Experiment set11IT070 for Agrobacterium fabrum C58

Compare to:

LB with pinene 5 mM

200 most important genes:

  gene name fitness t score description  
Atu3730 -3.6 -3.1 hypothetical protein compare
Atu0422 -2.6 -3.5 ABC transporter, membrane spanning protein compare
Atu2125 -2.4 -2.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu0141 -1.8 -2.1 cytochrome O ubiquinol oxidase subunit I compare
Atu3712 -1.7 -2.0 hypothetical protein compare
Atu0040 -1.5 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3469 -1.3 -3.4 phosphoglyceromutase compare
Atu0912 -1.3 -2.2 Na+/H+ antiporter compare
Atu3012 -1.3 -1.6 hypothetical protein compare
Atu2793 -1.3 -5.5 cobyrinic acid a,c-diamide synthase compare
Atu0184 -1.2 -2.7 glucokinase compare
Atu0142 -1.2 -3.5 cytochrome o ubiquinol oxidase subunit II compare
Atu4317 -1.1 -3.3 TetR family transcriptional regulator compare
Atu0421 -1.1 -1.8 ABC transporter, membrane spanning protein compare
Atu1225 -1.1 -2.0 hypothetical protein compare
Atu0039 -1.1 -2.0 imidazoleglycerol-phosphate synthase cyclase compare
Atu3598 -1.1 -2.6 thiol:disulfide interchange protein compare
Atu3183 -1.0 -1.1 hypothetical protein compare
Atu1110 -1.0 -3.2 cytosol aminopeptidase compare
Atu6098 -1.0 -1.1 transcriptional regulator, HTH family compare
Atu8202 -1.0 -3.8 hypothetical protein compare
Atu0784 -0.9 -1.9 hypothetical protein compare
Atu0434 -0.9 -2.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1364 -0.9 -4.3 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2057 -0.9 -1.9 DNA helicase II compare
Atu2800 -0.8 -2.3 precorrin-3B C17-methyltransferase compare
Atu2163 -0.8 -1.3 hypothetical protein compare
Atu2805 -0.8 -4.1 cobalamin synthesis protein compare
Atu2831 -0.8 -3.4 glucose inhibited division protein A compare
Atu0400 -0.8 -3.4 orotate phosphoribosyltransferase compare
Atu1019 -0.8 -2.4 hypothetical protein compare
Atu0601 -0.8 -5.1 oxidoreductase compare
Atu0051 -0.8 -3.6 two component sensor kinase compare
Atu0043 -0.8 -1.6 imidazoleglycerol-phosphate dehydratase compare
Atu0886 -0.8 -1.1 hypothetical protein compare
Atu0477 -0.8 -1.2 hypothetical protein compare
Atu4072 -0.8 -1.1 nodulation protein N compare
Atu4880 -0.8 -5.4 AraC family transcriptional regulator compare
Atu2807 -0.8 -4.6 cob(I)alamin adenosyltransferase compare
Atu4217 -0.8 -1.6 TetR family transcriptional regulator compare
Atu0999 -0.7 -4.0 magnesium transport protein compare
Atu1810 -0.7 -1.2 hypothetical protein compare
Atu2799 -0.7 -3.3 precorrin-6x reductase compare
Atu2207 -0.7 -2.2 two component sensor kinase compare
Atu4773 -0.7 -1.7 two component response regulator compare
Atu2832 -0.7 -3.0 tRNA modification GTPase compare
Atu5513 -0.7 -1.8 cold shock protein compare
Atu1677 -0.7 -3.0 queuine tRNA-ribosyltransferase compare
Atu1904 -0.7 -2.0 transcriptional regulator compare
Atu2809 -0.7 -4.2 cobalamin biosynthesis protein compare
Atu2192 -0.7 -1.3 hypothetical protein compare
Atu0647 -0.7 -3.3 phosphoribosylamine--glycine ligase compare
Atu2293 -0.7 -1.5 hypothetical protein compare
Atu0298 -0.7 -3.9 orotidine 5 compare
Atu0029 -0.7 -3.2 S-adenosylhomocysteine hydrolase compare
Atu0777 -0.7 -0.9 hypothetical protein compare
Atu3739 -0.7 -2.0 phosphoglycerate kinase compare
Atu2692 -0.7 -2.4 intracellular septation protein compare
Atu1542 -0.7 -3.5 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu4878 -0.7 -2.3 hypothetical protein compare
Atu0658 -0.7 -4.3 phosphate permease compare
Atu1052 -0.7 -2.3 hypothetical protein compare
Atu2804 -0.7 -4.3 cobaltochelatase subunit compare
Atu1163 -0.7 -1.7 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2795 -0.7 -3.3 cobalamin biosynthetic protein compare
Atu2729 -0.7 -1.5 hypothetical protein compare
Atu4884 -0.6 -1.7 hypothetical protein compare
Atu0638 -0.6 -1.9 hypothetical protein compare
Atu2239 -0.6 -1.3 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0368 -0.6 -3.0 tRNA pseudouridine synthase I compare
Atu2802 -0.6 -3.0 precorrin-8X methylmutase compare
Atu3023 -0.6 -4.6 sugar ABC transporter permease compare
Atu4879 -0.6 -3.5 hypothetical protein compare
Atu1204 -0.6 -4.1 potassium uptake protein compare
Atu0399 -0.6 -2.6 dihydroorotase compare
Atu0050 -0.6 -2.6 two component response regulator compare
Atu0659 -0.6 -2.9 NTP pyrophosphohydrolase, MutT family compare
Atu4881 -0.6 -3.2 hypothetical protein compare
Atu4882 -0.6 -1.6 hypothetical protein compare
Atu3120 -0.6 -0.9 hypothetical protein compare
Atu2633 -0.6 -1.3 RhtB family transporter compare
Atu2808 -0.6 -3.3 cobyric acid synthase compare
Atu2803 -0.6 -2.4 Cobalamin biosynthesis associated protein compare
Atu3510 -0.6 -1.9 amidohydrolase compare
Atu2245 -0.6 -4.0 Na+/Pi-cotransporter compare
Atu3015 -0.6 -2.4 hypothetical protein compare
Atu0602 -0.6 -3.9 glutamine synthetase compare
Atu3473 -0.5 -3.8 2-oxoisovalerate dehydrogenase subunit alpha compare
Atu3022 -0.5 -3.3 sugar ABC transporter permease compare
Atu4889 -0.5 -2.9 hypothetical protein compare
Atu2083 -0.5 -2.3 DNA repair protein RecN compare
Atu4144 -0.5 -0.8 hypothetical protein compare
Atu0971 -0.5 -1.9 two component sensor kinase compare
Atu0941 -0.5 -0.7 hypothetical protein compare
Atu0966 -0.5 -1.4 hypothetical protein compare
Atu0486 -0.5 -2.0 dihydroorotate dehydrogenase compare
Atu3020 -0.5 -2.9 GntR family transcriptional regulator compare
Atu3019 -0.5 -3.4 hypothetical protein compare
Atu3505 -0.5 -2.8 3-hydroxyisobutyryl-CoA hydrolase compare
Atu2801 -0.5 -2.3 precorrin-2 C20 methyltransferase compare
Atu3999 -0.5 -1.5 dithiobiotin synthetase compare
Atu0339 -0.5 -2.4 hypothetical protein compare
Atu4077 -0.5 -3.4 glycogen branching protein compare
Atu3593 -0.5 -2.6 hypothetical protein compare
Atu3471 -0.5 -3.6 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
Atu2640 -0.5 -2.0 hypothetical protein compare
Atu4890 -0.5 -1.1 IS426 transposase compare
Atu3014 -0.5 -1.2 hypothetical protein compare
Atu3024 -0.5 -3.7 sugar ABC transporter permease compare
Atu0977 -0.5 -1.8 serine protease DO-like protease compare
Atu3485 -0.5 -3.0 short chain dehydrogenase compare
Atu0115 -0.5 -0.7 hypothetical protein compare
Atu3963 -0.5 -3.1 GntR family transcriptional regulator compare
Atu1446 -0.5 -0.9 two component response regulator compare
Atu0427 -0.5 -2.2 hypothetical protein compare
Atu0580 -0.5 -1.9 flagellar biosynthetic protein compare
Atu0185 -0.5 -2.8 methylglyoxal synthase compare
Atu4875 -0.5 -2.2 hypothetical protein compare
Atu3719 -0.5 -2.3 MutT/nudix family protein compare
Atu1039 -0.5 -2.1 DNA repair protein RecO compare
Atu3910 -0.5 -1.6 LamB/YcsF family protein compare
Atu1308 -0.5 -1.8 aspartate carbamoyl transferase catalytic subunit compare
Atu0331 -0.5 -1.1 sigma-54 modulation protein compare
Atu1779 -0.5 -1.4 hypothetical protein compare
Atu2555 -0.5 -2.2 L-lysine 2,3-aminomutase compare
Atu0225 -0.5 -0.7 hypothetical protein compare
Atu1030 -0.5 -0.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1513 -0.5 -2.6 ABC excinuclease subunit A compare
Atu1339 -0.5 -1.4 ribonuclease E compare
Atu4876 -0.5 -3.3 oxidoreductase compare
Atu3270 -0.4 -1.6 hypothetical protein compare
Atu3472 -0.4 -1.8 2-oxoisovalerate dehydrogenase subunit beta compare
Atu0528 -0.4 -1.4 large conductance mechanosensitive channel protein compare
Atu2620 -0.4 -0.9 hypothetical protein compare
Atu0038 -0.4 -1.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0030 -0.4 -1.0 phosphocarrier protein HPr compare
Atu4418 -0.4 -2.2 glutaryl-CoA dehydrogenase compare
Atu6114 -0.4 -1.6 hypothetical protein compare
Atu2344 -0.4 -1.3 lactoylglutathione lyase compare
Atu0126 -0.4 -2.5 membrane lipoprotein compare
Atu8162 -0.4 -0.7 hypothetical protein compare
Atu4148 -0.4 -2.0 UDP-glucuronic acid epimerase compare
Atu1077 -0.4 -1.4 DNA repair protein compare
Atu2810 -0.4 -3.1 cobalamin biosynthetic protein compare
Atu8190 -0.4 -2.4 hypothetical protein compare
Atu1581 -0.4 -1.1 hypothetical protein compare
Atu1467 -0.4 -1.5 hypothetical protein compare
Atu0947 -0.4 -1.8 transcriptional regulator, AsnC family compare
Atu8176 -0.4 -1.1 hypothetical protein compare
Atu4888 -0.4 -2.0 hypothetical protein compare
Atu4873 -0.4 -2.5 TetR family transcriptional regulator compare
Atu0946 -0.4 -3.3 dehydrogenase compare
Atu2073 -0.4 -1.8 membrane protein compare
Atu2796 -0.4 -1.8 precorrin-4 C11-methyltransferase compare
Atu0762 -0.4 -1.7 hypothetical protein compare
Atu0062 -0.4 -2.5 transcriptional regulator, ROK family compare
Atu4877 -0.4 -2.9 short-chain dehydrogenase compare
Atu8159 -0.4 -1.1 hypothetical protein compare
Atu3583 -0.4 -2.1 hypothetical protein compare
Atu1358 -0.4 -1.4 hypothetical protein compare
Atu4892 -0.4 -3.1 hypothetical protein compare
Atu0654 -0.4 -2.1 transcriptional regulator, LysR family compare
Atu3327 -0.4 -1.4 succinoglycan exopolysaccharide synthesis protein compare
Atu3763 -0.4 -0.7 hypothetical protein compare
Atu3175 -0.4 -2.2 hypothetical protein compare
Atu0751 -0.4 -1.8 ABC transporter, nucleotide binding/ATPase protein (cobalt) compare
Atu3395 -0.4 -2.3 iron (III ABC transporter permease ABC transporter permease compare
Atu4129 -0.4 -2.4 3-hydroxyisobutyrate dehydrogenase compare
Atu5045 -0.4 -1.0 hypothetical protein compare
Atu3603 -0.4 -1.1 two component response regulator compare
Atu5494 -0.4 -2.2 hypothetical protein compare
Atu4446 -0.4 -3.1 hypothetical protein compare
Atu2798 -0.4 -1.3 precorrin-6y methyltransferase compare
Atu1678 -0.4 -1.9 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu3013 -0.4 -1.8 hypothetical protein compare
Atu1559 -0.4 -1.6 hypothetical protein compare
Atu3397 -0.4 -2.2 hypothetical protein compare
Atu0981 -0.4 -3.0 glutamate-ammonia-ligase adenylyltransferase compare
Atu2420 -0.4 -2.6 hypothetical protein compare
Atu0322 -0.4 -1.7 enoyl CoA hydratase compare
Atu0149 -0.4 -1.3 enoyl-(acyl-carrier-protein) reductase compare
Atu2174 -0.4 -2.2 hypothetical protein compare
Atu0535 -0.4 -1.9 hypothetical protein compare
Atu4329 -0.4 -1.8 polysaccharide export protein compare
Atu3394 -0.4 -1.3 iron ABC transporter ATPase compare
Atu3026 -0.4 -1.9 short chain dehydrogenase compare
Atu8123 -0.4 -1.6 hypothetical protein compare
Atu3010 -0.4 -2.2 hypothetical protein compare
Atu3475 -0.4 -2.6 acetyl-CoA C-acetyltransferase compare
Atu3249 -0.4 -2.4 septum formation inhibitor compare
Atu4469 -0.4 -1.3 iron ABC transporter permease compare
Atu3162 -0.4 -2.5 LacI family transcriptional regulator compare
Atu1417 -0.4 -2.5 enoyl-CoA hydratase compare
Atu8117 -0.4 -1.8 hypothetical protein compare
Atu1667 -0.4 -0.9 hypothetical protein compare
Atu4147 -0.4 -2.4 glutathione synthetase compare
Atu3342 -0.4 -2.1 trehalose utilization-like protein compare
Atu1457 -0.4 -1.4 hypothetical protein compare
Atu1836 -0.4 -0.9 hypothetical protein compare
Atu2313 -0.4 -2.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress pinene across organisms