Experiment set11IT065 for Agrobacterium fabrum C58

Compare to:

LB with Gallic Acid 5 mM

200 most important genes:

  gene name fitness t score description  
Atu0999 -4.3 -9.9 magnesium transport protein compare
Atu0086 -3.0 -1.9 ribosome-binding factor A compare
Atu2125 -1.9 -3.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu0843 -1.8 -14.3 P type cation (metal) transporter, ATPase component compare
Atu0141 -1.7 -2.6 cytochrome O ubiquinol oxidase subunit I compare
Atu3009 -1.7 -1.9 exopolysaccharide production protein compare
Atu0030 -1.6 -2.8 phosphocarrier protein HPr compare
Atu8138 -1.5 -2.7 hypothetical protein compare
Atu3730 -1.4 -2.3 hypothetical protein compare
Atu1810 -1.3 -1.0 hypothetical protein compare
Atu0422 -1.3 -1.6 ABC transporter, membrane spanning protein compare
Atu2057 -1.3 -3.0 DNA helicase II compare
Atu0434 -1.3 -2.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3469 -1.3 -3.3 phosphoglyceromutase compare
Atu1030 -1.2 -1.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2439 -1.2 -2.6 hypothetical protein compare
Atu4217 -1.2 -2.3 TetR family transcriptional regulator compare
Atu4317 -1.2 -3.6 TetR family transcriptional regulator compare
Atu0031 -1.2 -1.9 PTS system, IIA component compare
Atu0533 -1.1 -3.0 putative inhibitor of septum formation compare
Atu0888 -1.1 -6.9 transcriptional regulator, MerR family compare
Atu1359 -1.1 -1.4 dnaK deletion suppressor protein compare
Atu4773 -1.1 -2.0 two component response regulator compare
Atu1163 -1.0 -2.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu3598 -1.0 -2.5 thiol:disulfide interchange protein compare
Atu0659 -1.0 -4.3 NTP pyrophosphohydrolase, MutT family compare
Atu0184 -1.0 -3.0 glucokinase compare
Atu0602 -0.9 -5.9 glutamine synthetase compare
Atu2800 -0.9 -1.9 precorrin-3B C17-methyltransferase compare
Atu1140 -0.9 -3.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2245 -0.9 -6.9 Na+/Pi-cotransporter compare
Atu4635 -0.9 -3.5 hypothetical protein compare
Atu3014 -0.9 -1.6 hypothetical protein compare
Atu0051 -0.9 -4.5 two component sensor kinase compare
Atu0421 -0.9 -1.5 ABC transporter, membrane spanning protein compare
Atu1542 -0.8 -4.4 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu5057 -0.8 -2.2 hypothetical protein compare
Atu1714 -0.8 -1.7 exonuclease III compare
Atu4540 -0.8 -1.5 protocatechuate 3,4-dioxygenase subunit beta compare
Atu1364 -0.8 -3.7 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4884 -0.8 -2.6 hypothetical protein compare
Atu0658 -0.8 -5.3 phosphate permease compare
Atu2728 -0.8 -3.1 beta (1-->2) glucan export ATP-binding protein compare
Atu0923 -0.8 -4.5 hypothetical protein compare
Atu1683 -0.8 -2.1 hypothetical protein compare
Atu2249 -0.7 -1.2 hypothetical protein compare
Atu2052 -0.7 -4.6 hypothetical protein compare
Atu0322 -0.7 -4.3 enoyl CoA hydratase compare
Atu2803 -0.7 -3.0 Cobalamin biosynthesis associated protein compare
Atu3999 -0.7 -2.2 dithiobiotin synthetase compare
Atu6098 -0.7 -1.0 transcriptional regulator, HTH family compare
Atu2694 -0.7 -1.5 hypothetical protein compare
Atu8202 -0.7 -2.6 hypothetical protein compare
Atu4616 -0.7 -1.0 dTDP-4-dehydrorhamnose reductase compare
Atu2832 -0.7 -3.2 tRNA modification GTPase compare
Atu0912 -0.7 -1.3 Na+/H+ antiporter compare
Atu0971 -0.7 -2.4 two component sensor kinase compare
Atu5430 -0.7 -1.1 hypothetical protein compare
Atu1850 -0.7 -2.4 phosphoribosylformylglycinamidine synthetase II compare
Atu0784 -0.7 -2.3 hypothetical protein compare
Atu1566 -0.7 -0.9 hypothetical protein compare
Atu2184 -0.7 -2.5 transcriptional regulator, AsnC family compare
Atu5160 -0.7 -1.9 transcriptional regulator protein compare
Atu0331 -0.7 -1.3 sigma-54 modulation protein compare
Atu1463 -0.7 -2.2 glycine cleavage system component H compare
Atu4881 -0.6 -3.7 hypothetical protein compare
Atu2464 -0.6 -1.7 formyltetrahydrofolate deformylase compare
Atu0399 -0.6 -2.9 dihydroorotase compare
Atu3496 -0.6 -1.6 hypothetical protein compare
Atu4514 -0.6 -2.6 RpiR family transcriptional regulator compare
Atu1847 -0.6 -1.6 hypothetical protein compare
Atu1028 -0.6 -1.5 hypothetical protein compare
Atu1470 -0.6 -1.1 Camphor resistance protein compare
Atu0050 -0.6 -3.1 two component response regulator compare
Atu3755 -0.6 -2.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1759 -0.6 -4.6 L-serine dehydratase compare
Atu4878 -0.6 -2.2 hypothetical protein compare
Atu3121 -0.6 -1.0 cold shock protein compare
Atu1874 -0.6 -2.0 RecA protein compare
Atu1457 -0.6 -2.0 hypothetical protein compare
Atu4889 -0.6 -2.8 hypothetical protein compare
Atu3018 -0.6 -2.1 hypothetical protein compare
Atu6114 -0.6 -1.7 hypothetical protein compare
Atu4099 -0.6 -3.3 hypothetical protein compare
Atu4161 -0.6 -1.3 hypothetical protein compare
Atu8117 -0.6 -1.3 hypothetical protein compare
Atu0185 -0.6 -3.6 methylglyoxal synthase compare
Atu3505 -0.6 -3.5 3-hydroxyisobutyryl-CoA hydrolase compare
Atu4888 -0.6 -2.6 hypothetical protein compare
Atu2140 -0.6 -1.4 hypothetical protein compare
Atu0153 -0.6 -2.6 transcriptional regulator, Fur family compare
Atu1074 -0.6 -3.8 NAD/NADP dependent oxidoreductase compare
Atu0638 -0.6 -1.4 hypothetical protein compare
Atu2591 -0.6 -3.1 glucosyltransferase compare
Atu2787 -0.6 -1.1 hypothetical protein compare
Atu3739 -0.6 -1.9 phosphoglycerate kinase compare
Atu0647 -0.6 -2.0 phosphoribosylamine--glycine ligase compare
Atu5045 -0.6 -1.7 hypothetical protein compare
Atu8096 -0.6 -1.3 hypothetical protein compare
Atu2073 -0.6 -2.5 membrane protein compare
Atu5115 -0.6 -0.7 hypothetical protein compare
Atu2831 -0.6 -2.4 glucose inhibited division protein A compare
Atu3510 -0.6 -1.6 amidohydrolase compare
Atu0142 -0.6 -1.7 cytochrome o ubiquinol oxidase subunit II compare
Atu0851 -0.5 -2.5 hypothetical protein compare
Atu0630 -0.5 -1.8 hypothetical protein compare
Atu0503 -0.5 -4.4 enoyl-CoA hydratase compare
Atu3754 -0.5 -2.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0749 -0.5 -1.9 biotin synthesis BioY protein compare
Atu3798 -0.5 -3.2 TetR family transcriptional regulator compare
Atu0501 -0.5 -3.9 acyl-CoA dehydrogenase compare
Atu0525 -0.5 -2.0 transcriptional regulator, LuxR family compare
Atu3623 -0.5 -2.1 DnaJ family molecular chaperone compare
Atu0486 -0.5 -2.8 dihydroorotate dehydrogenase compare
Atu4468 -0.5 -2.9 iron transport ABC transporter permease compare
Atu3010 -0.5 -3.0 hypothetical protein compare
Atu1679 -0.5 -1.7 peptidyl prolyl cis-trans isomerase compare
Atu3336 -0.5 -1.7 hypothetical protein compare
Atu2237 -0.5 -2.6 cytochrome c1 compare
Atu0977 -0.5 -2.4 serine protease DO-like protease compare
Atu5501 -0.5 -1.9 hypothetical protein compare
Atu3023 -0.5 -3.7 sugar ABC transporter permease compare
Atu1467 -0.5 -2.2 hypothetical protein compare
Atu2271 -0.5 -2.9 urease accessory protein compare
Atu1021 -0.5 -0.8 outer membrane protein compare
Atu3467 -0.5 -1.6 hypothetical protein compare
Atu2807 -0.5 -2.4 cob(I)alamin adenosyltransferase compare
Atu1439 -0.5 -1.2 hypothetical protein compare
Atu2026 -0.5 -2.3 exodeoxyribonuclease V compare
Atu1446 -0.5 -1.0 two component response regulator compare
Atu1614 -0.5 -3.3 phosphoglycolate phosphatase compare
Atu3015 -0.5 -2.7 hypothetical protein compare
Atu3750 -0.5 -1.4 thiamine-phosphate pyrophosphorylase compare
Atu4159 -0.5 -2.1 AsnC family transcriptional regulator compare
Atu0029 -0.5 -2.8 S-adenosylhomocysteine hydrolase compare
Atu2801 -0.5 -2.1 precorrin-2 C20 methyltransferase compare
Atu2805 -0.5 -3.1 cobalamin synthesis protein compare
Atu0036 -0.5 -1.7 hypothetical protein compare
Atu2532 -0.5 -1.7 transcriptional regulator, MarR family compare
Atu2795 -0.5 -2.8 cobalamin biosynthetic protein compare
Atu3020 -0.5 -2.8 GntR family transcriptional regulator compare
Atu2685 -0.5 -3.7 aconitate hydratase compare
Atu1184 -0.5 -1.2 hypothetical protein compare
Atu4879 -0.5 -2.8 hypothetical protein compare
Atu1577 -0.5 -1.8 ABC transporter, substrate binding protein (amino acid) compare
Atu1619 -0.5 -1.5 protein-export membrane protein SECG compare
Atu3021 -0.5 -3.3 sugar ABC transporter ATPase compare
Atu1308 -0.5 -2.2 aspartate carbamoyl transferase catalytic subunit compare
Atu4876 -0.5 -3.5 oxidoreductase compare
Atu1468 -0.5 -2.8 hypothetical protein compare
Atu4887 -0.5 -2.2 hypothetical protein compare
Atu1369 -0.5 -1.1 HIT family protein compare
Atu2793 -0.5 -2.3 cobyrinic acid a,c-diamide synthase compare
Atu3593 -0.5 -3.1 hypothetical protein compare
Atu1039 -0.5 -2.0 DNA repair protein RecO compare
Atu0070 -0.5 -3.0 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu1760 -0.5 -0.9 hypothetical protein compare
Atu0771 -0.5 -2.7 cytochrome c oxidase subunit III compare
Atu1836 -0.5 -1.2 hypothetical protein compare
Atu2798 -0.4 -1.4 precorrin-6y methyltransferase compare
Atu0769 -0.4 -0.7 protoheme IX farnesyltransferase compare
Atu1110 -0.4 -1.7 cytosol aminopeptidase compare
Atu0601 -0.4 -3.1 oxidoreductase compare
Atu0319 -0.4 -0.8 ubiquinone biosynthesis protein compare
Atu3668 -0.4 -1.7 siderophore biosynthesis protein compare
Atu2590 -0.4 -3.1 hypothetical protein compare
Atu4877 -0.4 -3.3 short-chain dehydrogenase compare
Atu1580 -0.4 -3.2 ABC transporter, nucleotide binding/ATPase protein (amino acid) compare
Atu4470 -0.4 -2.4 iron ABC transporter ATPase compare
Atu3746 -0.4 -2.1 hypothetical protein compare
Atu2684 -0.4 -0.9 hypothetical protein compare
Atu1076 -0.4 -1.8 colicin V production protein compare
Atu2650 -0.4 -3.1 glycerol-3-phosphate dehydrogenase compare
Atu2584 -0.4 -2.3 hypothetical protein compare
Atu2662 -0.4 -0.8 acetyltransferase compare
Atu0375 -0.4 -1.4 small heat shock protein compare
Atu1993 -0.4 -2.4 tRNA/rRNA metyltransferase compare
Atu1291 -0.4 -1.1 hypothetical protein compare
Atu8018 -0.4 -0.6 hypothetical protein compare
Atu2821 -0.4 -2.2 transcriptional regulator, GntR family compare
Atu3028 -0.4 -2.5 hypothetical protein compare
Atu2462 -0.4 -1.2 hypothetical protein compare
Atu0566 -0.4 -1.0 hypothetical protein compare
Atu1131 -0.4 -2.5 outer membrane protein compare
Atu1855 -0.4 -2.6 MFS permease compare
Atu0520 -0.4 -1.8 chemotaxis receiver protein compare
Atu1141 -0.4 -2.0 Phosphoribosylglycinamide synthetase compare
Atu1739 -0.4 -1.9 permease compare
Atu0298 -0.4 -2.4 orotidine 5 compare
Atu0592 -0.4 -2.2 ABC transporter, membrane spanning protein compare
Atu0189 -0.4 -0.9 ABC transporter, membrane spanning protein (peptide) compare
Atu4418 -0.4 -1.7 glutaryl-CoA dehydrogenase compare
Atu2582 -0.4 -2.3 UDP-glucose/GDP-mannose dehydrogenase compare
Atu0978 -0.4 -2.4 two component response regulator compare
Atu4890 -0.4 -0.9 IS426 transposase compare
Atu1550 -0.4 -1.4 polypeptide deformylase compare
Atu0701 -0.4 -2.7 GGDEF family protein compare
Atu4749 -0.4 -2.3 fructose transport system kinase compare
Atu3013 -0.4 -1.8 hypothetical protein compare
Atu2796 -0.4 -2.2 precorrin-4 C11-methyltransferase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Gallic Acid across organisms