Experiment set11IT053 for Agrobacterium fabrum C58

Compare to:

LB with Guaiacol 1.25 mM

200 most important genes:

  gene name fitness t score description  
Atu0434 -1.8 -3.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2125 -1.8 -2.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu3012 -1.7 -2.3 hypothetical protein compare
Atu0566 -1.6 -3.1 hypothetical protein compare
Atu0141 -1.5 -2.3 cytochrome O ubiquinol oxidase subunit I compare
Atu0184 -1.5 -3.7 glucokinase compare
Atu2439 -1.4 -2.4 hypothetical protein compare
Atu3730 -1.3 -2.1 hypothetical protein compare
Atu0142 -1.2 -2.2 cytochrome o ubiquinol oxidase subunit II compare
Atu0040 -1.2 -1.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2554 -1.2 -2.4 lysyl-tRNA synthetase compare
Atu2207 -1.2 -2.7 two component sensor kinase compare
Atu2286 -1.1 -2.3 hypothetical protein compare
Atu3121 -1.1 -1.6 cold shock protein compare
Atu2787 -1.0 -1.4 hypothetical protein compare
Atu0941 -0.9 -1.2 hypothetical protein compare
Atu3469 -0.9 -2.3 phosphoglyceromutase compare
Atu0912 -0.9 -1.7 Na+/H+ antiporter compare
Atu0051 -0.9 -3.9 two component sensor kinase compare
Atu1308 -0.9 -3.2 aspartate carbamoyl transferase catalytic subunit compare
Atu3008 -0.9 -1.0 hypothetical protein compare
Atu1619 -0.8 -3.2 protein-export membrane protein SECG compare
Atu0638 -0.8 -2.1 hypothetical protein compare
Atu8138 -0.8 -1.8 hypothetical protein compare
Atu2802 -0.8 -3.7 precorrin-8X methylmutase compare
Atu0030 -0.8 -1.7 phosphocarrier protein HPr compare
Atu2057 -0.8 -2.1 DNA helicase II compare
Atu0354 -0.8 -1.6 ferric uptake regulator compare
Atu0149 -0.8 -2.8 enoyl-(acyl-carrier-protein) reductase compare
Atu0050 -0.8 -3.7 two component response regulator compare
Atu3750 -0.8 -1.4 thiamine-phosphate pyrophosphorylase compare
Atu4616 -0.8 -1.5 dTDP-4-dehydrorhamnose reductase compare
Atu2831 -0.8 -3.7 glucose inhibited division protein A compare
Atu4888 -0.8 -3.4 hypothetical protein compare
Atu3798 -0.8 -3.3 TetR family transcriptional regulator compare
Atu0029 -0.8 -3.9 S-adenosylhomocysteine hydrolase compare
Atu2799 -0.8 -2.7 precorrin-6x reductase compare
Atu3999 -0.8 -2.1 dithiobiotin synthetase compare
Atu0401 -0.8 -3.5 fructokinase compare
Atu1439 -0.7 -1.7 hypothetical protein compare
Atu0422 -0.7 -0.8 ABC transporter, membrane spanning protein compare
Atu4072 -0.7 -1.4 nodulation protein N compare
Atu8168 -0.7 -1.8 hypothetical protein compare
Atu1891 -0.7 -2.5 cobalamin biosynthesis protein compare
Atu0400 -0.7 -2.7 orotate phosphoribosyltransferase compare
Atu0784 -0.7 -2.7 hypothetical protein compare
Atu2824 -0.7 -3.2 hypothetical protein compare
Atu0115 -0.7 -1.0 hypothetical protein compare
Atu1204 -0.7 -3.4 potassium uptake protein compare
Atu0039 -0.7 -1.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu2809 -0.7 -4.2 cobalamin biosynthesis protein compare
Atu2832 -0.7 -2.7 tRNA modification GTPase compare
Atu1836 -0.7 -1.6 hypothetical protein compare
Atu0525 -0.6 -2.9 transcriptional regulator, LuxR family compare
Atu1679 -0.6 -2.0 peptidyl prolyl cis-trans isomerase compare
Atu4317 -0.6 -2.2 TetR family transcriptional regulator compare
Atu1542 -0.6 -2.8 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu0836 -0.6 -1.4 Glutathione-S-transferase compare
Atu2798 -0.6 -2.7 precorrin-6y methyltransferase compare
Atu3496 -0.6 -2.5 hypothetical protein compare
Atu0565 -0.6 -1.6 hypothetical protein compare
Atu0999 -0.6 -3.8 magnesium transport protein compare
Atu2249 -0.6 -0.9 hypothetical protein compare
Atu4469 -0.6 -2.9 iron ABC transporter permease compare
Atu8202 -0.6 -2.6 hypothetical protein compare
Atu0601 -0.6 -4.5 oxidoreductase compare
Atu2633 -0.6 -1.1 RhtB family transporter compare
Atu4879 -0.6 -3.5 hypothetical protein compare
Atu4889 -0.6 -2.2 hypothetical protein compare
Atu0031 -0.6 -1.1 PTS system, IIA component compare
Atu4882 -0.6 -1.7 hypothetical protein compare
Atu0943 -0.6 -1.8 hypothetical protein compare
Atu3013 -0.6 -1.8 hypothetical protein compare
Atu2662 -0.6 -0.9 acetyltransferase compare
Atu0947 -0.6 -2.6 transcriptional regulator, AsnC family compare
Atu2796 -0.6 -3.4 precorrin-4 C11-methyltransferase compare
Atu3598 -0.6 -1.5 thiol:disulfide interchange protein compare
Atu0399 -0.6 -2.5 dihydroorotase compare
Atu0953 -0.6 -0.6 hypothetical protein compare
Atu0659 -0.6 -2.8 NTP pyrophosphohydrolase, MutT family compare
Atu0185 -0.6 -1.8 methylglyoxal synthase compare
Atu4161 -0.6 -1.1 hypothetical protein compare
Atu0298 -0.6 -2.8 orotidine 5 compare
Atu3394 -0.6 -2.5 iron ABC transporter ATPase compare
Atu2073 -0.6 -2.7 membrane protein compare
Atu0723 -0.5 -1.0 FAD dependent oxidoreductase compare
Atu2555 -0.5 -2.5 L-lysine 2,3-aminomutase compare
Atu0824 -0.5 -0.9 hypothetical protein compare
Atu2801 -0.5 -1.6 precorrin-2 C20 methyltransferase compare
Atu3579 -0.5 -2.4 lactoylglutathione lyase compare
Atu6098 -0.5 -0.7 transcriptional regulator, HTH family compare
Atu3688 -0.5 -1.3 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu0885 -0.5 -1.5 hypothetical protein compare
Atu4873 -0.5 -2.4 TetR family transcriptional regulator compare
Atu2293 -0.5 -2.0 hypothetical protein compare
Atu3023 -0.5 -3.8 sugar ABC transporter permease compare
Atu1019 -0.5 -2.0 hypothetical protein compare
Atu3018 -0.5 -2.2 hypothetical protein compare
Atu0038 -0.5 -1.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2795 -0.5 -3.3 cobalamin biosynthetic protein compare
Atu5501 -0.5 -1.8 hypothetical protein compare
Atu4468 -0.5 -3.3 iron transport ABC transporter permease compare
Atu3005 -0.5 -0.5 hypothetical protein compare
Atu0981 -0.5 -4.0 glutamate-ammonia-ligase adenylyltransferase compare
Atu2803 -0.5 -2.0 Cobalamin biosynthesis associated protein compare
Atu3022 -0.5 -3.5 sugar ABC transporter permease compare
Atu0535 -0.5 -2.0 hypothetical protein compare
Atu1475 -0.5 -1.2 hypothetical protein compare
Atu1752 -0.5 -1.6 hypothetical protein compare
Atu0013 -0.5 -2.2 NAD(P)H-flavin oxidoreductase compare
Atu4223 -0.5 -0.7 sarcosine oxidase delta subunit compare
Atu1874 -0.5 -1.7 RecA protein compare
Atu1678 -0.5 -2.7 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu3016 -0.5 -2.1 phosphoglyceromutase compare
Atu2237 -0.5 -2.4 cytochrome c1 compare
Atu3019 -0.5 -2.9 hypothetical protein compare
Atu1364 -0.5 -2.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1701 -0.5 -1.4 protein-L-isoaspartate O-methyltransferase compare
Atu4418 -0.5 -1.9 glutaryl-CoA dehydrogenase compare
Atu4876 -0.5 -3.9 oxidoreductase compare
Atu4890 -0.5 -1.1 IS426 transposase compare
Atu2590 -0.5 -2.8 hypothetical protein compare
Atu2692 -0.5 -2.1 intracellular septation protein compare
Atu1513 -0.5 -2.2 ABC excinuclease subunit A compare
Atu1705 -0.5 -2.2 SEC-independent protein translocase protein compare
Atu4540 -0.5 -1.4 protocatechuate 3,4-dioxygenase subunit beta compare
Atu2804 -0.5 -3.0 cobaltochelatase subunit compare
Atu4875 -0.5 -2.6 hypothetical protein compare
Atu1638 -0.5 -1.9 hypothetical protein compare
Atu2810 -0.5 -3.2 cobalamin biosynthetic protein compare
Atu0977 -0.5 -2.0 serine protease DO-like protease compare
Atu2585 -0.4 -2.5 hypothetical protein compare
Atu2790 -0.4 -0.9 3-isopropylmalate dehydratase, small subunit compare
Atu4893 -0.4 -2.1 hypothetical protein compare
Atu1739 -0.4 -2.2 permease compare
Atu4217 -0.4 -0.5 TetR family transcriptional regulator compare
Atu3024 -0.4 -3.4 sugar ABC transporter permease compare
Atu4670 -0.4 -2.7 hypothetical protein compare
Atu1344 -0.4 -1.0 hypothetical protein compare
Atu0331 -0.4 -1.2 sigma-54 modulation protein compare
Atu0971 -0.4 -1.8 two component sensor kinase compare
Atu0135 -0.4 -0.7 uracil phosphoribosyltransferase compare
Atu3327 -0.4 -2.0 succinoglycan exopolysaccharide synthesis protein compare
Atu0689 -0.4 -3.3 ribosomal large subunit pseudouridine synthase B compare
Atu4872 -0.4 -2.9 LysR family transcriptional regulator compare
Atu3712 -0.4 -0.6 hypothetical protein compare
Atu4395 -0.4 -2.6 hypothetical protein compare
Atu2162 -0.4 -2.3 periplasmic immunogenic protein compare
Atu8162 -0.4 -0.9 hypothetical protein compare
Atu8170 -0.4 -1.1 hypothetical protein compare
Atu4864 -0.4 -2.6 MarR family transcriptional regulator compare
Atu4200 -0.4 -1.3 hypothetical protein compare
Atu4068 -0.4 -1.0 sarcosine oxidase delta subunit compare
Atu2184 -0.4 -1.8 transcriptional regulator, AsnC family compare
Atu1163 -0.4 -1.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4391 -0.4 -0.8 nitric oxide reductase NorE protein compare
Atu4880 -0.4 -3.1 AraC family transcriptional regulator compare
Atu4561 -0.4 -2.4 hypothetical protein compare
Atu0503 -0.4 -3.2 enoyl-CoA hydratase compare
Atu8144 -0.4 -1.2 hypothetical protein compare
Atu3395 -0.4 -2.1 iron (III ABC transporter permease ABC transporter permease compare
Atu2808 -0.4 -2.3 cobyric acid synthase compare
Atu0524 -0.4 -2.3 transcriptional regulator, LuxR family compare
Atu3583 -0.4 -1.2 hypothetical protein compare
Atu4541 -0.4 -2.3 carboxymuconolactone decarboxylase compare
Atu2806 -0.4 -1.8 hypothetical protein compare
Atu8093 -0.4 -1.5 hypothetical protein compare
Atu3429 -0.4 -0.8 hypothetical protein compare
Atu0025 -0.4 -1.0 hypothetical protein compare
Atu0240 -0.4 -1.1 hypothetical protein compare
Atu2793 -0.4 -2.1 cobyrinic acid a,c-diamide synthase compare
Atu1449 -0.4 -1.7 potassium uptake protein compare
Atu3020 -0.4 -2.4 GntR family transcriptional regulator compare
Atu3963 -0.4 -2.4 GntR family transcriptional regulator compare
Atu1737 -0.4 -1.0 hypothetical protein compare
Atu2433 -0.4 -0.7 hypothetical protein compare
Atu1566 -0.4 -0.7 hypothetical protein compare
Atu1993 -0.4 -2.5 tRNA/rRNA metyltransferase compare
Atu3026 -0.4 -2.3 short chain dehydrogenase compare
Atu2640 -0.4 -1.7 hypothetical protein compare
Atu4881 -0.4 -2.3 hypothetical protein compare
Atu2807 -0.4 -2.1 cob(I)alamin adenosyltransferase compare
Atu4643 -0.4 -1.6 hypothetical protein compare
Atu4363 -0.4 -2.5 hypothetical protein compare
Atu0339 -0.4 -1.1 hypothetical protein compare
Atu1028 -0.4 -1.0 hypothetical protein compare
Atu3169 -0.4 -1.5 sorbitol/mannitol ABC transporter permease compare
Atu1336 -0.4 -1.3 hypothetical protein compare
Atu4143 -0.4 -1.6 hypothetical protein compare
Atu3291 -0.4 -1.3 Lpr family transcriptional regulator compare
Atu2042 -0.4 -2.0 short chain dehydrogenase compare
Atu6106 -0.4 -1.2 conserved hypothetical protein compare
Atu3443 -0.4 -1.4 hypothetical protein compare
Atu3593 -0.4 -2.7 hypothetical protein compare
Atu2124 -0.4 -1.6 transcriptional regulator, ArsR family compare
Atu2805 -0.4 -2.3 cobalamin synthesis protein compare
Atu2169 -0.4 -2.0 hypothetical protein compare
Atu0386 -0.4 -0.9 hypothetical protein compare
Atu2051 -0.4 -1.7 hypothetical protein compare
Atu0086 -0.4 -0.4 ribosome-binding factor A compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Guaiacol across organisms