Experiment set11IT074 for Pseudomonas putida KT2440

Compare to:

carbon source Bisabolol 45 mM

200 most important genes:

  gene name fitness t score description  
PP_4890 -5.8 -4.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_0787 -5.6 -3.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0290 -5.5 -3.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_3511 -5.4 -3.8 Branched-chain-amino-acid aminotransferase compare
PP_4678 -5.1 -9.9 Ketol-acid reductoisomerase compare
PP_1988 -5.1 -3.5 3-isopropylmalate dehydrogenase compare
PP_4922 -5.1 -8.5 Phosphomethylpyrimidine synthase compare
PP_5097 -5.0 -6.0 homoserine O-acetyltransferase compare
PP_4680 -5.0 -6.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0967 -5.0 -4.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0422 -5.0 -4.8 Indole-3-glycerol phosphate synthase compare
PP_3790 -5.0 -8.3 diaminopimelate epimerase compare
PP_1110 -4.9 -5.8 serine acetyltransferase compare
PP_0293 -4.9 -3.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5098 -4.9 -5.8 methionine biosynthesis protein MetW compare
PP_1109 -4.9 -13.2 Transcriptional regulator, GntR family compare
PP_0120 -4.7 -8.4 putative zinc ABC transporter compare
PP_1985 -4.6 -4.5 3-isopropylmalate dehydratase large subunit compare
PP_5104 -4.6 -5.5 thiazole synthase compare
PP_0966 -4.6 -5.4 Histidinol dehydrogenase compare
PP_0420 -4.6 -10.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5348 -4.4 -11.6 Transcriptional regulator, LysR family compare
PP_2168 -4.4 -4.3 Transaldolase compare
PP_1348 -4.3 -6.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5303 -4.3 -4.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2001 -4.3 -9.1 O-succinylhomoserine sulfhydrylase compare
PP_3376 -4.2 -7.0 putative phosphonate dehydrogenase compare
PP_5347 -4.2 -8.9 pyruvate carboxylase subunit A compare
PP_0292 -4.2 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0965 -4.1 -8.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1111 -4.1 -7.8 putative Synthetase compare
PP_0417 -4.1 -14.8 Anthranilate synthase component 1 compare
PP_1088 -4.1 -4.8 Argininosuccinate synthase compare
PP_1995 -4.0 -2.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1231 -3.9 -2.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5346 -3.8 -7.7 pyruvate carboxylase subunit B compare
PP_2645 -3.8 -7.3 magnesium transporter, ATP-dependent compare
PP_0117 -3.7 -6.1 Zn(2+) ABC transporter - permease subunit compare
PP_3244 -3.7 -2.5 Magnesium transporter, MgtC family compare
PP_5289 -3.7 -3.5 Acetylglutamate kinase compare
PP_0291 -3.6 -4.2 conserved protein of unknown function compare
PP_4679 -3.6 -4.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0421 -3.6 -8.6 Anthranilate phosphoribosyltransferase compare
PP_2371 -3.6 -2.5 Sulphite reductase hemoprotein, beta subunit compare
PP_2388 -3.5 -6.0 Transporter, LysE family compare
PP_1079 -3.5 -2.4 Ornithine carbamoyltransferase compare
PP_2348 -3.4 -5.2 Sensor histidine kinase compare
PP_5076 -3.4 -18.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_0362 -3.4 -13.3 Biotin synthase compare
PP_0735 -3.4 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_1986 -3.4 -2.3 3-isopropylmalate dehydratase small subunit compare
PP_5075 -3.2 -10.3 glutamate synthase (NADPH) beta subunit compare
PP_5155 -3.2 -5.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1233 -3.2 -3.8 sulfurtransferase compare
PP_4917 -3.2 -3.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0289 -3.1 -6.3 Imidazoleglycerol-phosphate dehydratase compare
PP_4937 -3.1 -3.6 toluene tolerance protein compare
PP_5185 -3.0 -3.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2327 -3.0 -3.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5128 -3.0 -6.5 Dihydroxy-acid dehydratase compare
PP_0082 -2.9 -2.0 tryptophan synthase alpha chain compare
PP_2390 -2.9 -7.3 Transcriptional regulator, LysR family compare
PP_4782 -2.9 -2.0 Phosphomethylpyrimidine kinase compare
PP_2370 -2.8 -3.0 conserved protein of unknown function compare
PP_4909 -2.8 -2.7 phosphoserine phosphatase compare
PP_3999 -2.7 -1.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4684 -2.7 -4.9 conserved protein of unknown function with kinase-like domain compare
PP_5015 -2.7 -1.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2433 -2.7 -3.7 conserved protein of unknown function compare
PP_2646 -2.6 -3.2 conserved protein of unknown function compare
PP_1025 -2.5 -8.8 2-isopropylmalate synthase compare
PP_1063 -2.4 -8.2 DNA-binding transcriptional regulator, homocysteine-binding compare
PP_4897 -2.3 -4.6 N-acetylmuramoyl-L-alanine amidase compare
PP_3245 -2.3 -1.1 conserved protein of unknown function compare
PP_1293 -2.2 -2.7 molybdopterin synthase small subunit compare
PP_0506 -2.2 -11.7 putative ABC efflux transporter, permease protein compare
PP_0261 -2.2 -5.1 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_2328 -2.1 -1.4 Phosphoadenosine phosphosulfate reductase compare
PP_1426 -2.1 -12.6 L-aspartate oxidase compare
PP_5508 -2.1 -1.8 conserved protein of unknown function compare
PP_2060 -2.0 -1.5 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_3443 -1.9 -7.1 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_5331 -1.9 -3.5 Long-chain acyl-CoA thioester hydrolase compare
PP_5453 -1.9 -2.2 conserved protein of unknown function compare
PP_1779 -1.9 -5.6 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0127 -1.8 -5.6 Thiol:disulfide interchange protein compare
PP_0758 -1.8 -4.4 conserved protein of unknown function compare
PP_4009 -1.7 -3.6 ATP-dependent Clp protease adapter protein ClpS compare
PP_2714 -1.7 -3.9 Sensor histidine kinase compare
PP_0184 -1.7 -1.7 Argininosuccinate lyase compare
PP_5328 -1.7 -5.3 putative phosphate transport system permease protein compare
PP_0435 -1.7 -10.6 Peptidase, M23/M37 family compare
PP_4994 -1.6 -3.1 conserved protein of unknown function compare
PP_3417 -1.6 -3.7 D-gluconate transporter compare
PP_1912 -1.6 -1.9 Phosphate acyltransferase compare
PP_1355 -1.6 -12.8 Muropeptide permease AmpG compare
PP_4723 -1.6 -1.5 Carbamoyl-phosphate synthase large chain compare
PP_4268 -1.6 -1.0 nucleoid-associated broad specificity regulator compare
PP_1729 -1.5 -2.1 conserved protein of unknown function compare
PP_5202 -1.5 -2.2 putative cell division protein compare
PP_4364 -1.5 -5.3 putative Anti-sigma F factor antagonist compare
PP_1303 -1.5 -4.0 Sulfate adenylyltransferase subunit 2 compare
PP_4217 -1.5 -11.6 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_5652 -1.4 -1.4 conserved protein of unknown function, phage origin compare
PP_0507 -1.4 -4.6 putative ABC efflux transporter, ATP-binding protein compare
PP_1304 -1.4 -7.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4785 -1.4 -4.3 conserved exported protein of unknown function compare
PP_1020 -1.4 -2.2 putative glucose-6-phosphate 1-epimerase compare
PP_1764 -1.4 -4.5 Phosphoglycolate phosphatase 2 compare
PP_5327 -1.4 -6.1 putative phosphate ABC transporter, permease subunit compare
PP_3065 -1.4 -6.1 Pyocin R2_PP, tail formation compare
PP_3102 -1.4 -2.4 conserved protein of unknown function compare
PP_0118 -1.4 -4.1 zinc import ATP-binding protein compare
PP_4944 -1.4 -5.0 Carbamoyltransferase compare
PP_0119 -1.4 -3.1 putative zinc uptake regulation protein ZUR compare
PP_5014 -1.3 -0.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_2322 -1.3 -6.4 Major outer membrane lipoprotein compare
PP_5248 -1.3 -1.3 putative hydrolase compare
PP_2718 -1.3 -1.7 arsenic resistance transcriptional regulator compare
PP_1778 -1.3 -3.7 Lipopolysaccharide ABC export system, permease protein compare
PP_1804 -1.3 -7.0 Glycosyl transferase WbpL compare
PP_5008 -1.3 -1.7 Poly granule-associated protein compare
PP_4837 -1.3 -3.0 conserved protein of unknown function compare
PP_5320 -1.3 -5.2 two-component system DNA-binding transcriptional dual response regulator PhoB compare
PP_4726 -1.3 -1.8 Chaperone protein DnaJ compare
PP_1898 -1.3 -1.4 MotA/TolQ/ExbB proton channel family protein compare
PP_1045 -1.3 -2.1 Type II secretion pathway protein XcpP compare
PP_1780 -1.3 -10.3 putative mannosyltransferase compare
PP_1009 -1.3 -3.5 glyceraldehyde-3-phosphate dehydrogenase compare
PP_3522 -1.3 -2.4 conserved protein of unknown function compare
PP_1776 -1.2 -9.7 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_0434 -1.2 -7.9 Anhydro-N-acetylmuramic acid kinase compare
PP_2029 -1.2 -2.0 von Willebrand factor type A domain protein compare
PP_2379 -1.2 -3.3 putative cytochrome oxidase biogenesis protein compare
PP_5571 -1.2 -1.7 conserved protein of unknown function compare
PP_0406 -1.2 -5.1 Nucleotidyltransferase family protein compare
PP_5176 -1.2 -2.0 conserved protein of unknown function compare
PP_3787 -1.2 -4.1 conserved protein of unknown function compare
PP_1799 -1.2 -8.4 GDP-mannose 4,6-dehydratase compare
PP_2903 -1.2 -1.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1802 -1.2 -8.7 glycosyl transferase compare
PP_1662 -1.2 -3.6 conserved protein of unknown function compare
PP_1644 -1.2 -4.2 NAD(P)H dehydrogenase (quinone) compare
PP_3505 -1.2 -1.8 conserved protein of unknown function compare
PP_3052 -1.2 -1.5 conserved protein of unknown function compare
PP_1739 -1.2 -2.7 conserved membrane protein of unknown function compare
PP_4997 -1.2 -1.8 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_5604 -1.2 -3.1 putative subtilisin-like serine protease compare
PP_t10 -1.1 -1.5 tRNA-Pro compare
PP_1493 -1.1 -2.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0505 -1.1 -2.8 conserved protein of unknown function compare
PP_3788 -1.1 -4.3 putative Non-ribosomal peptide synthetase compare
PP_0346 -1.1 -5.4 putative Heptose kinase WapQ compare
PP_2145 -1.1 -5.6 beta-N-acetylglucosaminidase compare
PP_0405 -1.1 -8.1 conserved protein of unknown function compare
PP_4060 -1.1 -6.8 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1805 -1.1 -9.2 Polysaccharide biosynthesis protein compare
PP_5658 -1.1 -1.3 protein of unknown function compare
PP_1801 -1.1 -6.9 Glycosyl transferase WbpY compare
PP_4870 -1.1 -1.8 Azurin compare
PP_1800 -1.1 -5.8 Oxidoreductase Rmd compare
PP_2698 -1.1 -2.8 5-methyltetrahydropteroyltriglutamate- homocysteine methyltransferase compare
PP_4045 -1.1 -1.8 conserved protein of unknown function compare
PP_2153 -1.1 -1.8 conserved protein of unknown function compare
PP_0893 -1.1 -2.8 ThiJ/PfpI family protein compare
PP_1513 -1.1 -2.2 Ribosomal RNA small subunit methyltransferase J compare
PP_4961 -1.1 -1.1 putative Lipoprotein compare
PP_5200 -1.0 -5.5 proline aminopeptidase P II compare
PP_0366 -1.0 -3.1 dethiobiotin synthetase compare
PP_3064 -1.0 -2.1 Phage tail protein compare
PP_5051 -1.0 -2.1 conserved protein of unknown function compare
PP_2414 -1.0 -0.9 conserved exported protein of unknown function compare
PP_2581 -1.0 -1.5 conserved protein of unknown function compare
PP_0666 -1.0 -2.1 conserved protein of unknown function compare
PP_2575 -1.0 -1.8 conserved exported protein of unknown function compare
PP_1054 -1.0 -1.0 Type II secretion pathway protein XcpZ compare
PP_3938 -1.0 -1.6 conserved protein of unknown function compare
PP_5514 -1.0 -3.6 conserved protein of unknown function compare
PP_2442 -1.0 -1.0 conserved protein of unknown function, DUF480 family compare
PP_3048 -1.0 -1.6 conserved protein of unknown function compare
PP_5321 -1.0 -3.0 two-component system sensory histidine kinase compare
PP_1803 -1.0 -6.3 UDP-sugar epimerase compare
PP_4593 -1.0 -0.9 conserved protein of unknown function compare
PP_3824 -1.0 -2.6 conserved exported protein of unknown function compare
PP_1224 -1.0 -3.6 periplasmic subunit of the TolQRA transport system compare
PP_2699 -1.0 -4.2 conserved protein of unknown function compare
PP_1269 -1.0 -1.4 Universal stress protein family compare
PP_5619 -1.0 -2.4 protein of unknown function compare
PP_5007 -1.0 -1.9 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5423 -1.0 -1.9 conserved membrane protein of unknown function compare
PP_5317 -1.0 -1.9 Probable chorismate pyruvate-lyase compare
PP_4387 -1.0 -2.6 conserved exported protein of unknown function compare
PP_0246 -1.0 -1.1 two-component system DNA-binding response transcriptional dual regulator compare
PP_1716 -0.9 -1.7 Transcriptional regulator, Cro/CI family compare
PP_3315 -0.9 -2.3 conserved membrane protein of unknown function compare
PP_5035 -0.9 -3.5 Histidine utilization repressor compare
PP_4695 -0.9 -5.1 Sensory box histidine kinase compare
PP_4482 -0.9 -2.6 Transcriptional regulator, AraC family compare
PP_1237 -0.9 -1.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_3637 -0.9 -1.2 putative Sulfonate ABC transporter, ATP-binding protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source (-)-alpha-bisabolol in Pseudomonas putida KT2440

For carbon source (-)-alpha-bisabolol across organisms