Experiment set11IT076 for Pseudomonas putida KT2440

Compare to:

carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM

200 most detrimental genes:

  gene name fitness t score description  
PP_t29 +3.4 1.9 tRNA-Ala compare
PP_1656 +3.3 13.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_2889 +3.1 6.7 putative Transmembrane regulator PrtR compare
PP_1655 +3.0 8.5 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4171 +2.6 12.3 conserved exported protein of unknown function compare
PP_4532 +2.3 2.0 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4373 +2.2 11.4 Transcriptional regulator FleQ compare
PP_t11 +2.1 2.0 tRNA-Lys compare
PP_1824 +2.1 0.8 Smr domain protein compare
PP_2210 +2.0 4.5 LysR family transcriptional regulator compare
PP_0086 +2.0 1.2 conserved protein of unknown function compare
PP_5145 +1.9 17.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2121 +1.8 2.9 putative Lipoprotein compare
PP_0168 +1.8 13.9 putative surface adhesion protein compare
PP_0167 +1.7 12.2 Toxin secretion ATP-binding protein compare
PP_2499 +1.7 2.1 conserved protein of unknown function compare
PP_0166 +1.7 9.8 HlyD family secretion protein compare
PP_4519 +1.6 9.1 Agglutination protein compare
PP_1113 +1.6 8.8 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4836 +1.6 1.4 conserved exported protein of unknown function compare
PP_1571 +1.6 3.5 conserved protein of unknown function compare
PP_5229 +1.5 2.6 conserved protein of unknown function compare
PP_5583 +1.5 1.5 conserved protein of unknown function compare
PP_5537 +1.5 4.2 conserved membrane protein of unknown function compare
PP_2720 +1.5 1.5 conserved protein of unknown function compare
PP_1410 +1.5 1.4 conserved protein of unknown function compare
PP_1097 +1.5 1.5 Methionine--tRNA ligase compare
PP_3831 +1.4 3.6 conserved protein of unknown function compare
PP_0307 +1.4 1.7 conserved exported protein of unknown function compare
PP_0165 +1.4 9.7 GGDEF domain protein compare
PP_0574 +1.4 9.3 DNA-binding response regulator, LuxR family compare
PP_3971 +1.4 1.6 conserved protein of unknown function compare
PP_4223 +1.4 1.5 diaminobutyrate-2-oxoglutarate transaminase compare
PP_0848 +1.4 2.3 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1096 +1.4 2.1 putative electron transport complex protein compare
PP_4710 +1.4 7.1 tRNA pseudouridine 55 synthase compare
PP_2341 +1.3 1.8 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_2025 +1.3 1.4 Exonuclease SbcD compare
PP_5483 +1.3 1.8 conserved protein of unknown function compare
PP_0355 +1.3 3.7 Response regulator compare
PP_5471 +1.3 1.2 putative response regulator receiver protein compare
PP_1454 +1.3 2.0 conserved protein of unknown function compare
PP_1650 +1.3 7.4 Sensor protein GacS compare
PP_0719 +1.3 0.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1124 +1.2 2.5 conserved membrane protein of unknown function compare
PP_1445 +1.2 5.4 carbohydrate-selective porin compare
PP_2899 +1.2 1.4 conserved exported protein of unknown function compare
PP_5279 +1.2 2.3 conserved protein of unknown function compare
PP_0962 +1.2 1.5 toluene-tolerance protein compare
PP_2337 +1.2 0.8 aconitate isomerase compare
PP_1903 +1.2 2.1 putative phosphotyrosine-protein phosphatase compare
PP_1153 +1.2 1.7 putative lipoprotein compare
PP_0001 +1.1 0.6 probable chromosome-partitioning protein compare
PP_0750 +1.1 2.7 conserved protein of unknown function compare
PP_4875 +1.1 3.1 conserved membrane protein of unknown function compare
PP_5053 +1.1 3.6 Protein-export protein SecB compare
PP_0794 +1.1 2.5 1-phosphofructokinase monomer compare
PP_4271 +1.1 0.7 conserved protein of unknown function compare
PP_5621 +1.1 2.0 protein of unknown function compare
PP_0206 +1.1 3.3 Ferredoxin, 4Fe-4S compare
PP_3861 +1.1 2.7 Phage FluMu protein gp46 compare
PP_5359 +1.1 0.9 CobW/P47K family protein compare
PP_0025 +1.1 1.4 hypothetical protein compare
PP_2857 +1.1 1.8 conserved exported protein of unknown function compare
PP_4769 +1.1 2.1 conserved protein of unknown function compare
PP_5519 +1.1 2.6 conserved protein of unknown function of phage origin compare
PP_0674 +1.1 6.8 ADP/ATP ratio sensor and inhibitor of translation compare
PP_3248 +1.1 1.1 Dyp-type peroxidase family protein compare
PP_0737 +1.1 3.5 lipid A 3-O-deacylase compare
PP_0509 +1.1 2.5 conserved protein of unknown function compare
PP_5549 +1.1 4.0 conserved protein of unknown function compare
PP_1055 +1.0 0.8 Type II secretion pathway protein GspN compare
PP_5146 +1.0 5.2 RNA pyrophosphohydrolase compare
PP_5735 +1.0 2.2 conserved hypothetical protein compare
PP_4099 +1.0 7.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1546 +1.0 3.1 conserved protein of unknown function compare
PP_1553 +1.0 0.9 conserved protein of unknown function compare
PP_1527 +1.0 3.5 tRNA threonylcarbamoyladenosine dehydratase (t(6)A37 dehydratase) compare
PP_1774 +1.0 1.7 conserved exported protein of unknown function compare
PP_3866 +1.0 2.0 conserved protein of unknown function compare
PP_5473 +1.0 1.2 putative transcriptional regulator, LuxR family compare
PP_1459 +1.0 2.3 CBS domain protein compare
PP_4389 +1.0 4.4 Flagellar basal-body rod modification protein FlgD compare
PP_2750 +1.0 1.8 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_2455 +1.0 3.5 ribose ABC transporter - ATP-binding subunit compare
PP_2715 +1.0 2.1 ArsH protein compare
PP_1428 +1.0 1.0 Sigma factor AlgU negative regulatory protein compare
PP_5157 +1.0 2.6 conserved exported protein of unknown function compare
PP_4384 +1.0 4.4 Flagellar L-ring protein compare
PP_2142 +1.0 1.3 Cell division inhibitor SulA compare
PP_5240 +1.0 2.1 Response regulator compare
PP_2972 +1.0 1.1 conserved protein of unknown function compare
PP_1568 +0.9 0.8 conserved protein of unknown function compare
PP_0856 +0.9 0.8 conserved lipoprotein of unknown function compare
PP_0195 +0.9 0.8 conserved protein of unknown function compare
PP_1657 +0.9 2.7 modified nucleoside triphosphate pyrophosphohydrolase compare
PP_3643 +0.9 1.8 putative Oxidoreductase compare
PP_4925 +0.9 2.3 conserved protein of unknown function compare
PP_5429 +0.9 2.6 protein of unknown function compare
PP_2759 +0.9 2.4 ribose ABC transporter - ATP-binding subunit compare
PP_3434 +0.9 2.1 conserved protein of unknown function compare
PP_2568 +0.9 0.7 Ring-cleaving dioxygenase compare
PP_5144 +0.9 2.0 conserved protein of unknown function compare
PP_3211 +0.9 1.6 ABC transporter, ATP-binding protein compare
PP_2793 +0.9 2.1 Acyl-CoA dehydrogenase family protein compare
PP_0632 +0.9 2.5 leader peptidase/N-methyltransferase compare
PP_4662 +0.9 1.5 conserved protein of unknown function compare
PP_t13 +0.9 1.4 tRNA-Lys compare
PP_0703 +0.9 2.0 putative Transmembrane sensor compare
PP_2883 +0.9 1.3 conserved protein of unknown function compare
PP_3770 +0.9 1.3 conserved protein of unknown function compare
PP_3409 +0.9 1.1 putative Cobalamin biosynthesis protein cobE compare
PP_1038 +0.9 1.1 conserved protein of unknown function compare
PP_2764 +0.9 1.7 FMN reductase (NADPH) compare
PP_1742 +0.9 1.9 conserved inner membrane protein of unknown function compare
PP_2247 +0.9 1.4 putative Endoribonuclease compare
PP_5594 +0.9 1.3 conserved protein of unknown function compare
PP_5712 +0.9 1.2 conserved protein of unknown function compare
PP_3635 +0.9 2.8 putative Sulfonate ABC transporter, permease protein compare
PP_0806 +0.9 7.2 putative Surface adhesion protein compare
PP_0827 +0.9 1.5 putative phosphonate transport system permease protein PtxC compare
PP_2773 +0.9 0.5 conserved protein of unknown function compare
PP_1322 +0.8 0.9 putative Lipoprotein compare
PP_0633 +0.8 1.4 Type 4 fimbrial assembly protein PilC compare
PP_4910 +0.8 0.6 conserved protein of unknown function compare
PP_2826 +0.8 1.0 Transcriptional regulator MexT compare
PP_5038 +0.8 1.8 conserved lipoprotein of unknown function compare
PP_0126 +0.8 1.8 Cytochrome c4 compare
PP_t49 +0.8 2.9 tRNA-Met compare
PP_2858 +0.8 1.6 conserved exported protein of unknown function compare
PP_0368 +0.8 4.6 putative Acyl-CoA dehydrogenase compare
PP_1404 +0.8 2.0 conserved protein of unknown function compare
PP_5393 +0.8 0.9 putative metal-binding chaperone compare
PP_3073 +0.8 3.0 3-hydroxybutyrate dehydrogenase compare
PP_3632 +0.8 3.2 Transcriptional regulator, LysR family compare
PP_4100 +0.8 3.5 Transcriptional regulator, Cro/CI family compare
PP_3926 +0.8 0.7 short-chain dehydrogenase compare
PP_5225 +0.8 0.5 frataxin compare
PP_0994 +0.8 2.9 putative RNA polymerase sigma factor compare
PP_0411 +0.8 2.4 Polyamine ABC transporter, ATP-binding protein compare
PP_2804 +0.8 1.5 Hydrolase, alpha/beta fold family compare
PP_4391 +0.8 2.7 flagellar basal-body rod protein FlgB compare
PP_2675 +0.8 1.5 Cytochrome c-type protein compare
PP_4352 +0.8 4.7 flagellin export apparatus, substrate specificity protein compare
PP_2387 +0.8 2.1 conserved protein of unknown function compare
PP_4173 +0.8 3.9 Sensor histidine kinase/response regulator compare
PP_1947 +0.8 3.0 conserved protein of unknown function compare
PP_3204 +0.8 1.4 conserved protein of unknown function compare
PP_2724 +0.8 2.3 conserved protein of unknown function compare
PP_0177 +0.8 1.8 conserved protein of unknown function compare
PP_4868 +0.8 2.3 Nicotinate phosphoribosyltransferase compare
PP_2200 +0.8 3.8 conserved protein of unknown function compare
PP_3743 +0.8 2.2 conserved exported protein of unknown function compare
PP_3117 +0.8 0.8 putative protein involved in error-prone processing of DNA lesions compare
PP_1138 +0.8 2.0 branched chain amino acid transporter - ATP binding subunit compare
PP_2999 +0.8 0.8 Glyoxalase family protein compare
PP_5675 +0.8 1.6 conserved protein of unknown function compare
PP_3761 +0.8 4.9 Sensor histidine kinase/response regulator compare
PP_4199 +0.8 0.5 putative Lipoprotein compare
PP_0804 +0.8 3.2 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_4386 +0.8 2.4 flagellar basal-body rod protein FlgF compare
PP_1392 +0.8 2.0 putative NAD-binding protein compare
PP_4124 +0.8 0.7 NADH-quinone oxidoreductase subunit G compare
PP_3400 +0.8 2.1 alpha-ketoglutarate- and Fe(II)-dependent dioxygenase compare
PP_1241 +0.8 1.4 conserved protein of unknown function compare
PP_4642 +0.7 0.5 Cyclic diguanosine monophosphate-binding protein compare
PP_4129 +0.7 0.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0220 +0.7 1.5 methionine import ATP-binding protein metN2 compare
PP_0122 +0.7 1.0 conserved exported protein of unknown function compare
PP_0679 +0.7 2.9 conserved exported protein of unknown function compare
PP_0150 +0.7 1.4 conserved exported protein of unknown function compare
PP_2243 +0.7 2.1 conserved protein of unknown function compare
PP_1633 +0.7 1.9 conserved exported protein of unknown function compare
PP_4365 +0.7 1.7 Flagellar protein FliJ compare
PP_0919 +0.7 1.4 conserved protein of unknown function compare
PP_1214 +0.7 0.7 putative transcriptional regulatory protein compare
PP_5005 +0.7 4.2 Poly(3-hydroxyalkanoate) polymerase 2 compare
PP_5439 +0.7 2.0 conserved protein of unknown function compare
PP_0152 +0.7 0.9 conserved exported protein of unknown function compare
PP_0725 +0.7 2.2 conserved hypothetical TPR repeat protein compare
PP_0775 +0.7 1.2 conserved protein of unknown function compare
PP_0959 +0.7 0.7 phospholipid ABC transporter compare
PP_5231 +0.7 2.6 putative (S)-2-haloacid dehalogenase compare
PP_4390 +0.7 2.9 flagellar basal-body rod protein FlgC compare
PP_3058 +0.7 1.8 conserved protein of unknown function compare
PP_5522 +0.7 2.2 protein of unknown function compare
PP_2081 +0.7 2.7 putative phosphoenolpyruvate synthase regulatory protein compare
PP_2832 +0.7 2.4 galactose-binding protein regulator compare
PP_5661 +0.7 1.1 putative lipoprotein compare
PP_2661 +0.7 1.8 conserved protein of unknown function compare
PP_0534 +0.7 1.5 putative Transcriptional regulator PfeR compare
PP_2765 +0.7 0.6 putative Sulfonate monooxygenase MsuD compare
PP_4964 +0.7 1.3 D-erythrose 4-phosphate dehydrogenase compare
PP_4406 +0.7 1.7 conserved protein of unknown function compare
PP_4904 +0.7 2.6 Flagellar motor rotation protein compare
PP_3684 +0.7 1.8 conserved protein of unknown function compare
PP_4799 +0.7 0.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2309 +0.7 1.0 conserved protein of unknown function compare
PP_2520 +0.7 1.5 conserved protein of unknown function compare
PP_5445 +0.7 0.6 conserved protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Xylose in Pseudomonas putida KT2440

For carbon source D-Xylose across organisms