Experiment set11IT079 for Pseudomonas putida KT2440

Compare to:

pH 5

200 most important genes:

  gene name fitness t score description  
PP_4890 -6.2 -4.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_2388 -6.2 -4.0 Transporter, LysE family compare
PP_3511 -6.0 -4.2 Branched-chain-amino-acid aminotransferase compare
PP_5348 -5.7 -8.7 Transcriptional regulator, LysR family compare
PP_3790 -5.7 -8.7 diaminopimelate epimerase compare
PP_1988 -5.5 -5.3 3-isopropylmalate dehydrogenase compare
PP_2390 -5.5 -9.1 Transcriptional regulator, LysR family compare
PP_0290 -5.4 -5.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4678 -5.4 -10.4 Ketol-acid reductoisomerase compare
PP_0967 -5.3 -3.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4680 -5.3 -8.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0420 -5.1 -8.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5347 -5.1 -5.0 pyruvate carboxylase subunit A compare
PP_1110 -5.1 -4.8 serine acetyltransferase compare
PP_1985 -5.1 -4.9 3-isopropylmalate dehydratase large subunit compare
PP_0787 -5.1 -4.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0293 -5.1 -2.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4922 -5.0 -12.8 Phosphomethylpyrimidine synthase compare
PP_2001 -5.0 -10.0 O-succinylhomoserine sulfhydrylase compare
PP_5097 -4.9 -10.5 homoserine O-acetyltransferase compare
PP_5346 -4.9 -7.5 pyruvate carboxylase subunit B compare
PP_5155 -4.9 -3.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1348 -4.9 -4.7 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5104 -4.9 -5.8 thiazole synthase compare
PP_1109 -4.8 -13.7 Transcriptional regulator, GntR family compare
PP_2168 -4.8 -6.6 Transaldolase compare
PP_0901 -4.7 -7.7 DNA-binding response regulator compare
PP_5098 -4.6 -9.3 methionine biosynthesis protein MetW compare
PP_1012 -4.6 -3.2 DNA-binding response regulator compare
PP_0965 -4.6 -10.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0966 -4.6 -5.4 Histidinol dehydrogenase compare
PP_1995 -4.6 -3.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5303 -4.5 -5.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_3244 -4.4 -2.7 Magnesium transporter, MgtC family compare
PP_1111 -4.3 -8.7 putative Synthetase compare
PP_0422 -4.2 -5.7 Indole-3-glycerol phosphate synthase compare
PP_1231 -4.2 -2.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0417 -4.2 -17.7 Anthranilate synthase component 1 compare
PP_1088 -4.2 -5.7 Argininosuccinate synthase compare
PP_5289 -4.2 -2.9 Acetylglutamate kinase compare
PP_2371 -4.2 -2.9 Sulphite reductase hemoprotein, beta subunit compare
PP_0902 -4.2 -9.8 integral membrane sensor signal transduction histidine kinase compare
PP_5076 -4.1 -19.9 L-glutamate synthase(NADPH) alpha subunit compare
PP_4917 -4.0 -2.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5090 -4.0 -1.8 putative cell division protein compare
PP_1986 -3.9 -2.2 3-isopropylmalate dehydratase small subunit compare
PP_4679 -3.8 -5.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0362 -3.8 -12.1 Biotin synthase compare
PP_5185 -3.8 -2.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5075 -3.8 -9.1 glutamate synthase (NADPH) beta subunit compare
PP_0421 -3.7 -9.4 Anthranilate phosphoribosyltransferase compare
PP_3376 -3.7 -6.3 putative phosphonate dehydrogenase compare
PP_1011 -3.7 -9.5 glucokinase compare
PP_1017 -3.7 -7.0 mannose/glucose ABC transporter, permease protein compare
PP_1233 -3.6 -3.5 sulfurtransferase compare
PP_5128 -3.6 -8.5 Dihydroxy-acid dehydratase compare
PP_0834 -3.6 -1.6 Sec translocation complex subunit YajC compare
PP_0292 -3.5 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1079 -3.5 -3.4 Ornithine carbamoyltransferase compare
PP_0735 -3.5 -1.3 molybdopterin-synthase adenylyltransferase compare
PP_0289 -3.5 -7.3 Imidazoleglycerol-phosphate dehydratase compare
PP_1018 -3.5 -5.3 mannose/glucose ABC transporter - ATP binding subunit compare
PP_5017 -3.4 -0.9 Sec-independent protein translocase protein TatB compare
PP_2327 -3.4 -4.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1025 -3.3 -10.0 2-isopropylmalate synthase compare
PP_1015 -3.3 -7.7 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_2646 -3.2 -2.8 conserved protein of unknown function compare
PP_3999 -3.2 -3.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4909 -3.2 -3.1 phosphoserine phosphatase compare
PP_2370 -3.2 -2.9 conserved protein of unknown function compare
PP_2645 -3.1 -9.2 magnesium transporter, ATP-dependent compare
PP_0082 -3.0 -2.9 tryptophan synthase alpha chain compare
PP_5015 -3.0 -2.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0022 -2.9 -1.1 hypothetical protein compare
PP_2433 -2.8 -3.7 conserved protein of unknown function compare
PP_1016 -2.8 -8.3 mannose/glucose ABC transporter, permease protein compare
PP_4593 -2.7 -1.0 conserved protein of unknown function compare
PP_3241 -2.7 -0.7 conserved exported protein of unknown function compare
PP_3649 -2.6 -4.5 Transcriptional regulator, GntR family compare
PP_1764 -2.6 -6.0 Phosphoglycolate phosphatase 2 compare
PP_4782 -2.6 -2.8 Phosphomethylpyrimidine kinase compare
PP_2348 -2.5 -3.8 Sensor histidine kinase compare
PP_0435 -2.5 -14.2 Peptidase, M23/M37 family compare
PP_4268 -2.5 -0.9 nucleoid-associated broad specificity regulator compare
PP_2328 -2.4 -3.6 Phosphoadenosine phosphosulfate reductase compare
PP_1493 -2.4 -3.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0127 -2.4 -4.5 Thiol:disulfide interchange protein compare
PP_0291 -2.4 -3.6 conserved protein of unknown function compare
PP_0506 -2.3 -10.4 putative ABC efflux transporter, permease protein compare
PP_5652 -2.2 -1.6 conserved protein of unknown function, phage origin compare
PP_0852 -2.2 -3.5 Transcriptional regulator, Cro/CI family compare
PP_4364 -2.1 -4.7 putative Anti-sigma F factor antagonist compare
PP_1716 -2.1 -2.5 Transcriptional regulator, Cro/CI family compare
PP_2145 -2.1 -6.6 beta-N-acetylglucosaminidase compare
PP_1013 -2.1 -4.4 Sensor histidine kinase compare
PP_5328 -2.1 -4.2 putative phosphate transport system permease protein compare
PP_3245 -2.1 -0.9 conserved protein of unknown function compare
PP_4776 -2.1 -7.1 AsnC family transcriptional regulator compare
PP_4684 -2.0 -6.2 conserved protein of unknown function with kinase-like domain compare
PP_1185 -2.0 -4.4 Outer membrane protein H1 compare
PP_0949 -2.0 -5.5 putative ATP-binding protein UPF0042 compare
PP_4835 -1.9 -2.0 conserved exported protein of unknown function compare
PP_0434 -1.9 -8.8 Anhydro-N-acetylmuramic acid kinase compare
PP_4723 -1.9 -2.3 Carbamoyl-phosphate synthase large chain compare
PP_5327 -1.9 -5.8 putative phosphate ABC transporter, permease subunit compare
PP_4482 -1.8 -3.2 Transcriptional regulator, AraC family compare
PP_3417 -1.8 -4.4 D-gluconate transporter compare
PP_4669 -1.8 -2.0 OmpA family protein compare
PP_0957 -1.8 -1.9 D-arabinose 5-phosphate isomerase compare
PP_3539 -1.7 -2.4 putative Transcriptional regulator compare
PP_4045 -1.7 -2.7 conserved protein of unknown function compare
PP_0406 -1.7 -4.8 Nucleotidyltransferase family protein compare
PP_1237 -1.7 -1.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5110 -1.7 -1.7 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_0035 -1.7 -3.5 putative bactoprenol-linked glycose transferase compare
PP_4226 -1.7 -2.4 conserved protein of unknown function compare
PP_4695 -1.7 -7.4 Sensory box histidine kinase compare
PP_0643 -1.6 -1.5 protein of unknown function compare
PP_5487 -1.6 -3.5 conserved protein of unknown function compare
PP_0405 -1.6 -10.6 conserved protein of unknown function compare
PP_0893 -1.6 -2.2 ThiJ/PfpI family protein compare
PP_0694 -1.6 -3.8 conserved protein of unknown function compare
PP_5533 -1.6 -1.2 conserved protein of unknown function compare
PP_5320 -1.6 -4.9 two-component system DNA-binding transcriptional dual response regulator PhoB conserved
PP_5014 -1.6 -1.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_2883 -1.6 -1.2 conserved protein of unknown function compare
PP_1355 -1.6 -10.9 Muropeptide permease AmpG compare
PP_1328 -1.5 -1.5 Protein MraZ compare
PP_0627 -1.5 -1.9 conserved protein of unknown function compare
PP_0246 -1.5 -1.5 two-component system DNA-binding response transcriptional dual regulator compare
PP_4937 -1.5 -3.4 toluene tolerance protein compare
PP_0184 -1.5 -1.5 Argininosuccinate lyase compare
PP_1045 -1.5 -1.3 Type II secretion pathway protein XcpP compare
PP_0507 -1.5 -4.3 putative ABC efflux transporter, ATP-binding protein compare
PP_4066 -1.5 -2.6 methylglutaconyl-CoA hydratase compare
PP_4994 -1.5 -2.7 conserved protein of unknown function compare
PP_0612 -1.5 -5.6 FAD-dependent glycine/D-amino acid oxidase compare
PP_1898 -1.5 -1.4 MotA/TolQ/ExbB proton channel family protein compare
PP_1303 -1.5 -4.4 Sulfate adenylyltransferase subunit 2 compare
PP_1912 -1.5 -2.0 Phosphate acyltransferase compare
PP_2809 -1.5 -3.0 conserved membrane protein of unknown function compare
PP_0809 -1.5 -5.7 disulfide bond formation protein B compare
PP_2714 -1.5 -3.1 Sensor histidine kinase compare
PP_4627 -1.4 -3.1 transcriptional regulator, LysR family compare
PP_5329 -1.4 -3.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5216 -1.4 -1.2 exopolyphosphatase compare
PP_4214 -1.4 -3.2 pyoverdine biosynthesis related protein compare
PP_4690 -1.4 -1.6 Rieske 2Fe-2S family protein compare
PP_4196 -1.4 -1.6 conserved exported protein of unknown function compare
PP_4785 -1.3 -3.8 conserved exported protein of unknown function compare
PP_2931 -1.3 -2.3 conserved protein of unknown function compare
PP_2442 -1.3 -1.3 conserved protein of unknown function, DUF480 family compare
PP_3341 -1.3 -2.8 nickel-responsive regulator compare
PP_4060 -1.3 -6.6 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_3328 -1.3 -1.8 putative Ring-cleaving dioxygenase compare
PP_2747 -1.3 -1.4 conserved protein of unknown function compare
PP_2132 -1.3 -2.4 Universal stress protein compare
PP_4701 -1.3 -0.7 glucose-6-phosphate isomerase compare
PP_2820 -1.3 -1.4 HTH-type transcriptional regulator nfxB compare
PP_5604 -1.3 -1.8 putative subtilisin-like serine protease compare
PP_1426 -1.3 -5.8 L-aspartate oxidase compare
PP_4267 -1.3 -3.3 Recombination protein RecR compare
PP_4897 -1.2 -1.2 N-acetylmuramoyl-L-alanine amidase compare
PP_5507 -1.2 -1.8 protein of unknown function compare
PP_1009 -1.2 -2.2 glyceraldehyde-3-phosphate dehydrogenase compare
PP_2847 -1.2 -2.0 Urease accessory protein UreJ compare
PP_4700 -1.2 -0.8 pantothenate synthetase compare
PP_4792 -1.2 -1.4 conserved exported protein of unknown function compare
PP_3034 -1.2 -2.6 putative Regulator protein compare
PP_0951 -1.2 -3.8 Ribosome hibernation promoting factor compare
PP_4073 -1.2 -1.7 conserved exported protein of unknown function compare
PP_1779 -1.2 -2.8 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0946 -1.2 -3.3 superoxide dismutase (Mn) compare
PP_5557 -1.2 -0.9 protein of unknown function compare
PP_3924 -1.2 -1.6 conserved protein of unknown function compare
PP_4173 -1.2 -4.2 Sensor histidine kinase/response regulator compare
PP_4626 -1.2 -3.0 holin regulator of murein hydrolases compare
PP_3766 -1.2 -1.8 Lactoylglutathione lyase compare
PP_1176 -1.2 -0.8 conserved protein of unknown function compare
PP_5491 -1.2 -1.5 conserved protein of unknown function with SEC-C motif domain compare
PP_0673 -1.1 -1.0 conserved protein of unknown function compare
PP_5628 -1.1 -2.3 conserved protein of unknown function compare
PP_3786 -1.1 -5.8 aminotransferase compare
PP_5206 -1.1 -4.2 putative translation-related protein compare
PP_1055 -1.1 -0.4 Type II secretion pathway protein GspN compare
PP_2880 -1.1 -0.9 Transcriptional regulator, TetR family compare
PP_4172 -1.1 -4.7 conserved exported protein of unknown function compare
PP_3808 -1.1 -1.2 Antibiotic synthesis protein MbtH compare
PP_0878 -1.1 -2.8 dipeptide ABC transporter, binding subunit compare
PP_0508 -1.1 -1.3 conserved exported protein of unknown function compare
PP_5054 -1.1 -0.6 glutaredoxin 3 compare
PP_2624 -1.1 -1.7 conserved protein of unknown function compare
PP_5687 -1.1 -2.3 putative permease of the major facilitator superfamily compare
PP_1941 -1.1 -3.7 conserved protein of unknown function compare
PP_4136 -1.1 -1.1 Transcriptional regulator, LuxR family compare
PP_3365 -1.1 -0.8 Acetolactate synthase compare
PP_1224 -1.1 -2.9 periplasmic subunit of the TolQRA transport system compare
PP_4379 -1.1 -2.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2018 -1.1 -2.3 adhesin-associated BNR repeat protein (from data) compare
PP_2737 -1.1 -0.6 Oxidoreductase, short-chain dehydrogenase/reductase family compare


Specific Phenotypes

For 11 genes in this experiment

For pH D-Glucose in Pseudomonas putida KT2440

For pH D-Glucose across organisms