Experiment set11IT055 for Agrobacterium fabrum C58

Compare to:

LB with Ferulic Acid 1.25 mM

200 most important genes:

  gene name fitness t score description  
Atu3469 -2.2 -4.6 phosphoglyceromutase compare
Atu0421 -1.8 -2.4 ABC transporter, membrane spanning protein compare
Atu0434 -1.4 -3.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2125 -1.4 -2.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu3730 -1.4 -1.8 hypothetical protein compare
Atu0659 -1.3 -5.7 NTP pyrophosphohydrolase, MutT family compare
Atu3739 -1.3 -3.3 phosphoglycerate kinase compare
Atu4882 -1.3 -2.4 hypothetical protein compare
Atu0912 -1.2 -2.2 Na+/H+ antiporter compare
Atu4148 -1.2 -5.4 UDP-glucuronic acid epimerase compare
Atu0769 -1.1 -1.9 protoheme IX farnesyltransferase compare
Atu2207 -1.1 -3.7 two component sensor kinase compare
Atu0331 -1.1 -2.1 sigma-54 modulation protein compare
Atu0225 -1.1 -1.5 hypothetical protein compare
Atu2793 -1.1 -4.1 cobyrinic acid a,c-diamide synthase compare
Atu0658 -1.1 -6.2 phosphate permease compare
Atu0999 -1.1 -5.5 magnesium transport protein compare
Atu0601 -1.0 -6.8 oxidoreductase compare
Atu0486 -1.0 -4.9 dihydroorotate dehydrogenase compare
Atu0030 -1.0 -2.1 phosphocarrier protein HPr compare
Atu1030 -1.0 -1.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1573 -1.0 -1.8 hypothetical protein compare
Atu2585 -0.9 -5.1 hypothetical protein compare
Atu2590 -0.9 -6.8 hypothetical protein compare
Atu4888 -0.9 -3.0 hypothetical protein compare
Atu0399 -0.9 -4.1 dihydroorotase compare
Atu4879 -0.9 -5.6 hypothetical protein compare
Atu4541 -0.9 -4.0 carboxymuconolactone decarboxylase compare
Atu3014 -0.9 -1.8 hypothetical protein compare
Atu3467 -0.9 -2.7 hypothetical protein compare
Atu0298 -0.9 -3.9 orotidine 5 compare
Atu3012 -0.9 -1.5 hypothetical protein compare
Atu3023 -0.9 -5.4 sugar ABC transporter permease compare
Atu4317 -0.9 -2.2 TetR family transcriptional regulator compare
Atu2796 -0.8 -3.9 precorrin-4 C11-methyltransferase compare
Atu2591 -0.8 -4.6 glucosyltransferase compare
Atu0422 -0.8 -1.9 ABC transporter, membrane spanning protein compare
Atu2684 -0.8 -1.6 hypothetical protein compare
Atu4773 -0.8 -1.9 two component response regulator compare
Atu2073 -0.8 -3.3 membrane protein compare
Atu0784 -0.8 -2.5 hypothetical protein compare
Atu0977 -0.8 -2.2 serine protease DO-like protease compare
Atu1359 -0.8 -1.1 dnaK deletion suppressor protein compare
Atu0184 -0.8 -2.5 glucokinase compare
Atu1446 -0.8 -1.4 two component response regulator compare
Atu4881 -0.8 -4.4 hypothetical protein compare
Atu0051 -0.8 -4.0 two component sensor kinase compare
Atu2831 -0.8 -3.8 glucose inhibited division protein A compare
Atu3020 -0.8 -4.0 GntR family transcriptional regulator compare
Atu1308 -0.7 -2.8 aspartate carbamoyl transferase catalytic subunit compare
Atu2583 -0.7 -5.1 glycosyltransferase compare
Atu3021 -0.7 -4.9 sugar ABC transporter ATPase compare
Atu1417 -0.7 -4.7 enoyl-CoA hydratase compare
Atu2800 -0.7 -2.7 precorrin-3B C17-methyltransferase compare
Atu1542 -0.7 -3.8 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu8087 -0.7 -1.0 putative peptidoglycan binding protein compare
Atu2648 -0.7 -3.1 hypothetical protein compare
Atu3022 -0.7 -4.7 sugar ABC transporter permease compare
Atu1810 -0.7 -1.3 hypothetical protein compare
Atu0886 -0.7 -1.0 hypothetical protein compare
Atu4149 -0.7 -4.3 UDP-glucose 6-dehydrogenase compare
Atu0142 -0.7 -2.3 cytochrome o ubiquinol oxidase subunit II compare
Atu2577 -0.6 -5.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu2805 -0.6 -3.3 cobalamin synthesis protein compare
Atu8054 -0.6 -0.8 hypothetical protein compare
Atu8202 -0.6 -2.8 hypothetical protein compare
Atu1163 -0.6 -1.6 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2582 -0.6 -3.4 UDP-glucose/GDP-mannose dehydrogenase compare
Atu3013 -0.6 -2.2 hypothetical protein compare
Atu4133 -0.6 -1.2 hypothetical protein compare
Atu4469 -0.6 -2.1 iron ABC transporter permease compare
Atu2809 -0.6 -3.9 cobalamin biosynthesis protein compare
Atu4873 -0.6 -4.0 TetR family transcriptional regulator compare
Atu2584 -0.6 -3.3 hypothetical protein compare
Atu4878 -0.6 -2.9 hypothetical protein compare
Atu2640 -0.6 -2.4 hypothetical protein compare
Atu2354 -0.6 -1.6 transcriptional regulator, MarR family compare
Atu0895 -0.6 -1.8 ABC transporter, substrate binding protein compare
Atu4875 -0.6 -2.4 hypothetical protein compare
Atu4877 -0.6 -4.7 short-chain dehydrogenase compare
Atu1364 -0.6 -3.3 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2804 -0.6 -4.2 cobaltochelatase subunit compare
Atu4884 -0.6 -1.7 hypothetical protein compare
Atu2067 -0.6 -0.7 hypothetical protein compare
Atu4887 -0.6 -2.5 hypothetical protein compare
Atu0843 -0.6 -4.9 P type cation (metal) transporter, ATPase component compare
Atu3461 -0.6 -0.8 GntR family transcriptional regulator compare
Atu3019 -0.6 -3.6 hypothetical protein compare
Atu4880 -0.6 -4.0 AraC family transcriptional regulator compare
Atu3008 -0.6 -0.7 hypothetical protein compare
Atu3015 -0.6 -3.0 hypothetical protein compare
Atu0039 -0.6 -1.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu1087 -0.6 -3.4 secretion protein compare
Atu3336 -0.6 -1.6 hypothetical protein compare
Atu3755 -0.6 -2.7 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2802 -0.6 -3.9 precorrin-8X methylmutase compare
Atu8093 -0.6 -2.0 hypothetical protein compare
Atu2799 -0.6 -2.6 precorrin-6x reductase compare
Atu2650 -0.6 -4.5 glycerol-3-phosphate dehydrogenase compare
Atu2808 -0.6 -2.9 cobyric acid synthase compare
Atu2592 -0.5 -3.0 hypothetical protein compare
Atu0062 -0.5 -3.8 transcriptional regulator, ROK family compare
Atu1678 -0.5 -2.7 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu1513 -0.5 -2.3 ABC excinuclease subunit A compare
Atu3016 -0.5 -2.7 phosphoglyceromutase compare
Atu0038 -0.5 -2.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0647 -0.5 -2.7 phosphoribosylamine--glycine ligase compare
Atu2617 -0.5 -2.2 chemotaxis protein compare
Atu0524 -0.5 -3.2 transcriptional regulator, LuxR family compare
Atu3395 -0.5 -3.0 iron (III ABC transporter permease ABC transporter permease compare
Atu2832 -0.5 -2.5 tRNA modification GTPase compare
Atu3009 -0.5 -0.6 exopolysaccharide production protein compare
Atu4872 -0.5 -3.5 LysR family transcriptional regulator compare
Atu3024 -0.5 -3.5 sugar ABC transporter permease compare
Atu0086 -0.5 -0.8 ribosome-binding factor A compare
Atu3025 -0.5 -4.3 oligo alginate lyase compare
Atu8162 -0.5 -0.9 hypothetical protein compare
Atu3032 -0.5 -1.6 hypothetical protein compare
Atu0413 -0.5 -0.6 stress induced protein compare
Atu0368 -0.5 -2.3 tRNA pseudouridine synthase I compare
Atu1801 -0.5 -1.8 hypothetical protein compare
Atu0040 -0.5 -0.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1086 -0.5 -3.9 MFS permease compare
Atu0185 -0.5 -3.2 methylglyoxal synthase compare
Atu0598 -0.5 -3.2 phosphogluconate dehydratase compare
Atu1850 -0.5 -2.2 phosphoribosylformylglycinamidine synthetase II compare
Atu3483 -0.5 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu3030 -0.5 -3.1 hypothetical protein compare
Atu3018 -0.5 -2.2 hypothetical protein compare
Atu0630 -0.5 -1.6 hypothetical protein compare
Atu0050 -0.5 -2.6 two component response regulator compare
Atu0525 -0.5 -1.6 transcriptional regulator, LuxR family compare
Atu2163 -0.5 -0.9 hypothetical protein compare
Atu2052 -0.5 -3.1 hypothetical protein compare
Atu2801 -0.5 -2.2 precorrin-2 C20 methyltransferase compare
Atu0602 -0.5 -2.7 glutamine synthetase compare
Atu1759 -0.5 -3.0 L-serine dehydratase compare
Atu1677 -0.5 -2.1 queuine tRNA-ribosyltransferase compare
Atu4868 -0.5 -3.5 oxidoreductase compare
Atu3028 -0.5 -3.1 hypothetical protein compare
Atu2786 -0.5 -2.3 hypothetical protein compare
Atu3963 -0.5 -3.4 GntR family transcriptional regulator compare
Atu1009 -0.5 -1.4 hypothetical protein compare
Atu1463 -0.5 -1.7 glycine cleavage system component H compare
Atu1019 -0.5 -1.5 hypothetical protein compare
Atu4864 -0.5 -2.0 MarR family transcriptional regulator compare
Atu2083 -0.5 -1.7 DNA repair protein RecN compare
Atu0842 -0.5 -1.1 hypothetical protein compare
Atu3740 -0.5 -3.2 fructose bisphosphate aldolase compare
Atu4889 -0.5 -1.8 hypothetical protein compare
Atu1026 -0.5 -1.3 hypothetical protein compare
Atu4876 -0.4 -3.4 oxidoreductase compare
Atu0496 -0.4 -2.3 hypothetical protein compare
Atu2798 -0.4 -2.1 precorrin-6y methyltransferase compare
Atu0885 -0.4 -1.8 hypothetical protein compare
Atu1176 -0.4 -1.9 hypothetical protein compare
Atu2807 -0.4 -2.7 cob(I)alamin adenosyltransferase compare
Atu2803 -0.4 -2.0 Cobalamin biosynthesis associated protein compare
Atu8158 -0.4 -0.9 hypothetical protein compare
Atu0947 -0.4 -1.8 transcriptional regulator, AsnC family compare
Atu3480 -0.4 -3.0 hydroxymethylglutaryl-CoA lyase compare
Atu2766 -0.4 -3.8 NAD-glutamate dehydrogenase compare
Atu1021 -0.4 -0.9 outer membrane protein compare
Atu4410 -0.4 -1.9 periplasmic nitrate reductase, cytochrome c-type protein compare
Atu1321 -0.4 -1.7 hypothetical protein compare
Atu6114 -0.4 -1.3 hypothetical protein compare
Atu0322 -0.4 -2.5 enoyl CoA hydratase compare
Atu3478 -0.4 -2.4 3-methylcrotonoyl-CoA carboxylase beta subunit compare
Atu2795 -0.4 -2.4 cobalamin biosynthetic protein compare
Atu2270 -0.4 -0.7 ATP-dependent Clp protease, proteolytic subunit compare
Atu4874 -0.4 -2.2 hypothetical protein compare
Atu0269 -0.4 -1.8 exodeoxyribonuclease VII large subunit compare
Atu4484 -0.4 -1.7 hypothetical protein compare
Atu3505 -0.4 -2.9 3-hydroxyisobutyryl-CoA hydrolase compare
Atu3750 -0.4 -1.1 thiamine-phosphate pyrophosphorylase compare
Atu0346 -0.4 -1.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3010 -0.4 -2.5 hypothetical protein compare
Atu3515 -0.4 -1.5 hypothetical protein compare
Atu0153 -0.4 -1.9 transcriptional regulator, Fur family compare
Atu4890 -0.4 -1.0 IS426 transposase compare
Atu1468 -0.4 -2.6 hypothetical protein compare
Atu1005 -0.4 -1.7 hypothetical protein compare
Atu1457 -0.4 -1.5 hypothetical protein compare
Atu2245 -0.4 -2.9 Na+/Pi-cotransporter compare
Atu0690 -0.4 -0.6 hypothetical protein compare
Atu2810 -0.4 -3.1 cobalamin biosynthetic protein compare
Atu2620 -0.4 -0.8 hypothetical protein compare
Atu5451 -0.4 -0.7 hypothetical protein compare
Atu0029 -0.4 -2.2 S-adenosylhomocysteine hydrolase compare
Atu2306 -0.4 -1.6 methionine aminopeptidase compare
Atu3999 -0.4 -1.1 dithiobiotin synthetase compare
Atu1204 -0.4 -2.2 potassium uptake protein compare
Atu3033 -0.4 -2.4 hypothetical protein compare
Atu2658 -0.4 -2.4 GMP synthase - glutamine amidotransferase protein compare
Atu0946 -0.4 -2.0 dehydrogenase compare
Atu0876 -0.4 -0.9 superoxide dismutase compare
Atu0971 -0.4 -1.5 two component sensor kinase compare
Atu1993 -0.4 -2.2 tRNA/rRNA metyltransferase compare
Atu3485 -0.4 -2.5 short chain dehydrogenase compare
Atu2344 -0.4 -1.2 lactoylglutathione lyase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Ferulic Acid across organisms