Experiment set11IT049 for Agrobacterium fabrum C58

Compare to:

LB with Sodium Dodecyl Sulfate 0.2 mM

Group: stress
Media: LB + Sodium Dodecyl Sulfate (0.2 mM), pH=7
Culturing: Agro_ML11, 24-well plate, Aerobic, at 28 (C), shaken=200 rpm
By: Mitchell Thompson on 1/7/22
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 18 genes in this experiment

For stress Sodium Dodecyl Sulfate in Agrobacterium fabrum C58

For stress Sodium Dodecyl Sulfate across organisms

SEED Subsystems

Subsystem #Specific
Multidrug Resistance Efflux Pumps 3
Multidrug efflux pump in Campylobacter jejuni (CmeABC operon) 2
Glycerolipid and Glycerophospholipid Metabolism in Bacteria 1
Peptidoglycan Biosynthesis 1
Phosphate metabolism 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
phospholipid remodeling (phosphatidate, yeast) 2 1 1
palmitoleate biosynthesis III (cyanobacteria) 2 1 1
oleate biosynthesis III (cyanobacteria) 3 2 1
CDP-diacylglycerol biosynthesis II 4 4 1
CDP-diacylglycerol biosynthesis I 4 4 1
CDP-diacylglycerol biosynthesis III 5 4 1
phosphatidate biosynthesis (yeast) 5 3 1
phosphatidylglycerol biosynthesis I 6 6 1
phosphatidylglycerol biosynthesis II 6 6 1
superpathway of phospholipid biosynthesis III (E. coli) 12 10 2
superpathway of stearidonate biosynthesis (cyanobacteria) 6 2 1
palmitoyl ethanolamide biosynthesis 6 2 1
diacylglycerol and triacylglycerol biosynthesis 7 3 1
stigma estolide biosynthesis 7 2 1
anandamide biosynthesis II 8 2 1
anandamide biosynthesis I 12 3 1
superpathway of cardiolipin biosynthesis (bacteria) 13 10 1
superpathway of phospholipid biosynthesis II (plants) 28 12 2
plasmalogen biosynthesis I (aerobic) 16 1 1