Experiment set11IT078 for Pseudomonas putida KT2440

Compare to:

pH 4

200 most important genes:

  gene name fitness t score description  
PP_4890 -6.1 -4.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_1109 -5.9 -17.9 Transcriptional regulator, GntR family compare
PP_0787 -5.9 -4.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3511 -5.8 -5.7 Branched-chain-amino-acid aminotransferase compare
PP_2388 -5.8 -5.6 Transporter, LysE family compare
PP_0290 -5.7 -3.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1110 -5.7 -4.5 serine acetyltransferase compare
PP_0422 -5.6 -3.8 Indole-3-glycerol phosphate synthase compare
PP_4678 -5.5 -9.2 Ketol-acid reductoisomerase compare
PP_0420 -5.5 -7.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1988 -5.4 -6.4 3-isopropylmalate dehydrogenase compare
PP_5098 -5.4 -5.2 methionine biosynthesis protein MetW compare
PP_4680 -5.3 -7.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0967 -5.3 -3.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5097 -5.2 -8.0 homoserine O-acetyltransferase compare
PP_0901 -5.2 -7.1 DNA-binding response regulator compare
PP_1985 -5.2 -5.0 3-isopropylmalate dehydratase large subunit compare
PP_0293 -5.1 -2.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3790 -5.1 -10.3 diaminopimelate epimerase compare
PP_0966 -5.0 -3.5 Histidinol dehydrogenase compare
PP_5346 -5.0 -6.9 pyruvate carboxylase subunit B compare
PP_2001 -4.9 -10.0 O-succinylhomoserine sulfhydrylase compare
PP_2168 -4.9 -6.7 Transaldolase compare
PP_5347 -4.9 -8.1 pyruvate carboxylase subunit A compare
PP_5076 -4.8 -16.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_1012 -4.6 -3.2 DNA-binding response regulator compare
PP_0902 -4.6 -9.2 integral membrane sensor signal transduction histidine kinase compare
PP_5104 -4.5 -6.2 thiazole synthase compare
PP_1088 -4.5 -3.1 Argininosuccinate synthase compare
PP_0965 -4.5 -9.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1111 -4.5 -8.0 putative Synthetase compare
PP_1348 -4.4 -6.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1995 -4.4 -4.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0292 -4.3 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0421 -4.3 -7.7 Anthranilate phosphoribosyltransferase compare
PP_2371 -4.3 -3.0 Sulphite reductase hemoprotein, beta subunit compare
PP_1231 -4.3 -2.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5348 -4.2 -11.4 Transcriptional regulator, LysR family compare
PP_0417 -4.2 -16.7 Anthranilate synthase component 1 compare
PP_4679 -4.1 -4.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2370 -4.1 -3.7 conserved protein of unknown function compare
PP_2390 -4.1 -7.9 Transcriptional regulator, LysR family compare
PP_5090 -4.0 -2.0 putative cell division protein compare
PP_5075 -4.0 -9.3 glutamate synthase (NADPH) beta subunit compare
PP_1986 -4.0 -2.4 3-isopropylmalate dehydratase small subunit compare
PP_5289 -4.0 -3.9 Acetylglutamate kinase compare
PP_0362 -3.9 -12.5 Biotin synthase compare
PP_1011 -3.9 -8.7 glucokinase compare
PP_1233 -3.9 -2.7 sulfurtransferase compare
PP_5185 -3.8 -2.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4922 -3.8 -11.3 Phosphomethylpyrimidine synthase compare
PP_5155 -3.8 -6.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4726 -3.7 -2.5 Chaperone protein DnaJ compare
PP_3376 -3.7 -8.1 putative phosphonate dehydrogenase compare
PP_3244 -3.7 -3.9 Magnesium transporter, MgtC family compare
PP_0513 -3.7 -2.5 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1017 -3.6 -6.9 mannose/glucose ABC transporter, permease protein compare
PP_3505 -3.6 -3.3 conserved protein of unknown function compare
PP_2645 -3.6 -11.1 magnesium transporter, ATP-dependent compare
PP_0127 -3.6 -6.6 Thiol:disulfide interchange protein compare
PP_1016 -3.6 -10.3 mannose/glucose ABC transporter, permease protein compare
PP_1079 -3.5 -3.4 Ornithine carbamoyltransferase compare
PP_0627 -3.5 -2.6 conserved protein of unknown function compare
PP_5128 -3.5 -7.6 Dihydroxy-acid dehydratase compare
PP_5017 -3.4 -1.0 Sec-independent protein translocase protein TatB compare
PP_0291 -3.4 -4.9 conserved protein of unknown function compare
PP_2327 -3.3 -4.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1018 -3.3 -6.3 mannose/glucose ABC transporter - ATP binding subunit compare
PP_0082 -3.3 -2.2 tryptophan synthase alpha chain compare
PP_2433 -3.2 -3.8 conserved protein of unknown function compare
PP_1015 -3.2 -5.6 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_5303 -3.2 -5.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0289 -3.2 -6.4 Imidazoleglycerol-phosphate dehydratase compare
PP_2646 -3.2 -3.5 conserved protein of unknown function compare
PP_3808 -3.1 -2.2 Antibiotic synthesis protein MbtH compare
PP_4909 -3.1 -3.7 phosphoserine phosphatase compare
PP_3999 -3.1 -3.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4561 -3.0 -0.9 stress response protein compare
PP_4917 -2.9 -5.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1025 -2.9 -9.4 2-isopropylmalate synthase compare
PP_0377 -2.9 -1.6 coenzyme PQQ synthesis protein D compare
PP_0735 -2.8 -1.5 molybdopterin-synthase adenylyltransferase compare
PP_2328 -2.8 -2.7 Phosphoadenosine phosphosulfate reductase compare
PP_2348 -2.7 -4.0 Sensor histidine kinase compare
PP_4937 -2.7 -5.2 toluene tolerance protein compare
PP_4782 -2.6 -3.5 Phosphomethylpyrimidine kinase compare
PP_0852 -2.6 -2.9 Transcriptional regulator, Cro/CI family compare
PP_5015 -2.5 -2.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5327 -2.4 -8.1 putative phosphate ABC transporter, permease subunit compare
PP_4268 -2.4 -1.0 nucleoid-associated broad specificity regulator compare
PP_4897 -2.4 -4.5 N-acetylmuramoyl-L-alanine amidase compare
PP_4723 -2.4 -3.2 Carbamoyl-phosphate synthase large chain compare
PP_5328 -2.4 -3.8 putative phosphate transport system permease protein compare
PP_0435 -2.3 -14.0 Peptidase, M23/M37 family compare
PP_1906 -2.3 -2.7 ribosomal large subunit pseudouridine synthase C compare
PP_1764 -2.3 -5.3 Phosphoglycolate phosphatase 2 compare
PP_1013 -2.2 -4.6 Sensor histidine kinase compare
PP_2414 -2.2 -1.6 conserved exported protein of unknown function compare
PP_4997 -2.2 -1.4 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_5248 -2.1 -1.2 putative hydrolase compare
PP_4482 -2.1 -5.1 Transcriptional regulator, AraC family compare
PP_0809 -2.1 -6.3 disulfide bond formation protein B compare
PP_0184 -2.1 -1.5 Argininosuccinate lyase compare
PP_3649 -2.1 -4.4 Transcriptional regulator, GntR family compare
PP_4701 -2.1 -1.0 glucose-6-phosphate isomerase compare
PP_0855 -2.1 -2.3 conserved protein of unknown function compare
PP_4684 -2.0 -5.8 conserved protein of unknown function with kinase-like domain compare
PP_5202 -2.0 -2.4 putative cell division protein compare
PP_0910 -2.0 -4.6 conserved exported protein of unknown function compare
PP_2442 -2.0 -1.7 conserved protein of unknown function, DUF480 family compare
PP_5453 -2.0 -1.5 conserved protein of unknown function compare
PP_2510 -2.0 -2.6 conserved protein of unknown function compare
PP_3245 -1.9 -1.5 conserved protein of unknown function compare
PP_0913 -1.9 -4.9 conserved exported protein of unknown function compare
PP_0406 -1.9 -5.1 Nucleotidyltransferase family protein compare
PP_4060 -1.9 -9.7 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_0405 -1.9 -12.3 conserved protein of unknown function compare
PP_0434 -1.9 -7.0 Anhydro-N-acetylmuramic acid kinase compare
PP_1355 -1.9 -12.4 Muropeptide permease AmpG compare
PP_1293 -1.8 -1.9 molybdopterin synthase small subunit compare
PP_5014 -1.8 -1.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_4379 -1.8 -3.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1224 -1.8 -4.1 periplasmic subunit of the TolQRA transport system compare
PP_0834 -1.8 -1.3 Sec translocation complex subunit YajC compare
PP_1328 -1.7 -1.7 Protein MraZ compare
PP_2044 -1.7 -1.4 conserved inner membrane protein of unknown function compare
PP_0506 -1.7 -8.8 putative ABC efflux transporter, permease protein compare
PP_0881 -1.7 -4.8 dipeptide ABC transporter - putative membrane subunit compare
PP_1009 -1.7 -4.7 glyceraldehyde-3-phosphate dehydrogenase compare
PP_0978 -1.7 -1.6 conserved protein of unknown function compare
PP_4593 -1.6 -1.1 conserved protein of unknown function compare
PP_5027 -1.6 -2.1 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_2145 -1.6 -4.8 beta-N-acetylglucosaminidase compare
PP_4364 -1.6 -3.1 putative Anti-sigma F factor antagonist compare
PP_1493 -1.6 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4994 -1.6 -2.8 conserved protein of unknown function compare
PP_1237 -1.6 -1.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1898 -1.6 -1.5 MotA/TolQ/ExbB proton channel family protein compare
PP_2345 -1.6 -2.6 conserved exported protein of unknown function compare
PP_4098 -1.5 -0.9 UvrABC system protein C compare
PP_2029 -1.5 -2.0 von Willebrand factor type A domain protein compare
PP_4695 -1.5 -6.8 Sensory box histidine kinase compare
PP_3946 -1.5 -0.8 HTH-type transcriptional repressor NicR compare
PP_2714 -1.4 -3.0 Sensor histidine kinase compare
PP_0909 -1.4 -4.6 conserved exported protein of unknown function compare
PP_5546 -1.4 -2.4 conserved protein of unknown function compare
PP_1779 -1.4 -4.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_t13 -1.4 -1.4 tRNA-Lys compare
PP_1912 -1.4 -2.4 Phosphate acyltransferase compare
PP_2118 -1.4 -1.4 conserved protein of unknown function compare
PP_4738 -1.4 -1.5 conserved exported protein of unknown function compare
PP_5508 -1.3 -1.3 conserved protein of unknown function compare
PP_5216 -1.3 -1.4 exopolyphosphatase compare
PP_2379 -1.3 -2.8 putative cytochrome oxidase biogenesis protein compare
PP_5035 -1.3 -4.5 Histidine utilization repressor compare
PP_3048 -1.3 -2.4 conserved protein of unknown function compare
PP_2809 -1.3 -3.3 conserved membrane protein of unknown function compare
PP_3065 -1.3 -5.7 Pyocin R2_PP, tail formation compare
PP_0319 -1.3 -1.3 conserved protein of unknown function compare
PP_5652 -1.3 -0.8 conserved protein of unknown function, phage origin compare
PP_1763 -1.3 -0.9 putative oxidoreductase compare
PP_4952 -1.3 -1.4 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4700 -1.3 -1.2 pantothenate synthetase compare
PP_0083 -1.3 -1.2 tryptophan synthase beta chain compare
PP_3064 -1.3 -1.0 Phage tail protein compare
PP_2152 -1.3 -1.6 glycerophosphoryl diester phosphodiesterase compare
PP_4058 -1.2 -1.2 1,4-alpha-glucan branching enzyme compare
PP_5674 -1.2 -2.0 conserved protein of unknown function compare
PP_3776 -1.2 -4.2 putative permease (RarD protein) compare
PP_0364 -1.2 -3.9 pimeloyl-[acp] methyl ester esterase compare
PP_2820 -1.2 -1.4 HTH-type transcriptional regulator nfxB compare
PP_t10 -1.2 -1.1 tRNA-Pro compare
PP_5491 -1.2 -2.0 conserved protein of unknown function with SEC-C motif domain compare
PP_1401 -1.2 -3.1 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_4045 -1.2 -1.7 conserved protein of unknown function compare
PP_0694 -1.2 -3.0 conserved protein of unknown function compare
PP_4642 -1.2 -0.5 Cyclic diguanosine monophosphate-binding protein compare
PP_3787 -1.2 -3.8 conserved protein of unknown function compare
PP_1778 -1.2 -4.0 Lipopolysaccharide ABC export system, permease protein compare
PP_3766 -1.2 -2.3 Lactoylglutathione lyase compare
PP_0188 -1.2 -3.3 putative Uroporphyrin-III C-methyltransferase compare
PP_5SB -1.1 -1.4 5S ribosomal RNA compare
PP_1185 -1.1 -3.0 Outer membrane protein H1 compare
PP_0120 -1.1 -3.2 putative zinc ABC transporter compare
PP_2153 -1.1 -2.0 conserved protein of unknown function compare
PP_5628 -1.1 -2.0 conserved protein of unknown function compare
PP_3833 -1.1 -1.8 Response regulator compare
PP_3034 -1.1 -1.9 putative Regulator protein compare
PP_4940 -1.1 -4.3 Putative glycosyltransferase compare
PP_5321 -1.1 -3.3 two-component system sensory histidine kinase compare
PP_5500 -1.1 -2.6 protein of unknown function compare
PP_0232 -1.1 -0.8 ATP-binding taurine transporter subunit compare
PP_1426 -1.1 -4.9 L-aspartate oxidase compare
PP_0914 -1.1 -4.8 GGDEF domain protein compare
PP_1020 -1.1 -0.7 putative glucose-6-phosphate 1-epimerase compare
PP_0949 -1.1 -3.4 putative ATP-binding protein UPF0042 compare
PP_1063 -1.1 -4.4 DNA-binding transcriptional regulator, homocysteine-binding compare
PP_0612 -1.1 -3.5 FAD-dependent glycine/D-amino acid oxidase compare
PP_0758 -1.1 -2.4 conserved protein of unknown function compare
PP_3341 -1.1 -2.9 nickel-responsive regulator compare


Specific Phenotypes

For 8 genes in this experiment

For pH D-Glucose in Pseudomonas putida KT2440

For pH D-Glucose across organisms