Experiment set11IT078 for Pseudomonas putida KT2440

Compare to:

pH 4

200 most detrimental genes:

  gene name fitness t score description  
PP_0593 +3.8 1.1 putative ribosome-binding factor compare
PP_1656 +3.1 12.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_t29 +2.9 1.6 tRNA-Ala compare
PP_1655 +2.7 8.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4373 +2.7 14.7 Transcriptional regulator FleQ compare
PP_1824 +2.6 1.0 Smr domain protein compare
PP_4519 +2.3 12.9 Agglutination protein compare
PP_0166 +2.3 13.8 HlyD family secretion protein compare
PP_0086 +2.2 2.2 conserved protein of unknown function compare
PP_2889 +2.1 6.0 putative Transmembrane regulator PrtR compare
PP_1113 +2.1 10.7 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0168 +2.1 16.0 putative surface adhesion protein compare
PP_0167 +2.1 15.2 Toxin secretion ATP-binding protein compare
PP_2210 +2.0 4.9 LysR family transcriptional regulator compare
PP_0236 +2.0 2.2 NAD(P)H-dependent FMN reductase subunit compare
PP_0630 +2.0 1.2 DNA gyrase inhibitor YacG compare
PP_3926 +1.8 2.6 short-chain dehydrogenase compare
PP_4517 +1.7 1.5 conserved protein of unknown function compare
PP_1575 +1.7 2.2 conserved protein of unknown function compare
PP_5225 +1.6 1.1 frataxin compare
PP_4879 +1.6 2.6 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_3409 +1.6 2.1 putative Cobalamin biosynthesis protein cobE compare
PP_4925 +1.5 3.6 conserved protein of unknown function compare
PP_2025 +1.5 1.9 Exonuclease SbcD compare
PP_1650 +1.4 9.6 Sensor protein GacS compare
PP_1008 +1.4 1.5 RNA polymerase subunit sigma-24 compare
PP_2387 +1.4 3.7 conserved protein of unknown function compare
PP_4271 +1.4 0.9 conserved protein of unknown function compare
PP_5483 +1.3 2.0 conserved protein of unknown function compare
PP_0750 +1.3 3.4 conserved protein of unknown function compare
PP_4296 +1.3 2.2 conserved exported protein of unknown function compare
PP_0848 +1.3 2.4 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4662 +1.3 2.8 conserved protein of unknown function compare
PP_2764 +1.3 2.5 FMN reductase (NADPH) compare
PP_t11 +1.3 1.5 tRNA-Lys compare
PP_4710 +1.3 6.3 tRNA pseudouridine 55 synthase compare
PP_1454 +1.3 1.3 conserved protein of unknown function compare
PP_4156 +1.3 1.6 Transcriptional regulator, LysR family compare
PP_4099 +1.3 8.8 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1048 +1.2 1.5 putative protein secretion protein for export compare
PP_3378 +1.2 1.7 putative 2-ketogluconokinase compare
PP_4171 +1.2 5.1 conserved exported protein of unknown function compare
PP_2416 +1.2 1.6 putative Iron ABC transporter, ATP-binding protein compare
PP_1455 +1.2 2.3 conserved protein of unknown function compare
PP_3447 +1.2 1.0 conserved membrane protein of unknown function compare
PP_4100 +1.2 5.0 Transcriptional regulator, Cro/CI family compare
PP_5429 +1.2 3.2 protein of unknown function compare
PP_5471 +1.2 1.4 putative response regulator receiver protein compare
PP_0307 +1.2 1.8 conserved exported protein of unknown function compare
PP_4532 +1.1 0.9 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2568 +1.1 0.9 Ring-cleaving dioxygenase compare
PP_0094 +1.1 2.5 5'-nucleotidase compare
PP_2499 +1.1 1.2 conserved protein of unknown function compare
PP_0152 +1.1 1.5 conserved exported protein of unknown function compare
PP_2794 +1.1 1.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_2682 +1.1 2.8 Fe-containing alcohol dehydrogenase compare
PP_1004 +1.1 2.2 conserved protein of unknown function compare
PP_4139 +1.1 2.9 conserved protein of unknown function compare
PP_1515 +1.1 4.8 Transcriptional regulator, tetR family compare
PP_2668 +1.1 1.5 ABC efflux transporter, ATP-binding protein compare
PP_4787 +1.1 2.9 putative protein with nucleoside triphosphate hydrolase domain compare
PP_5572 +1.1 1.6 protein of unknown function compare
PP_5156 +1.1 2.2 conserved exported protein of unknown function compare
PP_2306 +1.1 1.8 conserved exported protein of unknown function compare
PP_3770 +1.0 1.8 conserved protein of unknown function compare
PP_4313 +1.0 2.9 putative peptidylprolyl isomerase compare
PP_5143 +1.0 3.0 conserved membrane protein of unknown function compare
PP_2720 +1.0 1.0 conserved protein of unknown function compare
PP_5157 +1.0 2.8 conserved exported protein of unknown function compare
PP_3256 +1.0 3.4 Glycosyl transferase, group 2 family protein compare
PP_4814 +1.0 1.4 ATP-dependent protease La domain protein compare
PP_1124 +1.0 2.0 conserved membrane protein of unknown function compare
PP_2253 +1.0 1.1 Transcriptional regulator, GntR family compare
PP_1026 +1.0 1.3 Peptidase, M23/M37 family compare
PP_0385 +1.0 2.1 putative serine acetyltransferase compare
PP_0827 +1.0 1.5 putative phosphonate transport system permease protein PtxC compare
PP_1428 +1.0 1.1 Sigma factor AlgU negative regulatory protein compare
PP_4721 +1.0 2.8 conserved membrane protein of unknown function compare
PP_1568 +1.0 0.8 conserved protein of unknown function compare
PP_3564 +1.0 2.0 Transcriptional regulator, AraC family compare
PP_1153 +1.0 1.3 putative lipoprotein compare
PP_1322 +1.0 1.1 putative Lipoprotein compare
PP_4808 +1.0 0.8 23S rRNA m3psi1915 methyltransferase compare
PP_2683 +1.0 3.8 putative sensory box histidine kinase/response regulator compare
PP_0574 +1.0 6.4 DNA-binding response regulator, LuxR family compare
PP_1552 +1.0 1.5 putative Phage replication protein compare
PP_1096 +1.0 1.6 putative electron transport complex protein compare
PP_t12 +0.9 0.3 tRNA-Thr compare
PP_2804 +0.9 1.5 Hydrolase, alpha/beta fold family compare
PP_5153 +0.9 2.7 putative isomerase/hydrolase compare
PP_0355 +0.9 1.8 Response regulator compare
PP_2857 +0.9 0.8 conserved exported protein of unknown function compare
PP_1410 +0.9 0.8 conserved protein of unknown function compare
PP_0674 +0.9 5.8 ADP/ATP ratio sensor and inhibitor of translation compare
PP_4559 +0.9 1.9 peptide deformylase compare
PP_5093 +0.9 1.2 twitching motility protein compare
PP_1112 +0.9 4.1 conserved membrane protein of unknown function compare
PP_5686 +0.9 1.4 protein of unknown function compare
PP_1875 +0.9 4.1 Sensor histidine kinase/response regulator compare
PP_4390 +0.9 3.3 flagellar basal-body rod protein FlgC compare
PP_0663 +0.9 2.0 Transcriptional regulator, AsnC family compare
PP_4265 +0.9 1.4 DNA-binding transcriptional dual regulator compare
PP_3398 +0.9 1.9 putative Curli fiber surface-exposed nucleator CsgB compare
PP_0556 +0.9 1.8 Acetoin catabolism protein compare
PP_5240 +0.9 1.4 Response regulator compare
PP_1657 +0.9 2.0 modified nucleoside triphosphate pyrophosphohydrolase compare
PP_4094 +0.9 1.4 conserved protein of unknown function compare
PP_5717 +0.9 0.8 conserved protein of unknown function compare
PP_3461 +0.9 3.2 quinohemoprotein amine dehydrogenase modification protein compare
PP_0616 +0.9 2.0 Branched-chain amino acid ABC transporter, ATP binding protein compare
PP_0989 +0.9 2.0 glycine cleavage system H protein 1 compare
PP_4231 +0.9 2.7 putative Xanthine dehydrogenase accessory factor compare
PP_4847 +0.9 1.6 chaperone modulatory of CbpA co-chaperone protein compare
PP_4760 +0.9 2.1 Alcohol dehydrogenase, zinc-containing compare
PP_2750 +0.9 1.5 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_2121 +0.9 1.1 putative Lipoprotein compare
PP_2655 +0.9 2.0 conserved protein of unknown function compare
PP_2078 +0.9 1.5 transcriptional activator protein LysR compare
PP_3693 +0.9 1.8 putative Transcriptional regulator MvaT, P16 subunit compare
PP_2756 +0.9 1.8 conserved protein of unknown function compare
PP_3363 +0.8 2.5 putative thymidylate kinase compare
PP_4386 +0.8 2.4 flagellar basal-body rod protein FlgF compare
PP_5621 +0.8 1.3 protein of unknown function compare
PP_3233 +0.8 2.0 transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family compare
PP_5543 +0.8 2.4 protein of unknown function compare
PP_4385 +0.8 3.2 flagellar basal-body rod protein FlgG compare
PP_1994 +0.8 0.9 tRNA pseudouridine (38-40)synthase compare
PP_0492 +0.8 3.0 formate dehydrogenase formation protein compare
PP_2864 +0.8 1.5 conserved protein of unknown function compare
PP_3238 +0.8 1.9 putative Transcriptional regulator PyrR compare
PP_t49 +0.8 2.1 tRNA-Met compare
PP_2403 +0.8 1.0 Chemotaxis protein CheY compare
PP_2615 +0.8 1.6 hemolysin-coregulated protein compare
PP_3831 +0.8 2.5 conserved protein of unknown function compare
PP_2927 +0.8 2.4 conserved protein of unknown function compare
PP_1774 +0.8 1.0 conserved exported protein of unknown function compare
PP_0165 +0.8 5.3 GGDEF domain protein compare
PP_5537 +0.8 1.7 conserved membrane protein of unknown function compare
PP_2107 +0.8 1.0 conserved protein of unknown function compare
PP_5640 +0.8 1.3 conserved protein of unknown function compare
PP_2898 +0.8 0.8 conserved exported protein of unknown function compare
PP_4868 +0.8 2.4 Nicotinate phosphoribosyltransferase compare
PP_4555 +0.8 1.5 conserved protein of unknown function compare
PP_2832 +0.8 2.5 galactose-binding protein regulator compare
PP_2417 +0.8 1.7 putative Iron ABC transporter, permease protein compare
PP_2108 +0.8 3.2 conserved protein of unknown function compare
PP_5422 +0.8 1.2 hypothetical protein compare
PP_4377 +0.8 1.7 putative Flagellin FlaG compare
PP_5103 +0.8 2.8 tRNA (guanine-N(7)-)-methyltransferase compare
PP_0830 +0.8 3.8 Acetyltransferase, GNAT family compare
PP_1392 +0.8 3.2 putative NAD-binding protein compare
PP_1697 +0.8 1.2 transcriptional regulator, GntR family compare
PP_5186 +0.8 2.9 acetylornithine deacetylase compare
PP_4356 +0.8 1.7 Flagellar protein FliO compare
PP_3837 +0.8 1.4 inner membrane protein of unknown function compare
PP_5255 +0.8 1.5 putative hydrolase compare
PP_2923 +0.8 1.8 conserved protein of unknown function compare
PP_2665 +0.8 2.3 Glycerol metabolism activator compare
PP_2633 +0.8 0.8 conserved protein of unknown function compare
PP_0737 +0.8 1.4 lipid A 3-O-deacylase compare
PP_5221 +0.7 1.7 conserved protein of unknown function, UPF0178 family compare
PP_5519 +0.7 1.1 conserved protein of unknown function of phage origin compare
PP_1895 +0.7 2.2 putative ABC transporter - ATP binding subunit compare
PP_5574 +0.7 2.4 conserved protein of unknown function compare
PP_1678 +0.7 2.0 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_2455 +0.7 2.8 ribose ABC transporter - ATP-binding subunit compare
PP_5224 +0.7 1.8 conserved protein of unknown function compare
PP_4237 +0.7 2.9 periplasmic protein disulfide isomerase compare
PP_1218 +0.7 1.8 putative acyl-CoA thioesterase compare
PP_5456 +0.7 1.2 conserved protein of unknown function compare
PP_1028 +0.7 1.2 Transcriptional regulator, LysR family compare
PP_5201 +0.7 2.0 conserved protein of unknown function, UPF0149 family compare
PP_2933 +0.7 3.1 GSH-dependent disulfide bond oxidoreductase compare
PP_4918 +0.7 2.9 conserved protein of unknown function compare
PP_2549 +0.7 2.1 conserved protein of unknown function compare
PP_4162 +0.7 1.8 conserved membrane protein of unknown function compare
PP_1249 +0.7 2.0 conserved protein of unknown function, DUF4223 family compare
PP_1909 +0.7 2.1 putative septum formation protein compare
PP_3480 +0.7 1.6 conserved protein of unknown function compare
PP_5315 +0.7 1.0 Rubredoxin-1 compare
PP_0794 +0.7 2.0 1-phosphofructokinase monomer compare
PP_4384 +0.7 3.3 Flagellar L-ring protein compare
PP_3488 +0.7 2.2 Sco1/SenC family protein compare
PP_1742 +0.7 1.5 conserved inner membrane protein of unknown function compare
PP_2806 +0.7 1.7 Transcriptional regulator, TetR family compare
PP_4018 +0.7 1.2 Acetyltransferase, GNAT family compare
PP_3083 +0.7 2.1 putative Membrane protein compare
PP_0536 +0.7 1.4 conserved protein of unknown function compare
PP_2036 +0.7 1.9 putative 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2530 +0.7 1.4 conserved protein of unknown function compare
PP_0195 +0.7 0.7 conserved protein of unknown function compare
PP_5393 +0.7 0.7 putative metal-binding chaperone compare
PP_1445 +0.7 3.6 carbohydrate-selective porin compare
PP_4846 +0.7 1.4 L-amino acid N-acyltransferase compare
PP_3969 +0.7 2.0 Response regulator compare
PP_5705 +0.7 1.2 protein of unknown function compare
PP_2500 +0.7 1.5 conserved protein of unknown function compare
PP_5100 +0.7 0.8 dITP/XTP pyrophosphatase compare
PP_0182 +0.7 1.4 conserved protein of unknown function compare
PP_1684 +0.7 2.4 putative Transporter compare


Specific Phenotypes

For 8 genes in this experiment

For pH D-Glucose in Pseudomonas putida KT2440

For pH D-Glucose across organisms