Experiment set11IT072 for Agrobacterium fabrum C58

LB with methyl jasmonate 5 mM

Group: stress
Media: LB + methyl jasmonate (5 mM), pH=7
Culturing: Agro_ML11, 24-well plate, Aerobic, at 28 (C), shaken=200 rpm
By: Mitchell Thompson on 1/7/22
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 25 genes in this experiment

For stress methyl jasmonate in Agrobacterium fabrum C58

For stress methyl jasmonate across organisms

SEED Subsystems

Subsystem	#Specific
Multidrug Resistance Efflux Pumps	4
Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)	4
Peptidoglycan Biosynthesis	3
Biogenesis of cytochrome c oxidases	1
Peptidyl-prolyl cis-trans isomerase	1
Synechocystis experimental	1
Triacylglycerol metabolism	1
Type IV pilus	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Peptidoglycan biosynthesis
• Lipopolysaccharide biosynthesis
• Fructose and mannose metabolism
• Ascorbate and aldarate metabolism
• Ubiquinone and menaquinone biosynthesis
• Lysine degradation
• N-Glycan biosynthesis
• O-Glycan biosynthesis
• High-mannose type N-glycan biosynthesis
• O-Mannosyl glycan biosynthesis
• Nucleotide sugars metabolism
• Glycosaminoglycan degradation
• Keratan sulfate biosynthesis
• Glycerolipid metabolism
• Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
• Glycerophospholipid metabolism
• Sphingolipid metabolism
• Glycosphingolipid biosynthesis - lacto and neolacto series
• Glycosphingolipid biosynthesis - globo series
• Glycosphingolipid biosynthesis - ganglio series
• Biotin metabolism
• Carotenoid biosynthesis - General
• Zeatin biosynthesis
• Flavonoid biosynthesis
• Anthocyanin biosynthesis
• Flavone and flavonol biosynthesis

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
phospholipid remodeling (phosphatidylethanolamine, yeast)	4	2	1
peptidoglycan maturation (meso-diaminopimelate containing)	12	3	3
peptidoglycan biosynthesis IV (Enterococcus faecium)	17	12	3
peptidoglycan biosynthesis II (staphylococci)	17	12	3
peptidoglycan biosynthesis V (β-lactam resistance)	17	11	2
peptidoglycan biosynthesis I (meso-diaminopimelate containing)	12	11	1
peptidoglycan biosynthesis III (mycobacteria)	15	11	1