Experiment set11IT056 for Agrobacterium fabrum C58

Compare to:

LB with Ferulic Acid 1.25 mM

200 most important genes:

  gene name fitness t score description  
Atu3730 -2.7 -3.0 hypothetical protein compare
Atu0422 -1.9 -3.4 ABC transporter, membrane spanning protein compare
Atu0184 -1.8 -4.2 glucokinase compare
Atu3469 -1.6 -4.0 phosphoglyceromutase compare
Atu3429 -1.6 -2.3 hypothetical protein compare
Atu3739 -1.4 -3.9 phosphoglycerate kinase compare
Atu0421 -1.3 -1.9 ABC transporter, membrane spanning protein compare
Atu0040 -1.2 -0.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0999 -1.2 -7.0 magnesium transport protein compare
Atu3598 -1.1 -2.2 thiol:disulfide interchange protein compare
Atu2793 -1.1 -4.9 cobyrinic acid a,c-diamide synthase compare
Atu2439 -1.1 -2.2 hypothetical protein compare
Atu0659 -1.1 -5.1 NTP pyrophosphohydrolase, MutT family compare
Atu0912 -1.1 -1.9 Na+/H+ antiporter compare
Atu2803 -1.0 -3.8 Cobalamin biosynthesis associated protein compare
Atu4773 -1.0 -2.2 two component response regulator compare
Atu4317 -1.0 -3.4 TetR family transcriptional regulator compare
Atu2801 -1.0 -3.2 precorrin-2 C20 methyltransferase compare
Atu0030 -1.0 -2.0 phosphocarrier protein HPr compare
Atu2592 -1.0 -5.5 hypothetical protein compare
Atu2684 -1.0 -1.7 hypothetical protein compare
Atu1446 -1.0 -2.1 two component response regulator compare
Atu0601 -1.0 -7.2 oxidoreductase compare
Atu2800 -1.0 -4.4 precorrin-3B C17-methyltransferase compare
Atu0419 -1.0 -2.1 two component sensor kinase compare
Atu0331 -1.0 -2.6 sigma-54 modulation protein compare
Atu2807 -1.0 -4.9 cob(I)alamin adenosyltransferase compare
Atu2125 -1.0 -1.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu2582 -1.0 -5.7 UDP-glucose/GDP-mannose dehydrogenase compare
Atu0658 -0.9 -5.2 phosphate permease compare
Atu1846 -0.9 -1.6 hypothetical protein compare
Atu2640 -0.9 -2.9 hypothetical protein compare
Atu1030 -0.9 -1.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0142 -0.9 -2.6 cytochrome o ubiquinol oxidase subunit II compare
Atu0319 -0.9 -1.4 ubiquinone biosynthesis protein compare
Atu1086 -0.9 -6.3 MFS permease compare
Atu1308 -0.9 -4.6 aspartate carbamoyl transferase catalytic subunit compare
Atu2590 -0.9 -6.3 hypothetical protein compare
Atu0486 -0.9 -3.3 dihydroorotate dehydrogenase compare
Atu1087 -0.9 -5.4 secretion protein compare
Atu0400 -0.8 -3.3 orotate phosphoribosyltransferase compare
Atu2809 -0.8 -5.3 cobalamin biosynthesis protein compare
Atu4878 -0.8 -3.5 hypothetical protein compare
Atu0051 -0.8 -4.0 two component sensor kinase compare
Atu2796 -0.8 -4.2 precorrin-4 C11-methyltransferase compare
Atu2692 -0.8 -2.9 intracellular septation protein compare
Atu8202 -0.8 -2.7 hypothetical protein compare
Atu4148 -0.8 -3.9 UDP-glucuronic acid epimerase compare
Atu0039 -0.8 -1.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu4884 -0.8 -3.3 hypothetical protein compare
Atu2804 -0.8 -5.8 cobaltochelatase subunit compare
Atu1110 -0.8 -2.4 cytosol aminopeptidase compare
Atu0723 -0.8 -1.4 FAD dependent oxidoreductase compare
Atu2207 -0.8 -2.9 two component sensor kinase compare
Atu3023 -0.8 -5.1 sugar ABC transporter permease compare
Atu0769 -0.7 -1.1 protoheme IX farnesyltransferase compare
Atu0298 -0.7 -4.3 orotidine 5 compare
Atu1417 -0.7 -3.8 enoyl-CoA hydratase compare
Atu0031 -0.7 -1.3 PTS system, IIA component compare
Atu4540 -0.7 -2.0 protocatechuate 3,4-dioxygenase subunit beta compare
Atu4217 -0.7 -1.5 TetR family transcriptional regulator compare
Atu1219 -0.7 -0.8 hypothetical protein compare
Atu6114 -0.7 -3.4 hypothetical protein compare
Atu0368 -0.7 -3.4 tRNA pseudouridine synthase I compare
Atu2583 -0.7 -5.1 glycosyltransferase compare
Atu4875 -0.7 -3.8 hypothetical protein compare
Atu1850 -0.7 -2.1 phosphoribosylformylglycinamidine synthetase II compare
Atu1891 -0.7 -2.5 cobalamin biosynthesis protein compare
Atu2805 -0.7 -3.7 cobalamin synthesis protein compare
Atu2832 -0.7 -3.3 tRNA modification GTPase compare
Atu1980 -0.7 -1.4 hypothetical protein compare
Atu2577 -0.7 -5.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu1364 -0.7 -3.8 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1302 -0.7 -2.3 hypothetical protein compare
Atu3016 -0.7 -3.8 phosphoglyceromutase compare
Atu3018 -0.7 -2.9 hypothetical protein compare
Atu2831 -0.7 -3.2 glucose inhibited division protein A compare
Atu8096 -0.7 -1.4 hypothetical protein compare
Atu1619 -0.7 -2.3 protein-export membrane protein SECG compare
Atu0322 -0.6 -4.1 enoyl CoA hydratase compare
Atu3754 -0.6 -4.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3505 -0.6 -4.5 3-hydroxyisobutyryl-CoA hydrolase compare
Atu4149 -0.6 -4.8 UDP-glucose 6-dehydrogenase compare
Atu4873 -0.6 -4.1 TetR family transcriptional regulator compare
Atu2808 -0.6 -3.5 cobyric acid synthase compare
Atu0971 -0.6 -2.5 two component sensor kinase compare
Atu0399 -0.6 -3.1 dihydroorotase compare
Atu0225 -0.6 -0.9 hypothetical protein compare
Atu1677 -0.6 -2.3 queuine tRNA-ribosyltransferase compare
Atu2591 -0.6 -3.7 glucosyltransferase compare
Atu2626 -0.6 -2.6 hypothetical protein compare
Atu0141 -0.6 -1.3 cytochrome O ubiquinol oxidase subunit I compare
Atu0654 -0.6 -3.7 transcriptional regulator, LysR family compare
Atu2795 -0.6 -3.6 cobalamin biosynthetic protein compare
Atu3020 -0.6 -3.5 GntR family transcriptional regulator compare
Atu2270 -0.6 -1.5 ATP-dependent Clp protease, proteolytic subunit compare
Atu0843 -0.6 -5.1 P type cation (metal) transporter, ATPase component compare
Atu4541 -0.6 -2.5 carboxymuconolactone decarboxylase compare
Atu3963 -0.6 -3.1 GntR family transcriptional regulator compare
Atu0977 -0.6 -2.5 serine protease DO-like protease compare
Atu1052 -0.6 -2.3 hypothetical protein compare
Atu0185 -0.6 -1.7 methylglyoxal synthase compare
Atu5010 -0.6 -2.0 hypothetical protein compare
Atu3021 -0.6 -4.1 sugar ABC transporter ATPase compare
Atu0062 -0.6 -3.4 transcriptional regulator, ROK family compare
Atu3010 -0.6 -3.7 hypothetical protein compare
Atu0050 -0.6 -2.9 two component response regulator compare
Atu3121 -0.6 -1.0 cold shock protein compare
Atu1439 -0.6 -1.8 hypothetical protein compare
Atu3468 -0.6 -0.7 hypothetical protein compare
Atu4538 -0.6 -4.2 3-carboxy-cis,cis-muconate cycloisomerase compare
Atu0602 -0.6 -3.6 glutamine synthetase compare
Atu1678 -0.6 -3.3 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu4887 -0.6 -2.3 hypothetical protein compare
Atu3485 -0.6 -3.7 short chain dehydrogenase compare
Atu0784 -0.6 -1.3 hypothetical protein compare
Atu3017 -0.6 -0.8 phosphoglyceromutase compare
Atu2585 -0.6 -2.7 hypothetical protein compare
Atu4879 -0.6 -3.5 hypothetical protein compare
Atu1503 -0.6 -0.9 hypothetical protein compare
Atu3013 -0.6 -2.7 hypothetical protein compare
Atu3727 -0.5 -1.9 hypothetical protein compare
Atu8170 -0.5 -1.7 hypothetical protein compare
Atu2450 -0.5 -1.8 hypothetical protein compare
Atu0115 -0.5 -0.9 hypothetical protein compare
Atu2797 -0.5 -1.3 cobalamin biosynthesis protein compare
Atu4876 -0.5 -3.9 oxidoreductase compare
Atu4888 -0.5 -2.2 hypothetical protein compare
Atu2378 -0.5 -2.0 hypothetical protein compare
Atu3022 -0.5 -3.7 sugar ABC transporter permease compare
Atu0434 -0.5 -1.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3028 -0.5 -3.8 hypothetical protein compare
Atu4468 -0.5 -3.1 iron transport ABC transporter permease compare
Atu3019 -0.5 -3.8 hypothetical protein compare
Atu2634 -0.5 -1.5 hypothetical protein compare
Atu2073 -0.5 -2.2 membrane protein compare
Atu4635 -0.5 -3.2 hypothetical protein compare
Atu1225 -0.5 -1.2 hypothetical protein compare
Atu3014 -0.5 -1.1 hypothetical protein compare
Atu2766 -0.5 -4.5 NAD-glutamate dehydrogenase compare
Atu2584 -0.5 -2.4 hypothetical protein compare
Atu4881 -0.5 -3.1 hypothetical protein compare
Atu4880 -0.5 -3.5 AraC family transcriptional regulator compare
Atu2802 -0.5 -2.4 precorrin-8X methylmutase compare
Atu3480 -0.5 -2.8 hydroxymethylglutaryl-CoA lyase compare
Atu0029 -0.5 -2.7 S-adenosylhomocysteine hydrolase compare
Atu2057 -0.5 -1.4 DNA helicase II compare
Atu2124 -0.5 -2.7 transcriptional regulator, ArsR family compare
Atu2746 -0.5 -1.8 hypothetical protein compare
Atu3466 -0.5 -1.5 ArsR family transcriptional regulator compare
Atu4458 -0.5 -2.2 hypothetical protein compare
Atu1354 -0.5 -0.7 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1542 -0.5 -2.4 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu0025 -0.5 -1.8 hypothetical protein compare
Atu1075 -0.5 -2.5 amidophosphoribosyltransferase compare
Atu3910 -0.5 -2.8 LamB/YcsF family protein compare
Atu1338 -0.5 -2.7 3-oxoacyl-(acyl carrier protein) reductase compare
Atu1804 -0.5 -2.9 hypothetical protein compare
Atu0340 -0.5 -1.4 SAM dependent methyltransferase compare
Atu1204 -0.5 -2.5 potassium uptake protein compare
Atu1359 -0.5 -0.7 dnaK deletion suppressor protein compare
Atu1140 -0.5 -2.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0885 -0.5 -1.9 hypothetical protein compare
Atu1685 -0.5 -0.7 hypothetical protein compare
Atu3015 -0.5 -2.1 hypothetical protein compare
Atu0524 -0.5 -2.3 transcriptional regulator, LuxR family compare
Atu4129 -0.4 -2.1 3-hydroxyisobutyrate dehydrogenase compare
Atu2650 -0.4 -2.9 glycerol-3-phosphate dehydrogenase compare
Atu1683 -0.4 -1.1 hypothetical protein compare
Atu4872 -0.4 -3.7 LysR family transcriptional regulator compare
Atu4864 -0.4 -2.0 MarR family transcriptional regulator compare
Atu2146 -0.4 -1.7 hypothetical protein compare
Atu8099 -0.4 -1.6 hypothetical protein compare
Atu3194 -0.4 -2.6 acetyltransferase compare
Atu2787 -0.4 -0.6 hypothetical protein compare
Atu1679 -0.4 -1.5 peptidyl prolyl cis-trans isomerase compare
Atu1902 -0.4 -2.2 transketolase compare
Atu2052 -0.4 -2.5 hypothetical protein compare
Atu1620 -0.4 -2.9 triosephosphate isomerase compare
Atu0836 -0.4 -1.5 Glutathione-S-transferase compare
Atu3169 -0.4 -2.1 sorbitol/mannitol ABC transporter permease compare
Atu4674 -0.4 -3.4 GntR family transcriptional regulator compare
Atu0043 -0.4 -1.3 imidazoleglycerol-phosphate dehydratase compare
Atu3030 -0.4 -1.9 hypothetical protein compare
Atu3026 -0.4 -2.6 short chain dehydrogenase compare
Atu2799 -0.4 -2.1 precorrin-6x reductase compare
Atu0445 -0.4 -2.3 hypothetical protein compare
Atu0638 -0.4 -1.1 hypothetical protein compare
Atu1333 -0.4 -1.3 outer membrane protein compare
Atu1518 -0.4 -2.2 transcriptional regulator, Fur family compare
Atu3160 -0.4 -1.7 hypothetical protein compare
Atu0477 -0.4 -1.0 hypothetical protein compare
Atu3593 -0.4 -2.9 hypothetical protein compare
Atu3478 -0.4 -2.9 3-methylcrotonoyl-CoA carboxylase beta subunit compare
Atu1573 -0.4 -0.7 hypothetical protein compare
Atu3327 -0.4 -1.8 succinoglycan exopolysaccharide synthesis protein compare
Atu0317 -0.4 -1.9 hypothetical protein compare
Atu3001 -0.4 -0.7 hypothetical protein compare
Atu3912 -0.4 -2.7 hypothetical protein compare
Atu0525 -0.4 -2.2 transcriptional regulator, LuxR family compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Ferulic Acid across organisms