Experiment set11IT049 for Agrobacterium fabrum C58

Compare to:

LB with Sodium Dodecyl Sulfate 0.2 mM

200 most important genes:

  gene name fitness t score description  
Atu4072 -5.7 -3.9 nodulation protein N compare
Atu0977 -5.7 -6.7 serine protease DO-like protease compare
Atu3202 -5.5 -22.8 RND multidrug efflux transporter compare
Atu0687 -5.4 -5.2 hypothetical protein compare
Atu2379 -5.3 -11.9 phosphomannomutase compare
Atu2722 -5.1 -11.3 porin compare
Atu3311 -5.1 -18.1 phosphomannose isomerase compare
Atu3353 -5.1 -14.3 mannose-1-phosphate guanylyltransferase compare
Atu2183 -5.1 -12.7 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4148 -4.6 -7.0 UDP-glucuronic acid epimerase compare
Atu1131 -4.5 -12.3 outer membrane protein compare
Atu2585 -4.5 -8.5 hypothetical protein compare
Atu2590 -4.4 -13.7 hypothetical protein compare
Atu3203 -4.4 -11.9 RND multidrug efflux membrane permease compare
Atu2591 -4.1 -10.8 glucosyltransferase compare
Atu2577 -4.0 -21.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu3727 -4.0 -7.9 hypothetical protein compare
Atu3795 -3.9 -20.5 AcrB/AcrD/AcrF family protein compare
Atu0388 -3.9 -13.9 two component sensor kinase compare
Atu2583 -3.9 -17.0 glycosyltransferase compare
Atu2584 -3.8 -6.4 hypothetical protein compare
Atu2582 -3.8 -9.6 UDP-glucose/GDP-mannose dehydrogenase compare
Atu3797 -3.7 -17.6 HlyD family secretion protein compare
Atu2592 -3.7 -9.4 hypothetical protein compare
Atu4149 -3.6 -14.8 UDP-glucose 6-dehydrogenase compare
Atu0050 -3.6 -8.2 two component response regulator compare
Atu3796 -3.5 -14.1 efflux protein compare
Atu2084 -3.0 -2.0 hypothetical protein compare
Atu0051 -2.8 -7.1 two component sensor kinase compare
Atu1175 -2.8 -3.2 hypothetical protein compare
Atu0972 -2.5 -5.1 lipA protein compare
Atu3763 -2.4 -2.7 hypothetical protein compare
Atu2710 -2.4 -8.9 hypothetical protein compare
Atu3469 -2.3 -4.8 phosphoglyceromutase compare
Atu0141 -2.2 -2.4 cytochrome O ubiquinol oxidase subunit I compare
Atu4615 -2.1 -12.2 glucose-1-phosphate thymidylyltransferase compare
Atu4477 -2.1 -8.6 TetR family transcriptional regulator compare
Atu4617 -2.1 -11.0 dTDP-D-glucose-4,6-dehydratase compare
Atu4317 -1.9 -3.5 TetR family transcriptional regulator compare
Atu4618 -1.9 -10.7 dTDP-rhamnose-3,5-epimerase compare
Atu0788 -1.9 -5.8 hypothetical protein compare
Atu3779 -1.8 -10.8 lytic murein transglycosylase compare
Atu1099 -1.8 -8.9 hypothetical protein compare
Atu4614 -1.8 -8.3 glycosyltransferase compare
Atu0031 -1.7 -2.4 PTS system, IIA component compare
Atu3008 -1.7 -1.5 hypothetical protein compare
Atu2614 -1.7 -5.0 hypothetical protein compare
Atu2439 -1.7 -1.9 hypothetical protein compare
Atu0971 -1.6 -4.9 two component sensor kinase compare
Atu2207 -1.6 -3.7 two component sensor kinase compare
Atu0331 -1.6 -3.5 sigma-54 modulation protein compare
Atu0784 -1.5 -3.6 hypothetical protein compare
Atu0142 -1.5 -2.8 cytochrome o ubiquinol oxidase subunit II compare
Atu4613 -1.5 -9.9 glycosyltransferase compare
Atu2555 -1.5 -4.7 L-lysine 2,3-aminomutase compare
Atu3750 -1.5 -3.0 thiamine-phosphate pyrophosphorylase compare
Atu2692 -1.5 -5.4 intracellular septation protein compare
Atu2616 -1.5 -7.1 hypothetical protein compare
Atu4610 -1.4 -6.9 sugar nucleotide epimerase/dehydratase compare
Atu1619 -1.4 -2.0 protein-export membrane protein SECG compare
Atu3012 -1.3 -1.9 hypothetical protein compare
Atu2554 -1.3 -2.7 lysyl-tRNA synthetase compare
Atu2728 -1.3 -5.0 beta (1-->2) glucan export ATP-binding protein compare
Atu2045 -1.2 -6.1 HFLK protein compare
Atu4616 -1.2 -1.5 dTDP-4-dehydrorhamnose reductase compare
Atu0486 -1.2 -5.2 dihydroorotate dehydrogenase compare
Atu2052 -1.2 -6.9 hypothetical protein compare
Atu1258 -1.2 -5.9 ATP-dependent Clp protease, proteolytic subunit compare
Atu8147 -1.2 -7.6 hypothetical protein compare
Atu0257 -1.2 -8.4 hypothetical protein compare
Atu0769 -1.2 -1.8 protoheme IX farnesyltransferase compare
Atu0298 -1.2 -5.5 orotidine 5 compare
Atu1030 -1.2 -1.3 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1844 -1.1 -3.2 Phosphoribosylformylglycinamidine synthetase compare
Atu0184 -1.1 -3.3 glucokinase compare
Atu1327 -1.1 -3.2 NADH-ubiquinone oxidoreductase compare
Atu1134 -1.1 -6.3 hypothetical protein compare
Atu1679 -1.1 -1.8 peptidyl prolyl cis-trans isomerase compare
Atu3486 -1.1 -1.8 DeoR family transcriptional regulator compare
Atu0400 -1.1 -3.4 orotate phosphoribosyltransferase compare
Atu2615 -1.1 -5.6 hypothetical protein compare
Atu3005 -1.1 -1.0 hypothetical protein compare
Atu0598 -1.1 -6.3 phosphogluconate dehydratase compare
Atu2770 -1.1 -5.8 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu4099 -1.1 -4.4 hypothetical protein compare
Atu1484 -1.1 -3.1 transcriptional regulator compare
Atu8138 -1.1 -2.1 hypothetical protein compare
Atu1254 -1.1 -2.0 transcriptional regulator, ArsR family compare
Atu1573 -1.1 -1.6 hypothetical protein compare
Atu0876 -1.0 -1.6 superoxide dismutase compare
Atu3578 -1.0 -4.1 glycerol-3-phosphate dehydrogenase compare
Atu1739 -1.0 -4.4 permease compare
Atu2766 -1.0 -9.0 NAD-glutamate dehydrogenase compare
Atu3697 -1.0 -4.2 ATP-dependent protease LA 2 compare
Atu4890 -1.0 -2.1 IS426 transposase compare
Atu1513 -1.0 -5.3 ABC excinuclease subunit A compare
Atu0659 -1.0 -4.6 NTP pyrophosphohydrolase, MutT family compare
Atu2682 -1.0 -3.9 hypothetical protein compare
Atu1028 -1.0 -1.9 hypothetical protein compare
Atu2456 -1.0 -4.2 lactoylglutathione lyase compare
Atu1495 -1.0 -2.5 hypothetical protein compare
Atu1204 -1.0 -3.7 potassium uptake protein compare
Atu3757 -1.0 -1.2 hypothetical protein compare
Atu1364 -0.9 -4.0 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4166 -0.9 -1.2 UDP-glucose 4-epimerase compare
Atu3910 -0.9 -3.2 LamB/YcsF family protein compare
Atu4055 -0.9 -4.2 endo-1,3-1,4-beta-glycanase compare
Atu5160 -0.9 -2.9 transcriptional regulator protein compare
Atu8162 -0.9 -1.8 hypothetical protein compare
Atu3608 -0.9 -4.7 hypothetical protein compare
Atu0501 -0.9 -6.8 acyl-CoA dehydrogenase compare
Atu4541 -0.9 -3.3 carboxymuconolactone decarboxylase compare
Atu0399 -0.9 -4.2 dihydroorotase compare
Atu3911 -0.9 -3.2 hypothetical protein compare
Atu1344 -0.9 -1.5 hypothetical protein compare
Atu1694 -0.9 -2.5 hypothetical protein compare
Atu1760 -0.9 -1.5 hypothetical protein compare
Atu2044 -0.9 -3.8 HFLC protein compare
Atu3014 -0.9 -1.9 hypothetical protein compare
Atu1683 -0.8 -1.5 hypothetical protein compare
Atu1019 -0.8 -3.1 hypothetical protein compare
Atu2633 -0.8 -1.4 RhtB family transporter compare
Atu0025 -0.8 -2.1 hypothetical protein compare
Atu1021 -0.8 -1.4 outer membrane protein compare
Atu1604 -0.8 -5.3 poly-beta-hydroxybutyrate synthase compare
Atu0594 -0.8 -5.8 alpha-glucosidase compare
Atu0895 -0.8 -2.5 ABC transporter, substrate binding protein compare
Atu3912 -0.8 -4.1 hypothetical protein compare
Atu8095 -0.8 -3.8 hypothetical protein compare
Atu1157 -0.8 -4.8 hypothetical protein compare
Atu1359 -0.8 -1.1 dnaK deletion suppressor protein compare
Atu1680 -0.8 -3.8 peptidyl prolyl cis-trans isomerase compare
Atu1793 -0.8 -4.7 phosphatidylcholine synthase compare
Atu3698 -0.8 -4.5 thioredoxin compare
Atu2746 -0.8 -1.3 hypothetical protein compare
Atu4468 -0.8 -3.9 iron transport ABC transporter permease compare
Atu3013 -0.8 -3.4 hypothetical protein compare
Atu2114 -0.8 -3.9 molecular chaperone, DnaJ family compare
Atu5125 -0.8 -3.3 GntR family transcriptional regulator compare
Atu2333 -0.8 -4.1 ATP-dependent RNA helicase compare
Atu0922 -0.7 -2.7 hypothetical protein compare
Atu3913 -0.7 -4.1 biotin carboxylase compare
Atu4469 -0.7 -3.0 iron ABC transporter permease compare
Atu3613 -0.7 -3.5 hypothetical protein compare
Atu1449 -0.7 -4.5 potassium uptake protein compare
Atu3739 -0.7 -2.6 phosphoglycerate kinase compare
Atu1874 -0.7 -2.4 RecA protein compare
Atu0638 -0.7 -1.4 hypothetical protein compare
Atu3963 -0.7 -3.4 GntR family transcriptional regulator compare
Atu8012 -0.7 -1.1 hypothetical protein compare
Atu0344 -0.7 -2.7 hypothetical protein compare
Atu1039 -0.7 -2.1 DNA repair protein RecO compare
Atu0593 -0.7 -4.8 ABC transporter, membrane spanning protein compare
Atu4470 -0.7 -3.1 iron ABC transporter ATPase compare
Atu4896 -0.7 -1.2 acetyltransferase compare
Atu1838 -0.7 -2.6 ABC transporter, substrate binding protein (amino acid) compare
Atu3909 -0.7 -5.1 hypothetical protein compare
Atu4481 -0.7 -2.4 LacI family transcriptional regulator compare
Atu0912 -0.7 -1.3 Na+/H+ antiporter compare
Atu1638 -0.7 -3.3 hypothetical protein compare
Atu0105 -0.7 -2.0 hypothetical protein compare
Atu2790 -0.7 -1.7 3-isopropylmalate dehydratase, small subunit compare
Atu0986 -0.7 -1.2 hypothetical protein compare
Atu2803 -0.7 -2.9 Cobalamin biosynthesis associated protein compare
Atu2057 -0.7 -1.8 DNA helicase II compare
Atu0755 -0.7 -1.9 hypothetical protein compare
Atu3019 -0.6 -4.1 hypothetical protein compare
Atu0488 -0.6 -2.0 hypothetical protein compare
Atu0434 -0.6 -1.6 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2662 -0.6 -1.0 acetyltransferase compare
Atu3755 -0.6 -3.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0939 -0.6 -2.2 PemI protein compare
Atu3792 -0.6 -3.8 L-asparagine permease compare
Atu0544 -0.6 -1.8 hypothetical protein compare
Atu2325 -0.6 -2.2 hypothetical protein compare
Atu4115 -0.6 -3.3 dipeptide ABC transporter permease compare
Atu4176 -0.6 -3.0 hypothetical protein compare
Atu1130 -0.6 -3.9 dehydrogenase compare
Atu0269 -0.6 -2.7 exodeoxyribonuclease VII large subunit compare
Atu0591 -0.6 -4.4 ABC transporter, substrate binding protein (alpha-glucoside) compare
Atu4462 -0.6 -3.9 transcriptional regulator compare
Atu2267 -0.6 -3.4 hypothetical protein compare
Atu3296 -0.6 -3.4 two component response regulator for C4-dicarboxylate transport compare
Atu4120 -0.6 -3.3 mandelate racemase compare
Atu3331 -0.6 -2.5 hypothetical protein compare
Atu2193 -0.6 -0.8 hypothetical protein compare
Atu0524 -0.6 -3.1 transcriptional regulator, LuxR family compare
Atu3603 -0.6 -1.8 two component response regulator compare
Atu2804 -0.6 -4.3 cobaltochelatase subunit compare
Atu8202 -0.6 -2.5 hypothetical protein compare
Atu1784 -0.6 -3.3 hypothetical protein compare
Atu2428 -0.6 -4.0 exopolysaccharide production protein PssB compare
Atu1225 -0.6 -1.1 hypothetical protein compare
Atu4880 -0.6 -4.2 AraC family transcriptional regulator compare
Atu2270 -0.6 -1.4 ATP-dependent Clp protease, proteolytic subunit compare
Atu2442 -0.6 -1.3 hypothetical protein compare
Atu3754 -0.6 -3.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0768 -0.6 -4.1 cytochrome-c oxidase chain I compare
Atu1466 -0.6 -1.4 hypothetical protein compare
Atu3467 -0.6 -1.9 hypothetical protein compare


Specific Phenotypes

For 18 genes in this experiment

For stress Sodium Dodecyl Sulfate in Agrobacterium fabrum C58

For stress Sodium Dodecyl Sulfate across organisms