Experiment set11IT073 for Pseudomonas putida KT2440

Compare to:

carbon source D-Glucose 55.5 mM

200 most important genes:

  gene name fitness t score description  
PP_1110 -6.3 -3.7 serine acetyltransferase compare
PP_4890 -5.9 -4.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_2388 -5.8 -3.7 Transporter, LysE family compare
PP_3511 -5.7 -3.9 Branched-chain-amino-acid aminotransferase compare
PP_0787 -5.6 -3.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0420 -5.6 -5.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0290 -5.5 -3.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4922 -5.4 -8.3 Phosphomethylpyrimidine synthase compare
PP_1988 -5.4 -3.7 3-isopropylmalate dehydrogenase compare
PP_5348 -5.4 -9.6 Transcriptional regulator, LysR family compare
PP_0422 -5.4 -3.7 Indole-3-glycerol phosphate synthase compare
PP_4678 -5.3 -8.1 Ketol-acid reductoisomerase compare
PP_3790 -5.3 -7.3 diaminopimelate epimerase compare
PP_2001 -5.3 -5.1 O-succinylhomoserine sulfhydrylase compare
PP_1985 -5.3 -3.6 3-isopropylmalate dehydratase large subunit compare
PP_5097 -5.2 -6.2 homoserine O-acetyltransferase compare
PP_5098 -5.2 -5.0 methionine biosynthesis protein MetW compare
PP_4680 -5.0 -8.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5347 -5.0 -3.5 pyruvate carboxylase subunit A compare
PP_0293 -5.0 -2.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1109 -4.9 -12.1 Transcriptional regulator, GntR family compare
PP_0966 -4.8 -3.3 Histidinol dehydrogenase compare
PP_0967 -4.8 -6.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1111 -4.8 -5.7 putative Synthetase compare
PP_2168 -4.7 -3.3 Transaldolase compare
PP_5303 -4.6 -3.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5346 -4.4 -8.5 pyruvate carboxylase subunit B compare
PP_0417 -4.4 -14.2 Anthranilate synthase component 1 compare
PP_5104 -4.4 -6.7 thiazole synthase compare
PP_1348 -4.2 -6.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3244 -4.1 -2.5 Magnesium transporter, MgtC family compare
PP_0965 -4.0 -8.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1088 -4.0 -5.5 Argininosuccinate synthase compare
PP_1063 -4.0 -8.9 DNA-binding transcriptional regulator, homocysteine-binding compare
PP_1231 -4.0 -2.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1995 -4.0 -3.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2348 -4.0 -5.3 Sensor histidine kinase compare
PP_5075 -4.0 -7.6 glutamate synthase (NADPH) beta subunit compare
PP_2645 -3.9 -10.2 magnesium transporter, ATP-dependent compare
PP_5090 -3.8 -1.7 putative cell division protein compare
PP_4679 -3.8 -3.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0421 -3.7 -8.6 Anthranilate phosphoribosyltransferase compare
PP_5289 -3.7 -3.6 Acetylglutamate kinase compare
PP_2371 -3.7 -3.6 Sulphite reductase hemoprotein, beta subunit compare
PP_t10 -3.7 -1.4 tRNA-Pro compare
PP_1233 -3.6 -2.5 sulfurtransferase compare
PP_5155 -3.6 -4.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4917 -3.6 -3.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1986 -3.6 -2.0 3-isopropylmalate dehydratase small subunit compare
PP_2390 -3.6 -6.7 Transcriptional regulator, LysR family compare
PP_2720 -3.6 -0.9 conserved protein of unknown function compare
PP_0261 -3.5 -5.3 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1079 -3.5 -2.4 Ornithine carbamoyltransferase compare
PP_0117 -3.5 -6.2 Zn(2+) ABC transporter - permease subunit compare
PP_5185 -3.5 -3.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0319 -3.5 -1.3 conserved protein of unknown function compare
PP_0735 -3.5 -1.3 molybdopterin-synthase adenylyltransferase compare
PP_5076 -3.5 -15.8 L-glutamate synthase(NADPH) alpha subunit compare
PP_0362 -3.4 -9.9 Biotin synthase compare
PP_2327 -3.4 -2.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5017 -3.4 -0.9 Sec-independent protein translocase protein TatB compare
PP_0292 -3.3 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2370 -3.3 -3.0 conserved protein of unknown function compare
PP_5128 -3.3 -6.9 Dihydroxy-acid dehydratase compare
PP_4684 -3.2 -2.2 conserved protein of unknown function with kinase-like domain compare
PP_3376 -3.2 -5.8 putative phosphonate dehydrogenase compare
PP_1922 -3.2 -4.2 conserved protein of unknown function compare
PP_3447 -3.2 -0.8 conserved membrane protein of unknown function compare
PP_3924 -3.1 -3.0 conserved protein of unknown function compare
PP_1025 -3.1 -9.9 2-isopropylmalate synthase compare
PP_0120 -3.1 -4.0 putative zinc ABC transporter compare
PP_4782 -3.0 -2.1 Phosphomethylpyrimidine kinase compare
PP_0289 -3.0 -5.5 Imidazoleglycerol-phosphate dehydratase compare
PP_1426 -3.0 -10.2 L-aspartate oxidase compare
PP_2550 -2.9 -2.4 putative transcriptional regulatory protein compare
PP_4937 -2.9 -3.9 toluene tolerance protein compare
PP_0082 -2.9 -2.8 tryptophan synthase alpha chain compare
PP_4909 -2.9 -2.8 phosphoserine phosphatase compare
PP_3999 -2.9 -2.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0291 -2.8 -3.2 conserved protein of unknown function compare
PP_4961 -2.7 -0.9 putative Lipoprotein compare
PP_5015 -2.7 -2.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4213 -2.7 -2.6 putative dipeptidase compare
PP_2379 -2.7 -6.0 putative cytochrome oxidase biogenesis protein compare
PP_3245 -2.6 -0.9 conserved protein of unknown function compare
PP_2714 -2.6 -3.2 Sensor histidine kinase compare
PP_2433 -2.6 -3.2 conserved protein of unknown function compare
PP_2748 -2.6 -2.6 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_0118 -2.6 -5.8 zinc import ATP-binding protein compare
PP_1142 -2.6 -0.7 conserved protein of unknown function compare
PP_1303 -2.5 -5.5 Sulfate adenylyltransferase subunit 2 compare
PP_4271 -2.4 -0.6 conserved protein of unknown function compare
PP_5000 -2.4 -0.8 peptidase component of the ATP-dependent HslVU protease compare
PP_2073 -2.4 -3.4 Acetyltransferase, GNAT family compare
PP_2328 -2.4 -1.6 Phosphoadenosine phosphosulfate reductase compare
PP_0232 -2.4 -1.0 ATP-binding taurine transporter subunit compare
PP_5705 -2.3 -1.3 protein of unknown function compare
PP_4268 -2.3 -0.8 nucleoid-associated broad specificity regulator compare
PP_1898 -2.3 -1.4 MotA/TolQ/ExbB proton channel family protein compare
PP_2718 -2.3 -2.1 arsenic resistance transcriptional regulator compare
PP_5701 -2.2 -2.2 conserved protein of unknown function compare
PP_0274 -2.2 -1.5 putative transcriptional regulator containing HTH domain compare
PP_5628 -2.1 -2.8 conserved protein of unknown function compare
PP_0119 -2.1 -3.1 putative zinc uptake regulation protein ZUR compare
PP_5007 -2.1 -2.2 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4723 -2.1 -2.5 Carbamoyl-phosphate synthase large chain compare
PP_5248 -2.1 -1.1 putative hydrolase compare
PP_4581 -2.1 -2.1 putative amidotransferase compare
PP_5548 -2.1 -2.8 protein of unknown function compare
PP_3307 -2.0 -0.7 conserved protein of unknown function compare
PP_5456 -2.0 -1.4 conserved protein of unknown function compare
PP_2646 -2.0 -2.2 conserved protein of unknown function compare
PP_5453 -2.0 -1.1 conserved protein of unknown function compare
PP_1009 -2.0 -3.7 glyceraldehyde-3-phosphate dehydrogenase compare
PP_5093 -1.9 -0.9 twitching motility protein compare
PP_0184 -1.9 -1.3 Argininosuccinate lyase compare
PP_0874 -1.9 -1.6 conserved protein of unknown function compare
PP_2441 -1.9 -1.6 conserved protein of unknown function compare
PP_0306 -1.9 -2.2 conserved protein of unknown function compare
PP_1508 -1.9 -3.0 conserved protein of unknown function compare
PP_0003 -1.8 -1.3 16S RNA methyltransferase compare
PP_3417 -1.8 -4.5 D-gluconate transporter compare
PP_3766 -1.8 -2.7 Lactoylglutathione lyase compare
PP_1326 -1.8 -1.1 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_5652 -1.8 -1.3 conserved protein of unknown function, phage origin compare
PP_5027 -1.8 -1.5 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_2846 -1.8 -2.1 urease accessory protein compare
PP_3035 -1.7 -0.9 conserved protein of unknown function compare
PP_5475 -1.7 -1.1 conserved protein of unknown function compare
PP_1304 -1.7 -4.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0627 -1.7 -2.4 conserved protein of unknown function compare
PP_4994 -1.7 -3.4 conserved protein of unknown function compare
PP_5331 -1.7 -2.0 Long-chain acyl-CoA thioester hydrolase compare
PP_1062 -1.7 -1.1 MutT/nudix family protein compare
PP_2699 -1.7 -4.9 conserved protein of unknown function compare
PP_1554 -1.7 -2.9 conserved protein of unknown function compare
PP_0122 -1.6 -1.6 conserved exported protein of unknown function compare
PP_3892 -1.6 -0.8 conserved protein of unknown function compare
PP_0508 -1.6 -1.7 conserved exported protein of unknown function compare
PP_5014 -1.6 -1.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_0379 -1.6 -3.3 Coenzyme PQQ synthesis protein B compare
PP_3034 -1.6 -1.4 putative Regulator protein compare
PP_2611 -1.6 -2.9 membrane protein of unknown function compare
PP_1845 -1.6 -2.3 Enoyl-CoA hydratase/isomerase family protein compare
PP_3776 -1.5 -3.8 putative permease (RarD protein) compare
PP_2016 -1.5 -2.7 conserved protein of unknown function compare
PP_3243 -1.5 -2.5 Acetyltransferase, GNAT family compare
PP_1190 -1.5 -2.3 conserved protein of unknown function compare
PP_1609 -1.5 -1.1 conserved protein of unknown function compare
PP_2220 -1.5 -3.6 C4-type zinc finger protein, DksA/TraR family compare
PP_1293 -1.5 -1.3 molybdopterin synthase small subunit compare
PP_3824 -1.5 -1.7 conserved exported protein of unknown function compare
PP_0377 -1.5 -1.4 coenzyme PQQ synthesis protein D compare
PP_0022 -1.5 -0.8 hypothetical protein compare
PP_5176 -1.5 -2.0 conserved protein of unknown function compare
PP_1011 -1.5 -4.2 glucokinase compare
PP_0834 -1.4 -1.0 Sec translocation complex subunit YajC compare
PP_3265 -1.4 -3.1 putative phosphohydrolase of unknown function compare
PP_0401 -1.4 -1.0 Ribosomal RNA small subunit methyltransferase A compare
PP_3197 -1.4 -2.5 Glyoxalase family protein compare
PP_0809 -1.4 -5.1 disulfide bond formation protein B compare
PP_3788 -1.4 -4.7 putative Non-ribosomal peptide synthetase compare
PP_3649 -1.4 -2.7 Transcriptional regulator, GntR family compare
PP_5035 -1.4 -4.6 Histidine utilization repressor compare
PP_4066 -1.4 -3.4 methylglutaconyl-CoA hydratase compare
PP_1328 -1.4 -1.6 Protein MraZ compare
PP_4379 -1.4 -3.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2496 -1.4 -2.1 conserved protein of unknown function compare
PP_4707 -1.4 -1.4 OsmY-related protein compare
PP_3014 -1.4 -2.4 conserved exported protein of unknown function compare
PP_4980 -1.4 -3.5 ATP-dependent RNA helicase compare
PP_0585 -1.3 -1.5 putative metal-sensitive transcriptional regulator, MerR family compare
PP_1617 -1.3 -2.9 S-formylglutathione hydrolase / S-lactoylglutathione hydrolase compare
PP_1268 -1.3 -1.5 putative HtrA suppressor protein sohA compare
PP_4329 -1.3 -1.7 FlhB domain protein compare
PP_5547 -1.3 -3.3 protein of unknown function compare
PP_5604 -1.3 -2.6 putative subtilisin-like serine protease compare
PP_3060 -1.3 -3.5 putative tail sheath protein compare
PP_1589 -1.3 -4.7 uridylyltransferase compare
PP_3837 -1.3 -2.1 inner membrane protein of unknown function compare
PP_0757 -1.3 -2.2 conserved protein of unknown function compare
PP_1380 -1.3 -2.5 3-oxoadipate enol-lactonase 2 compare
PP_5083 -1.3 -2.2 putative Type IV pili biogenesis protein PilM compare
PP_5327 -1.3 -3.7 putative phosphate ABC transporter, permease subunit compare
PP_2307 -1.3 -2.0 conserved protein of unknown function compare
PP_0989 -1.3 -1.8 glycine cleavage system H protein 1 compare
PP_0913 -1.3 -3.1 conserved exported protein of unknown function compare
PP_3443 -1.2 -3.3 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_0127 -1.2 -2.4 Thiol:disulfide interchange protein compare
PP_5328 -1.2 -2.8 putative phosphate transport system permease protein compare
PP_5644 -1.2 -1.2 conserved membrane protein of unknown function compare
PP_3380 -1.2 -1.6 2-ketogluconate utilization repressor compare
PP_0841 -1.2 -3.8 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_1681 -1.2 -4.9 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4098 -1.2 -0.6 UvrABC system protein C compare
PP_1479 -1.2 -2.8 HicB protein compare
PP_5321 -1.2 -2.7 two-component system sensory histidine kinase compare
PP_3787 -1.2 -3.5 conserved protein of unknown function compare
PP_5393 -1.2 -0.7 putative metal-binding chaperone compare
PP_5533 -1.2 -0.9 conserved protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Glucose in Pseudomonas putida KT2440

For carbon source D-Glucose across organisms