Experiment set11IT063 for Agrobacterium fabrum C58

Compare to:

LB with Vanillin 1.25 mM

200 most detrimental genes:

  gene name fitness t score description  
Atu2067 +0.8 1.3 hypothetical protein compare
Atu5540 +0.8 1.4 hypothetical protein compare
Atu0585 +0.7 2.6 hypothetical protein compare
Atu3619 +0.7 2.9 hypothetical protein compare
Atu8161 +0.7 1.9 hypothetical protein compare
Atu2432 +0.7 1.6 hypothetical protein compare
Atu3001 +0.7 1.8 hypothetical protein compare
Atu0041 +0.6 1.8 glutamine amidotransferase compare
Atu3345 +0.6 2.5 6-pyruvoyl tetrahydrobiopterin synthase compare
Atu0809 +0.6 1.7 hypothetical protein compare
Atu1566 +0.6 1.4 hypothetical protein compare
Atu2489 +0.6 3.6 hypothetical protein compare
Atu4897 +0.6 1.1 hypothetical protein compare
Atu1086 +0.6 4.3 MFS permease compare
Atu1232 +0.6 1.9 hypothetical protein compare
Atu5468 +0.5 1.6 hypothetical protein compare
Atu2193 +0.5 0.9 hypothetical protein compare
Atu6165 +0.5 1.3 hypothetical protein compare
Atu1970 +0.5 2.0 hypothetical protein compare
Atu0188 +0.5 2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu3609 +0.5 2.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu0530 +0.5 3.5 UDP-galactose 4-epimerase compare
Atu1775 +0.5 2.4 polyketide biosynthesis associated protein compare
Atu1634 +0.5 1.1 hypothetical protein compare
Atu0948 +0.5 2.3 hypothetical protein compare
Atu1971 +0.5 1.9 hypothetical protein compare
Atu5173 +0.4 1.5 dehydrogenase compare
Atu4187 +0.4 0.9 tRNA-Met compare
Atu1007 +0.4 1.4 hypothetical protein compare
Atu5451 +0.4 0.7 hypothetical protein compare
Atu1892 +0.4 1.2 hypothetical protein compare
Atu4614 +0.4 2.7 glycosyltransferase compare
Atu1952 +0.4 1.0 hypothetical protein compare
Atu1182 +0.4 0.7 hypothetical protein compare
Atu0953 +0.4 0.8 hypothetical protein compare
Atu1387 +0.4 2.1 transcriptional regulator, GntR family compare
Atu4609 +0.4 3.0 glycosyltransferase compare
Atu5427 +0.4 2.1 hypothetical protein compare
Atu0238 +0.4 2.4 oxidoreductase compare
Atu0739 +0.4 1.5 hypothetical protein compare
Atu3604 +0.4 0.7 hypoxanthine phosphoribosyltransferase compare
Atu1087 +0.4 2.6 secretion protein compare
Atu1858 +0.4 2.1 hypothetical protein compare
Atu3044 +0.4 2.0 asparaginase compare
Atu8143 +0.4 1.8 hypothetical protein compare
Atu1098 +0.4 1.5 hypothetical protein compare
Atu2464 +0.4 1.4 formyltetrahydrofolate deformylase compare
Atu1236 +0.4 2.8 polysaccharide biosynthesis glycosyltransferase compare
Atu4743 +0.4 2.0 LacI family transcriptional regulator compare
Atu2183 +0.4 2.7 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0924 +0.4 1.1 hypothetical protein compare
Atu5430 +0.3 0.6 hypothetical protein compare
Atu3295 +0.3 1.6 hypothetical protein compare
Atu0538 +0.3 1.4 hypothetical protein compare
Atu3794 +0.3 2.3 FadR family transcriptional regulator compare
Atu4839 +0.3 2.4 C factor compare
Atu4514 +0.3 1.1 RpiR family transcriptional regulator compare
Atu2680 +0.3 2.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu4028 +0.3 1.3 recombination regulator RecX compare
Atu3647 +0.3 1.6 hypothetical protein compare
Atu6030 +0.3 2.0 ORF13 hypothetical protein compare
Atu1905 +0.3 1.4 short chain dehydrogenase compare
Atu2550 +0.3 2.8 RND multidrug efflux membrane permease compare
Atu3423 +0.3 0.5 hypothetical protein compare
Atu1864 +0.3 1.2 putative homoserine/homoserine lactone efflux protein compare
Atu4452 +0.3 1.5 hypothetical protein compare
Atu3835 +0.3 1.6 hypothetical protein compare
Atu5517 +0.3 1.4 hypothetical protein compare
Atu5163 +0.3 1.7 type IV secretion protein AvhB2 compare
Atu8032 +0.3 1.2 hypothetical protein compare
Atu2437 +0.3 1.3 hypothetical protein compare
Atu0115 +0.3 0.6 hypothetical protein compare
Atu1455 +0.3 1.2 hypothetical protein compare
Atu3254 +0.3 1.8 dicarboxylate ABC transporter ATPase compare
Atu0393 +0.3 1.6 ABC transporter, membrane spanning protein compare
Atu5489 +0.3 2.1 hypothetical protein compare
Atu5155 +0.3 1.3 MarR family transcriptional regulator compare
Atu4342 +0.3 1.1 hypothetical protein compare
Atu1835 +0.3 2.0 hypothetical protein compare
Atu3634 +0.3 1.5 penicillin-binding protein dacf precursor compare
Atu3808 +0.3 1.9 LysR family transcriptional regulator compare
Atu4050 +0.3 1.4 UTP-glucose-1-phosphate uridylyltransferase compare
Atu4214 +0.3 1.5 cold shock protein compare
Atu1639 +0.3 1.9 hypothetical protein compare
Atu4112 +0.3 2.1 proline dipeptidase compare
Atu2400 +0.3 2.0 hypothetical protein compare
Atu2204 +0.3 1.0 hypothetical protein compare
Atu3759 +0.3 0.7 hypothetical protein compare
Atu0280 +0.3 1.0 hypothetical protein compare
Atu0467 +0.3 1.4 hypothetical protein compare
Atu5470 +0.3 1.1 hypothetical protein compare
Atu3979 +0.3 1.8 dioxygenase compare
Atu2320 +0.3 1.1 transcriptional regulator, TetR family compare
Atu1078 +0.3 1.4 hypothetical protein compare
Atu4608 +0.3 2.5 hypothetical protein compare
Atu1889 +0.3 1.1 diacylglycerol kinase compare
Atu4507 +0.3 2.2 dehydrogenase compare
Atu8153 +0.3 1.2 hypothetical protein compare
Atu3773 +0.3 1.1 hypothetical protein compare
Atu1476 +0.3 2.3 esterase D compare
Atu0627 +0.3 1.6 carboxymethylenebutenolidase compare
Atu5421 +0.3 2.0 ABC transporter membrane spanning protein (putrescine) compare
Atu1358 +0.3 1.8 hypothetical protein compare
Atu0795 +0.3 0.6 hypothetical protein compare
Atu3461 +0.3 0.9 GntR family transcriptional regulator compare
Atu5207 +0.3 1.7 hypothetical protein compare
Atu4366 +0.3 1.6 short chain dehydrogenase compare
Atu3400 +0.3 0.8 hypothetical protein compare
Atu3415 +0.3 1.4 ABC transporter substrate binding protein compare
Atu0805 +0.3 1.3 hypothetical protein compare
Atu4326 +0.3 2.0 proline/glycine betaine transporter compare
Atu8130 +0.3 2.0 hypothetical protein compare
Atu3523 +0.3 2.0 polysaccharide biosynthesis-like protein compare
Atu1899 +0.3 1.7 ABC transporter, substrate binding protein (ribose) compare
Atu4662 +0.3 1.7 oligopeptide ABC transporter permease compare
Atu0580 +0.3 0.6 flagellar biosynthetic protein compare
Atu2294 +0.3 1.1 aminoglycoside N6'-acetyltransferase compare
Atu1240 +0.3 2.0 hypothetical protein compare
Atu4650 +0.3 1.9 sugar ABC transporter ATPase compare
Atu2379 +0.3 1.8 phosphomannomutase compare
Atu4200 +0.3 0.8 hypothetical protein compare
Atu0462 +0.3 2.2 endolysin compare
Atu6003 +0.3 2.0 C compare
Atu2551 +0.3 2.3 RND multidrug efflux transporter compare
Atu0421 +0.3 0.6 ABC transporter, membrane spanning protein compare
Atu3098 +0.3 2.0 sn-glycerol-3-phosphate ABC transporter membrane protein compare
Atu2157 +0.3 1.4 tyrosine/serine protein phosphatase compare
Atu3653 +0.3 1.2 hypothetical protein compare
Atu1518 +0.3 1.2 transcriptional regulator, Fur family compare
Atu4532 +0.3 2.1 shikimate 5-dehydrogenase compare
Atu1072 +0.3 1.2 hypothetical protein compare
Atu4095 +0.3 1.0 hypothetical protein compare
Atu0008 +0.3 1.7 hypothetical protein compare
Atu2441 +0.3 0.8 RNA methylase compare
Atu8166 +0.3 1.5 hypothetical protein compare
Atu0094 +0.3 1.6 hypothetical protein compare
Atu3331 +0.3 1.4 hypothetical protein compare
Atu4193 +0.3 1.4 oligopeptide ABC transporter permease compare
Atu0488 +0.3 0.7 hypothetical protein compare
Atu5170 +0.3 1.7 type IV secretion protein AvhB9 compare
Atu0026 +0.3 0.4 hypothetical protein compare
Atu3511 +0.3 1.2 glutaredoxin compare
Atu3311 +0.3 2.2 phosphomannose isomerase compare
Atu0105 +0.3 1.3 hypothetical protein compare
Atu0515 +0.3 1.2 hypothetical protein compare
Atu0936 +0.3 1.6 methyltransferase compare
Atu2827 +0.3 0.8 hypothetical protein compare
Atu0340 +0.3 0.6 SAM dependent methyltransferase compare
Atu2737 +0.3 1.5 oxidoredutase compare
Atu3286 +0.3 1.3 ABC transporter permease compare
Atu8063 +0.3 1.3 hypothetical protein compare
Atu0706 +0.3 1.5 transcriptional regulator, IclR family compare
Atu4508 +0.3 2.0 oxoreductase compare
Atu0167 +0.3 1.4 transcriptional regulator, AraC family compare
Atu1608 +0.3 1.5 hypothetical protein compare
Atu2132 +0.3 1.7 hypothetical protein compare
Atu3506 +0.3 1.2 hypothetical protein compare
Atu2491 +0.3 1.5 hypothetical protein compare
Atu4791 +0.3 1.2 hypothetical protein compare
Atu4557 +0.2 1.3 sugar ABC transporter permease compare
Atu1702 +0.2 1.4 stationary-phase survival protein compare
Atu4399 +0.2 1.7 hypothetical protein compare
Atu8188 +0.2 1.4 hypothetical protein compare
Atu3091 +0.2 1.3 hypothetical protein compare
Atu2507 +0.2 1.8 ABC transporter, membrane spanning protein (sugar) compare
Atu4869 +0.2 1.0 hypothetical protein compare
Atu4755 +0.2 1.7 amino acid ABC transporter substrate-binding protein compare
Atu6138 +0.2 1.4 Repressor of the acc and arc operons compare
Atu0419 +0.2 0.8 two component sensor kinase compare
Atu4144 +0.2 0.5 hypothetical protein compare
Atu4328 +0.2 1.5 hypothetical protein compare
Atu1085 +0.2 1.4 transcriptional regulator, MarR family compare
Atu1260 +0.2 0.6 hypothetical protein compare
Atu4733 +0.2 1.4 hypothetical protein compare
Atu4724 +0.2 0.8 hypothetical protein compare
Atu1517 +0.2 1.1 hypothetical protein compare
Atu2222 +0.2 1.5 dolichol-phosphate mannosyltransferase compare
Atu3299 +0.2 0.6 hypothetical protein compare
Atu1591 +0.2 1.0 hypothetical protein compare
Atu3443 +0.2 1.1 hypothetical protein compare
Atu4818 +0.2 1.4 AsnC family transcriptional regulator compare
Atu2478 +0.2 1.4 hypothetical protein compare
Atu4559 +0.2 1.7 sugar ABC transporter ATPase compare
Atu3225 +0.2 1.9 ABC transporter permease compare
Atu1361 +0.2 1.3 hypothetical protein compare
Atu3510 +0.2 0.8 amidohydrolase compare
Atu1550 +0.2 1.0 polypeptide deformylase compare
Atu5142 +0.2 0.8 hypothetical protein compare
Atu4617 +0.2 1.7 dTDP-D-glucose-4,6-dehydratase compare
Atu2573 +0.2 1.3 hypothetical protein compare
Atu3043 +0.2 1.8 hydantoinase beta subunit-like protein compare
Atu4846 +0.2 1.9 hypothetical protein compare
Atu8193 +0.2 1.2 hypothetical protein compare
Atu4407 +0.2 0.9 periplasmic nitrate reductase, NapD protein compare
Atu0200 +0.2 1.3 hypothetical protein compare
Atu0378 +0.2 1.3 hydrolase compare
Atu2574 +0.2 1.5 hypothetical protein compare
Atu4615 +0.2 1.9 glucose-1-phosphate thymidylyltransferase compare
Atu4583 +0.2 1.4 superoxide dismutase compare
Atu1137 +0.2 1.6 NTP pyrophosphohydrolase, MutT family compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Vanillin across organisms