Experiment set11IT059 for Agrobacterium fabrum C58

Compare to:

LB with Nerol 1.25 mM

200 most important genes:

  gene name fitness t score description  
Atu4072 -5.5 -3.8 nodulation protein N compare
Atu3469 -4.5 -4.3 phosphoglyceromutase compare
Atu0912 -3.7 -2.2 Na+/H+ antiporter compare
Atu4610 -3.7 -13.2 sugar nucleotide epimerase/dehydratase compare
Atu0769 -3.2 -2.9 protoheme IX farnesyltransferase compare
Atu4148 -3.2 -8.3 UDP-glucuronic acid epimerase compare
Atu2684 -3.0 -3.5 hypothetical protein compare
Atu4217 -3.0 -3.3 TetR family transcriptional regulator compare
Atu1030 -2.9 -1.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2590 -2.8 -12.4 hypothetical protein compare
Atu0141 -2.7 -3.2 cytochrome O ubiquinol oxidase subunit I compare
Atu2585 -2.5 -8.2 hypothetical protein compare
Atu0030 -2.5 -2.9 phosphocarrier protein HPr compare
Atu1359 -2.4 -1.9 dnaK deletion suppressor protein compare
Atu2582 -2.4 -8.1 UDP-glucose/GDP-mannose dehydrogenase compare
Atu2125 -2.3 -3.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu2591 -2.3 -10.5 glucosyltransferase compare
Atu2583 -2.3 -12.2 glycosyltransferase compare
Atu1739 -2.2 -6.1 permease compare
Atu0331 -2.2 -3.8 sigma-54 modulation protein compare
Atu2577 -2.2 -14.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu4149 -2.1 -11.6 UDP-glucose 6-dehydrogenase compare
Atu0977 -2.1 -6.1 serine protease DO-like protease compare
Atu1163 -2.1 -3.2 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2207 -2.1 -3.0 two component sensor kinase compare
Atu3763 -2.0 -2.3 hypothetical protein compare
Atu4317 -2.0 -4.6 TetR family transcriptional regulator compare
Atu0142 -2.0 -4.4 cytochrome o ubiquinol oxidase subunit II compare
Atu3598 -2.0 -3.3 thiol:disulfide interchange protein compare
Atu1810 -2.0 -1.0 hypothetical protein compare
Atu2584 -1.9 -4.5 hypothetical protein compare
Atu2592 -1.8 -7.1 hypothetical protein compare
Atu0050 -1.8 -5.8 two component response regulator compare
Atu0978 -1.8 -8.4 two component response regulator compare
Atu1327 -1.7 -4.9 NADH-ubiquinone oxidoreductase compare
Atu0533 -1.7 -2.8 putative inhibitor of septum formation compare
Atu4792 -1.7 -2.4 hypothetical protein compare
Atu0784 -1.7 -4.1 hypothetical protein compare
Atu2439 -1.6 -2.5 hypothetical protein compare
Atu0051 -1.6 -6.5 two component sensor kinase compare
Atu3779 -1.6 -8.1 lytic murein transglycosylase compare
Atu3798 -1.5 -6.8 TetR family transcriptional regulator compare
Atu1621 -1.5 -6.6 hypothetical protein compare
Atu1028 -1.5 -3.1 hypothetical protein compare
Atu3353 -1.5 -8.6 mannose-1-phosphate guanylyltransferase compare
Atu3009 -1.5 -1.4 exopolysaccharide production protein compare
Atu3202 -1.4 -12.2 RND multidrug efflux transporter compare
Atu3014 -1.4 -2.9 hypothetical protein compare
Atu3203 -1.4 -7.5 RND multidrug efflux membrane permease compare
Atu2722 -1.4 -8.0 porin compare
Atu0399 -1.4 -6.3 dihydroorotase compare
Atu0925 -1.4 -4.0 hypothetical protein compare
Atu2073 -1.4 -4.0 membrane protein compare
Atu0979 -1.3 -7.0 two component sensor kinase compare
Atu2052 -1.3 -5.4 hypothetical protein compare
Atu0361 -1.3 -3.3 transcriptional regulator compare
Atu1446 -1.3 -2.7 two component response regulator compare
Atu0971 -1.3 -4.1 two component sensor kinase compare
Atu0780 -1.3 -8.1 hypothetical protein compare
Atu1364 -1.2 -4.8 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0189 -1.2 -2.6 ABC transporter, membrane spanning protein (peptide) compare
Atu3001 -1.2 -1.4 hypothetical protein compare
Atu0926 -1.2 -4.4 hypothetical protein compare
Atu1646 -1.2 -5.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu0340 -1.2 -1.7 SAM dependent methyltransferase compare
Atu2728 -1.2 -4.0 beta (1-->2) glucan export ATP-binding protein compare
Atu1339 -1.2 -3.3 ribonuclease E compare
Atu2551 -1.2 -8.9 RND multidrug efflux transporter compare
Atu1099 -1.2 -5.4 hypothetical protein compare
Atu1439 -1.1 -2.0 hypothetical protein compare
Atu2824 -1.1 -4.3 hypothetical protein compare
Atu1175 -1.1 -1.9 hypothetical protein compare
Atu3008 -1.1 -1.1 hypothetical protein compare
Atu1308 -1.1 -5.1 aspartate carbamoyl transferase catalytic subunit compare
Atu2304 -1.1 -8.0 bacteroid development protein compare
Atu0486 -1.1 -4.9 dihydroorotate dehydrogenase compare
Atu2550 -1.1 -8.3 RND multidrug efflux membrane permease compare
Atu1645 -1.1 -4.7 ABC transporter, substrate binding protein compare
Atu0298 -1.1 -4.6 orotidine 5 compare
Atu1647 -1.1 -5.2 ABC transporter, membrane spanning protein compare
Atu1838 -1.1 -3.1 ABC transporter, substrate binding protein (amino acid) compare
Atu0188 -1.0 -3.2 ABC transporter, membrane spanning protein (peptide) compare
Atu0931 -1.0 -6.9 penicillin binding protein compare
Atu1307 -1.0 -3.6 dihydroorotase compare
Atu4055 -1.0 -4.3 endo-1,3-1,4-beta-glycanase compare
Atu1131 -1.0 -5.6 outer membrane protein compare
Atu2692 -1.0 -3.2 intracellular septation protein compare
Atu3013 -1.0 -3.4 hypothetical protein compare
Atu3311 -1.0 -7.4 phosphomannose isomerase compare
Atu2183 -1.0 -4.0 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1904 -1.0 -1.7 transcriptional regulator compare
Atu3780 -1.0 -4.0 hypothetical protein compare
Atu3016 -1.0 -4.6 phosphoglyceromutase compare
Atu8138 -1.0 -1.7 hypothetical protein compare
Atu0566 -0.9 -1.1 hypothetical protein compare
Atu1694 -0.9 -1.6 hypothetical protein compare
Atu0184 -0.9 -2.0 glucokinase compare
Atu8167 -0.9 -5.7 putative transmembrane protein compare
Atu4469 -0.9 -2.4 iron ABC transporter permease compare
Atu3886 -0.9 -4.9 lysophospholipase compare
Atu1570 -0.9 -0.9 hypothetical protein compare
Atu8095 -0.9 -5.3 hypothetical protein compare
Atu0687 -0.9 -1.4 hypothetical protein compare
Atu2662 -0.9 -0.9 acetyltransferase compare
Atu4889 -0.9 -4.0 hypothetical protein compare
Atu1056 -0.9 -3.6 hypothetical protein compare
Atu4077 -0.9 -5.6 glycogen branching protein compare
Atu0388 -0.9 -6.3 two component sensor kinase compare
Atu1644 -0.9 -2.4 hypothetical protein compare
Atu3032 -0.9 -2.1 hypothetical protein compare
Atu4882 -0.9 -1.8 hypothetical protein compare
Atu0257 -0.9 -5.6 hypothetical protein compare
Atu0153 -0.9 -3.6 transcriptional regulator, Fur family compare
Atu0434 -0.8 -2.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3019 -0.8 -4.2 hypothetical protein compare
Atu1219 -0.8 -0.7 hypothetical protein compare
Atu3015 -0.8 -3.3 hypothetical protein compare
Atu1484 -0.8 -3.3 transcriptional regulator compare
Atu0479 -0.8 -4.0 ABC transporter, substrate binding protein (amino acid) compare
Atu1683 -0.8 -2.0 hypothetical protein compare
Atu2344 -0.8 -2.7 lactoylglutathione lyase compare
Atu0400 -0.8 -2.8 orotate phosphoribosyltransferase compare
Atu0777 -0.8 -1.0 hypothetical protein compare
Atu0025 -0.8 -2.7 hypothetical protein compare
Atu8088 -0.8 -1.7 hypothetical protein compare
Atu3022 -0.8 -4.8 sugar ABC transporter permease compare
Atu0062 -0.8 -3.8 transcriptional regulator, ROK family compare
Atu1076 -0.8 -2.4 colicin V production protein compare
Atu1774 -0.7 -4.6 ABC transporter, substrate binding protein (peptide) compare
Atu1110 -0.7 -2.1 cytosol aminopeptidase compare
Atu6114 -0.7 -2.0 hypothetical protein compare
Atu3608 -0.7 -3.7 hypothetical protein compare
Atu4541 -0.7 -2.7 carboxymuconolactone decarboxylase compare
Atu0836 -0.7 -2.0 Glutathione-S-transferase compare
Atu1634 -0.7 -1.6 hypothetical protein compare
Atu0768 -0.7 -5.1 cytochrome-c oxidase chain I compare
Atu1286 -0.7 -2.6 hypothetical protein compare
Atu0759 -0.7 -4.5 hypothetical protein compare
Atu4527 -0.7 -1.5 hypothetical protein compare
Atu3739 -0.7 -1.9 phosphoglycerate kinase compare
Atu2799 -0.7 -3.0 precorrin-6x reductase compare
Atu8096 -0.7 -1.4 hypothetical protein compare
Atu1850 -0.7 -2.7 phosphoribosylformylglycinamidine synthetase II compare
Atu3018 -0.7 -2.0 hypothetical protein compare
Atu1373 -0.7 -4.4 hypothetical protein compare
Atu4418 -0.7 -2.1 glutaryl-CoA dehydrogenase compare
Atu3429 -0.7 -1.2 hypothetical protein compare
Atu1333 -0.7 -1.9 outer membrane protein compare
Atu4881 -0.7 -3.5 hypothetical protein compare
Atu4888 -0.7 -2.8 hypothetical protein compare
Atu0638 -0.7 -2.1 hypothetical protein compare
Atu1592 -0.7 -3.5 hypothetical protein compare
Atu4878 -0.7 -2.2 hypothetical protein compare
Atu5125 -0.7 -3.1 GntR family transcriptional regulator compare
Atu0138 -0.7 -3.6 surfeit 1 compare
Atu2795 -0.7 -3.6 cobalamin biosynthetic protein compare
Atu8159 -0.7 -2.1 hypothetical protein compare
Atu0322 -0.6 -3.6 enoyl CoA hydratase compare
Atu3727 -0.6 -2.4 hypothetical protein compare
Atu4880 -0.6 -4.5 AraC family transcriptional regulator compare
Atu8117 -0.6 -1.5 hypothetical protein compare
Atu0124 -0.6 -3.0 hypothetical protein compare
Atu8093 -0.6 -2.9 hypothetical protein compare
Atu1469 -0.6 -1.9 hypothetical protein compare
Atu3730 -0.6 -1.2 hypothetical protein compare
Atu4879 -0.6 -3.4 hypothetical protein compare
Atu0039 -0.6 -1.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu2201 -0.6 -1.0 hydrolase compare
Atu3963 -0.6 -3.8 GntR family transcriptional regulator compare
Atu1140 -0.6 -3.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2614 -0.6 -3.1 hypothetical protein compare
Atu0190 -0.6 -3.0 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0355 -0.6 -3.9 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu3248 -0.6 -3.3 cell division inhibitor compare
Atu2532 -0.6 -2.6 transcriptional regulator, MarR family compare
Atu0876 -0.6 -1.3 superoxide dismutase compare
Atu0806 -0.6 -4.3 hypothetical protein compare
Atu2555 -0.6 -2.0 L-lysine 2,3-aminomutase compare
Atu3023 -0.6 -3.5 sugar ABC transporter permease compare
Atu0101 -0.6 -2.6 cytochrome c compare
Atu2793 -0.6 -2.9 cobyrinic acid a,c-diamide synthase compare
Atu4446 -0.6 -3.9 hypothetical protein compare
Atu6098 -0.6 -0.7 transcriptional regulator, HTH family compare
Atu1258 -0.6 -2.7 ATP-dependent Clp protease, proteolytic subunit compare
Atu5519 -0.6 -3.1 hypothetical protein compare
Atu1685 -0.6 -0.8 hypothetical protein compare
Atu0689 -0.6 -4.3 ribosomal large subunit pseudouridine synthase B compare
Atu0939 -0.6 -1.8 PemI protein compare
Atu2057 -0.6 -1.5 DNA helicase II compare
Atu1103 -0.6 -2.1 rRNA-adenine N6,N6-dimethyltransferase compare
Atu3486 -0.6 -1.8 DeoR family transcriptional regulator compare
Atu0535 -0.6 -1.8 hypothetical protein compare
Atu2043 -0.6 -3.4 htrA family protein compare
Atu4099 -0.6 -3.7 hypothetical protein compare
Atu0590 -0.6 -3.4 transcriptional regulator repressor compare
Atu3024 -0.5 -3.8 sugar ABC transporter permease compare
Atu2831 -0.5 -2.4 glucose inhibited division protein A compare
Atu5057 -0.5 -0.9 hypothetical protein compare
Atu0357 -0.5 -3.0 phosphate starvation inducible protein compare
Atu2640 -0.5 -2.2 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For stress Nerol in Agrobacterium fabrum C58

For stress Nerol across organisms