Experiment set11IT072 for Agrobacterium fabrum C58

Compare to:

LB with methyl jasmonate 5 mM

200 most important genes:

  gene name fitness t score description  
Atu3202 -5.6 -19.7 RND multidrug efflux transporter compare
Atu4217 -5.3 -3.6 TetR family transcriptional regulator compare
Atu3203 -5.2 -10.0 RND multidrug efflux membrane permease compare
Atu2551 -4.9 -20.8 RND multidrug efflux transporter compare
Atu2550 -4.8 -18.6 RND multidrug efflux membrane permease compare
Atu0141 -4.2 -2.9 cytochrome O ubiquinol oxidase subunit I compare
Atu4072 -4.2 -3.3 nodulation protein N compare
Atu0769 -4.1 -2.8 protoheme IX farnesyltransferase compare
Atu0051 -4.0 -8.5 two component sensor kinase compare
Atu3469 -3.7 -4.4 phosphoglyceromutase compare
Atu3798 -3.6 -8.7 TetR family transcriptional regulator compare
Atu3763 -3.5 -2.4 hypothetical protein compare
Atu1621 -3.3 -10.2 hypothetical protein compare
Atu0142 -3.2 -6.0 cytochrome o ubiquinol oxidase subunit II compare
Atu3598 -3.2 -3.2 thiol:disulfide interchange protein compare
Atu0050 -3.1 -7.0 two component response regulator compare
Atu0533 -3.1 -7.0 putative inhibitor of septum formation compare
Atu2592 -2.9 -8.4 hypothetical protein compare
Atu1327 -2.9 -5.8 NADH-ubiquinone oxidoreductase compare
Atu2590 -2.9 -13.6 hypothetical protein compare
Atu0925 -2.8 -5.2 hypothetical protein compare
Atu1647 -2.8 -8.2 ABC transporter, membrane spanning protein compare
Atu2583 -2.7 -14.8 glycosyltransferase compare
Atu2577 -2.7 -18.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu2207 -2.6 -5.5 two component sensor kinase compare
Atu0931 -2.6 -12.3 penicillin binding protein compare
Atu4149 -2.6 -13.1 UDP-glucose 6-dehydrogenase compare
Atu2439 -2.5 -2.5 hypothetical protein compare
Atu1644 -2.5 -5.4 hypothetical protein compare
Atu4148 -2.5 -7.7 UDP-glucuronic acid epimerase compare
Atu0977 -2.4 -5.4 serine protease DO-like protease compare
Atu0257 -2.4 -10.8 hypothetical protein compare
Atu2591 -2.3 -7.1 glucosyltransferase compare
Atu0912 -2.3 -2.0 Na+/H+ antiporter compare
Atu1842 -2.3 -11.8 hypothetical protein compare
Atu1646 -2.3 -6.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu1175 -2.3 -2.9 hypothetical protein compare
Atu1645 -2.3 -9.3 ABC transporter, substrate binding protein compare
Atu0926 -2.3 -8.1 hypothetical protein compare
Atu0687 -2.3 -3.2 hypothetical protein compare
Atu1373 -2.2 -11.1 hypothetical protein compare
Atu1056 -2.2 -6.8 hypothetical protein compare
Atu2582 -2.2 -9.9 UDP-glucose/GDP-mannose dehydrogenase compare
Atu8167 -2.2 -12.3 putative transmembrane protein compare
Atu2584 -2.2 -6.0 hypothetical protein compare
Atu0030 -2.1 -2.8 phosphocarrier protein HPr compare
Atu1810 -2.1 -1.0 hypothetical protein compare
Atu2585 -2.1 -6.5 hypothetical protein compare
Atu3780 -2.0 -6.9 hypothetical protein compare
Atu0479 -2.0 -9.7 ABC transporter, substrate binding protein (amino acid) compare
Atu1774 -2.0 -8.4 ABC transporter, substrate binding protein (peptide) compare
Atu3886 -2.0 -8.9 lysophospholipase compare
Atu0388 -1.9 -13.9 two component sensor kinase compare
Atu1163 -1.9 -2.6 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0184 -1.9 -3.6 glucokinase compare
Atu3727 -1.9 -4.2 hypothetical protein compare
Atu0189 -1.8 -4.6 ABC transporter, membrane spanning protein (peptide) compare
Atu0190 -1.8 -8.6 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1484 -1.8 -3.1 transcriptional regulator compare
Atu0971 -1.8 -4.9 two component sensor kinase compare
Atu0188 -1.7 -3.9 ABC transporter, membrane spanning protein (peptide) compare
Atu0784 -1.7 -4.0 hypothetical protein compare
Atu2052 -1.7 -7.9 hypothetical protein compare
Atu0780 -1.7 -10.2 hypothetical protein compare
Atu1739 -1.7 -5.7 permease compare
Atu0788 -1.6 -6.1 hypothetical protein compare
Atu3779 -1.6 -8.2 lytic murein transglycosylase compare
Atu3519 -1.6 -6.8 peptidyl-prolyl cis-trans isomerase compare
Atu8138 -1.5 -1.9 hypothetical protein compare
Atu0036 -1.5 -2.6 hypothetical protein compare
Atu0486 -1.5 -5.2 dihydroorotate dehydrogenase compare
Atu8162 -1.5 -2.0 hypothetical protein compare
Atu3730 -1.4 -1.7 hypothetical protein compare
Atu4882 -1.4 -3.0 hypothetical protein compare
Atu1308 -1.4 -4.8 aspartate carbamoyl transferase catalytic subunit compare
Atu1076 -1.4 -2.9 colicin V production protein compare
Atu1333 -1.4 -4.0 outer membrane protein compare
Atu1359 -1.4 -1.5 dnaK deletion suppressor protein compare
Atu2728 -1.4 -4.9 beta (1-->2) glucan export ATP-binding protein compare
Atu1439 -1.3 -2.9 hypothetical protein compare
Atu0768 -1.3 -9.9 cytochrome-c oxidase chain I compare
Atu1131 -1.3 -8.2 outer membrane protein compare
Atu3012 -1.3 -1.2 hypothetical protein compare
Atu2433 -1.3 -1.7 hypothetical protein compare
Atu3342 -1.2 -5.0 trehalose utilization-like protein compare
Atu0138 -1.2 -6.3 surfeit 1 compare
Atu1499 -1.2 -7.2 penicillin binding protein compare
Atu1021 -1.2 -2.9 outer membrane protein compare
Atu1028 -1.2 -2.9 hypothetical protein compare
Atu2043 -1.2 -5.4 htrA family protein compare
Atu3005 -1.2 -1.3 hypothetical protein compare
Atu3008 -1.2 -1.1 hypothetical protein compare
Atu3343 -1.1 -6.6 trehalose utilization-like protein compare
Atu1838 -1.1 -4.7 ABC transporter, substrate binding protein (amino acid) compare
Atu1099 -1.1 -4.3 hypothetical protein compare
Atu2710 -1.1 -5.8 hypothetical protein compare
Atu3353 -1.1 -7.1 mannose-1-phosphate guanylyltransferase compare
Atu2824 -1.1 -3.5 hypothetical protein compare
Atu0319 -1.1 -1.5 ubiquinone biosynthesis protein compare
Atu0894 -1.1 -2.4 ABC transporter, membrane spanning protein compare
Atu0331 -1.1 -2.9 sigma-54 modulation protein compare
Atu1683 -1.1 -2.3 hypothetical protein compare
Atu2073 -1.1 -4.3 membrane protein compare
Atu4616 -1.1 -1.8 dTDP-4-dehydrorhamnose reductase compare
Atu2662 -1.1 -1.5 acetyltransferase compare
Atu1307 -1.0 -4.1 dihydroorotase compare
Atu3608 -1.0 -4.1 hypothetical protein compare
Atu4050 -1.0 -3.1 UTP-glucose-1-phosphate uridylyltransferase compare
Atu3517 -1.0 -3.7 acetyltransferase compare
Atu2304 -1.0 -6.3 bacteroid development protein compare
Atu0399 -1.0 -4.9 dihydroorotase compare
Atu0153 -1.0 -3.6 transcriptional regulator, Fur family compare
Atu0361 -1.0 -2.8 transcriptional regulator compare
Atu1619 -1.0 -1.6 protein-export membrane protein SECG compare
Atu0806 -1.0 -7.1 hypothetical protein compare
Atu3429 -0.9 -1.6 hypothetical protein compare
Atu3750 -0.9 -2.5 thiamine-phosphate pyrophosphorylase compare
Atu8012 -0.9 -1.9 hypothetical protein compare
Atu2183 -0.9 -4.6 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0886 -0.9 -1.8 hypothetical protein compare
Atu0759 -0.9 -6.2 hypothetical protein compare
Atu0978 -0.9 -4.1 two component response regulator compare
Atu3013 -0.9 -3.2 hypothetical protein compare
Atu3628 -0.9 -4.3 hypothetical protein compare
Atu4077 -0.9 -6.1 glycogen branching protein compare
Atu2722 -0.9 -5.8 porin compare
Atu2692 -0.9 -2.4 intracellular septation protein compare
Atu0086 -0.8 -1.0 ribosome-binding factor A compare
Atu2117 -0.8 -3.9 lytic murein transglycosylase compare
Atu3518 -0.8 -4.7 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu0339 -0.8 -3.2 hypothetical protein compare
Atu0767 -0.8 -4.2 cytochrome c oxidase subunit II compare
Atu1615 -0.8 -5.5 hypothetical protein compare
Atu0298 -0.8 -3.7 orotidine 5 compare
Atu0115 -0.8 -1.1 hypothetical protein compare
Atu0598 -0.8 -4.2 phosphogluconate dehydratase compare
Atu2554 -0.8 -1.6 lysyl-tRNA synthetase compare
Atu4055 -0.8 -3.1 endo-1,3-1,4-beta-glycanase compare
Atu1779 -0.8 -2.0 hypothetical protein compare
Atu1793 -0.8 -5.3 phosphatidylcholine synthase compare
Atu3496 -0.8 -3.1 hypothetical protein compare
Atu3631 -0.8 -2.4 hypothetical protein compare
Atu3016 -0.7 -3.8 phosphoglyceromutase compare
Atu2017 -0.7 -1.0 hypothetical protein compare
Atu1351 -0.7 -3.7 hypothetical protein compare
Atu1500 -0.7 -2.4 rare lipoprotein A compare
Atu1227 -0.7 -4.0 hypothetical protein compare
Atu1760 -0.7 -1.2 hypothetical protein compare
Atu0124 -0.7 -2.4 hypothetical protein compare
Atu4133 -0.7 -1.1 hypothetical protein compare
Atu1573 -0.7 -1.5 hypothetical protein compare
Atu4884 -0.7 -2.7 hypothetical protein compare
Atu5125 -0.7 -3.0 GntR family transcriptional regulator compare
Atu3311 -0.7 -5.8 phosphomannose isomerase compare
Atu4541 -0.7 -2.4 carboxymuconolactone decarboxylase compare
Atu0340 -0.7 -1.3 SAM dependent methyltransferase compare
Atu0225 -0.7 -0.9 hypothetical protein compare
Atu0535 -0.7 -2.9 hypothetical protein compare
Atu2832 -0.7 -1.9 tRNA modification GTPase compare
Atu1592 -0.7 -3.3 hypothetical protein compare
Atu0923 -0.7 -3.2 hypothetical protein compare
Atu3183 -0.6 -0.8 hypothetical protein compare
Atu0503 -0.6 -5.4 enoyl-CoA hydratase compare
Atu0981 -0.6 -4.9 glutamate-ammonia-ligase adenylyltransferase compare
Atu2790 -0.6 -1.2 3-isopropylmalate dehydratase, small subunit compare
Atu0353 -0.6 -4.1 acetyltransferase compare
Atu0979 -0.6 -4.1 two component sensor kinase compare
Atu0638 -0.6 -2.1 hypothetical protein compare
Atu2204 -0.6 -1.7 hypothetical protein compare
Atu1446 -0.6 -1.6 two component response regulator compare
Atu8159 -0.6 -1.6 hypothetical protein compare
Atu3338 -0.6 -4.3 trehalose/maltose ABC transporter substrate-binding protein compare
Atu0400 -0.6 -2.5 orotate phosphoribosyltransferase compare
Atu3688 -0.6 -3.1 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu1714 -0.6 -1.2 exonuclease III compare
Atu0846 -0.6 -1.7 transcriptional regulator, MarR family compare
Atu2084 -0.6 -0.7 hypothetical protein compare
Atu3019 -0.6 -3.4 hypothetical protein compare
Atu4773 -0.6 -1.4 two component response regulator compare
Atu3341 -0.6 -3.6 trehalose/maltose ABC transporter ATPase compare
Atu4317 -0.6 -1.8 TetR family transcriptional regulator compare
Atu1737 -0.6 -2.0 hypothetical protein compare
Atu3009 -0.6 -0.8 exopolysaccharide production protein compare
Atu2125 -0.6 -0.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu8096 -0.6 -1.2 hypothetical protein compare
Atu0252 -0.6 -3.6 hypothetical protein compare
Atu1030 -0.6 -1.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1722 -0.6 -2.2 hypothetical protein compare
Atu1225 -0.6 -1.2 hypothetical protein compare
Atu0375 -0.6 -1.0 small heat shock protein compare
Atu3006 -0.6 -1.9 hypothetical protein compare
Atu0357 -0.6 -2.7 phosphate starvation inducible protein compare
Atu4887 -0.6 -1.8 hypothetical protein compare
Atu0647 -0.6 -2.6 phosphoribosylamine--glycine ligase compare
Atu1535 -0.6 -1.6 cytochrome c oxidase, FixQ chain compare
Atu1667 -0.6 -1.3 hypothetical protein compare
Atu3339 -0.6 -2.7 trehalose/maltose ABC transporter permease compare
Atu3023 -0.6 -3.9 sugar ABC transporter permease compare
Atu2633 -0.5 -1.2 RhtB family transporter compare
Atu3718 -0.5 -2.0 hypothetical protein compare


Specific Phenotypes

For 25 genes in this experiment

For stress methyl jasmonate in Agrobacterium fabrum C58

For stress methyl jasmonate across organisms