -0.6 -3.5 cob(I)alamin adenosyltransferase compare
Atu2193 -0.6 -0.8 hypothetical protein compare
Atu4072 -0.6 -1.3 nodulation protein N compare
Atu0601 -0.6 -4.5 oxidoreductase compare
Atu2787 -0.6 -0.9 hypothetical protein compare
Atu0039 -0.6 -1.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu4882 -0.6 -1.7 hypothetical protein compare
Atu0029 -0.6 -2.5 S-adenosylhomocysteine hydrolase compare
Atu1308 -0.6 -2.7 aspartate carbamoyl transferase catalytic subunit compare
Atu8202 -0.6 -2.3 hypothetical protein compare
Atu2803 -0.6 -2.6 Cobalamin biosynthesis associated protein compare
Atu0184 -0.6 -2.0 glucokinase compare
Atu1777 -0.6 -2.5 hypothetical protein compare
Atu2809 -0.6 -3.4 cobalamin biosynthesis protein compare
Atu5501 -0.6 -1.6 hypothetical protein compare
Atu1359 -0.6 -0.8 dnaK deletion suppressor protein compare
Atu0421 -0.6 -1.0 ABC transporter, membrane spanning protein compare
Atu8138 -0.6 -1.2 hypothetical protein compare
Atu4410 -0.6 -2.7 periplasmic nitrate reductase, cytochrome c-type protein compare
Atu5057 -0.6 -1.9 hypothetical protein compare
Atu2063 -0.6 -1.0 hypothetical protein compare
Atu4893 -0.6 -2.4 hypothetical protein compare
Atu0769 -0.6 -1.0 protoheme IX farnesyltransferase compare
Atu3014 -0.6 -1.0 hypothetical protein compare
Atu8117 -0.6 -1.1 hypothetical protein compare
Atu3023 -0.6 -3.6 sugar ABC transporter permease compare
Atu3755 -0.6 -2.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1503 -0.6 -0.9 hypothetical protein compare
Atu2793 -0.6 -2.3 cobyrinic acid a,c-diamide synthase compare
Atu1846 -0.5 -1.2 hypothetical protein compare
Atu0977 -0.5 -2.2 serine protease DO-like protease compare
Atu0486 -0.5 -2.8 dihydroorotate dehydrogenase compare
Atu4472 -0.5 -1.4 hypothetical protein compare
Atu2795 -0.5 -2.3 cobalamin biosynthetic protein compare
Atu3010 -0.5 -3.3 hypothetical protein compare
Atu4773 -0.5 -0.7 two component response regulator compare
Atu0142 -0.5 -1.4 cytochrome o ubiquinol oxidase subunit II compare
Atu0572 -0.5 -1.6 hypothetical protein compare
Atu0375 -0.5 -1.1 small heat shock protein compare
Atu1542 -0.5 -2.9 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2684 -0.5 -1.3 hypothetical protein compare
Atu3012 -0.5 -0.9 hypothetical protein compare
Atu2831 -0.5 -2.9 glucose inhibited division protein A compare
Atu2808 -0.5 -3.1 cobyric acid synthase compare
Atu0400 -0.5 -2.3 orotate phosphoribosyltransferase compare
Atu4077 -0.5 -3.6 glycogen branching protein compare
Atu2554 -0.5 -1.2 lysyl-tRNA synthetase compare
Atu8036 -0.5 -1.2 protein YBGT-like protein compare
Atu4449 -0.5 -2.2 sorbitol/mannitol ABC transporter permease compare
Atu4527 -0.5 -1.1 hypothetical protein compare
Atu0941 -0.5 -0.7 hypothetical protein compare
Atu3688 -0.5 -1.5 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu0580 -0.5 -2.3 flagellar biosynthetic protein compare
Atu0230 -0.5 -1.2 hypothetical protein compare
Atu0368 -0.5 -2.2 tRNA pseudouridine synthase I compare
Atu4099 -0.5 -2.1 hypothetical protein compare
Atu4889 -0.5 -2.5 hypothetical protein compare
Atu0943 -0.5 -1.3 hypothetical protein compare
Atu3336 -0.5 -1.4 hypothetical protein compare
Atu4133 -0.5 -1.2 hypothetical protein compare
Atu2682 -0.5 -2.2 hypothetical protein compare
Atu2080 -0.5 -2.0 acetyltransferase compare
Atu0836 -0.5 -1.3 Glutathione-S-transferase compare
Atu1140 -0.5 -2.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3461 -0.5 -0.8 GntR family transcriptional regulator compare
Atu3963 -0.5 -2.7 GntR family transcriptional regulator compare
Atu2692 -0.5 -1.7 intracellular septation protein compare
Atu2798 -0.5 -1.8 precorrin-6y methyltransferase compare
Atu2034 -0.5 -2.3 transcriptional regulator, ArsR family compare
Atu8088 -0.5 -1.2 hypothetical protein compare
Atu2799 -0.5 -1.6 precorrin-6x reductase compare
Atu8190 -0.5 -1.6 hypothetical protein compare
Atu1677 -0.4 -1.7 queuine tRNA-ribosyltransferase compare
Atu0119 -0.4 -0.8 hypothetical protein compare
Atu3466 -0.4 -1.5 ArsR family transcriptional regulator compare
Atu0188 -0.4 -1.5 ABC transporter, membrane spanning protein (peptide) compare
Atu2239 -0.4 -1.6 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1853 -0.4 -2.1 hypothetical protein compare
Atu1354 -0.4 -0.7 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu3218 -0.4 -1.4 hypothetical protein compare
Atu1346 -0.4 -1.5 phenazine antibiotic biosynthesis related protein compare
Atu0972 -0.4 -2.3 lipA protein compare
Atu4879 -0.4 -2.5 hypothetical protein compare
Atu3016 -0.4 -2.4 phosphoglyceromutase compare
Atu0189 -0.4 -1.5 ABC transporter, membrane spanning protein (peptide) compare
Atu4875 -0.4 -2.3 hypothetical protein compare
Atu0598 -0.4 -2.7 phosphogluconate dehydratase compare
Atu1125 -0.4 -1.8 ABC transporter, membrane spanning protein compare
Atu2123 -0.4 -2.2 methylenetetrahydrofolate reductase compare
Atu3030 -0.4 -2.0 hypothetical protein compare
Atu5125 -0.4 -1.8 GntR family transcriptional regulator compare
Atu0630 -0.4 -1.2 hypothetical protein compare
Atu1904 -0.4 -1.3 transcriptional regulator compare
Atu0094 -0.4 -2.4 hypothetical protein compare
Atu2810 -0.4 -2.8 cobalamin biosynthetic protein compare
Atu2772 -0.4 -2.2 Invasion protein A compare
Atu2052 -0.4 -2.2 hypothetical protein compare
Atu3021 -0.4 -3.0 sugar ABC transporter ATPase compare
Atu4148 -0.4 -2.2 UDP-glucuronic acid epimerase compare
Atu1070 -0.4 -2.3 hypothetical protein compare
Atu1795 -0.4 -1.8 malonate transporter compare
Atu2124 -0.4 -2.0 transcriptional regulator, ArsR family compare
Atu4877 -0.4 -2.7 short-chain dehydrogenase compare
Atu4173 -0.4 -1.1 phosphoenolpyruvate-protein phosphotransferase compare
Atu2045 -0.4 -2.7 HFLK protein compare
Atu3481 -0.4 -2.2 enoyl-CoA hydratase compare
Atu2650 -0.4 -2.4 glycerol-3-phosphate dehydrogenase compare
Atu3106 -0.4 -2.4 sugar ABC transporter substrate-binding protein compare
Atu2174 -0.4 -2.6 hypothetical protein compare
Atu3704 -0.4 -2.8 hypothetical protein compare
Atu0025 -0.4 -1.0 hypothetical protein compare
Atu2794 -0.4 -2.3 uroporphyrin-III C-methyltransferase compare
Atu1463 -0.4 -2.5 glycine cleavage system component H compare
Atu4888 -0.4 -1.5 hypothetical protein compare
Atu3400 -0.4 -1.2 hypothetical protein compare
Atu0435 -0.4 -1.0 tRNA-Gly compare
Atu2201 -0.4 -0.9 hydrolase compare
Atu1513 -0.4 -2.1 ABC excinuclease subunit A compare
Atu1184 -0.4 -1.5 hypothetical protein compare
Atu0448 -0.4 -1.9 hypothetical protein compare
Atu0862 -0.4 -2.3 hypothetical protein compare
Atu1074 -0.4 -2.4 NAD/NADP dependent oxidoreductase compare
Atu3169 -0.4 -1.6 sorbitol/mannitol ABC transporter permease compare
Atu2073 -0.4 -1.8 membrane protein compare
Atu2797 -0.4 -1.4 cobalamin biosynthesis protein compare
Atu1103 -0.4 -1.6 rRNA-adenine N6,N6-dimethyltransferase compare
Atu1678 -0.4 -1.8 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu0923 -0.4 -2.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Mandelic acid across organisms