Experiment set11IT046 for Agrobacterium fabrum C58

Compare to:

LB with p-Coumaric acid 0.5 mM

200 most important genes:

  gene name fitness t score description  
Atu0115 -2.0 -2.1 hypothetical protein compare
Atu3469 -1.8 -4.0 phosphoglyceromutase compare
Atu1446 -1.8 -1.8 two component response regulator compare
Atu0953 -1.7 -1.8 hypothetical protein compare
Atu3008 -1.6 -1.6 hypothetical protein compare
Atu0030 -1.5 -2.6 phosphocarrier protein HPr compare
Atu0040 -1.5 -2.0 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0421 -1.5 -2.1 ABC transporter, membrane spanning protein compare
Atu2684 -1.3 -2.5 hypothetical protein compare
Atu2125 -1.2 -1.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu3468 -1.2 -1.2 hypothetical protein compare
Atu0658 -1.1 -7.3 phosphate permease compare
Atu1810 -1.1 -1.9 hypothetical protein compare
Atu0184 -1.1 -3.1 glucokinase compare
Atu0331 -1.0 -2.3 sigma-54 modulation protein compare
Atu4882 -1.0 -2.6 hypothetical protein compare
Atu4635 -1.0 -4.4 hypothetical protein compare
Atu0051 -1.0 -4.8 two component sensor kinase compare
Atu0659 -0.9 -4.4 NTP pyrophosphohydrolase, MutT family compare
Atu8138 -0.9 -1.4 hypothetical protein compare
Atu0422 -0.9 -1.7 ABC transporter, membrane spanning protein compare
Atu0486 -0.9 -4.5 dihydroorotate dehydrogenase compare
Atu4884 -0.9 -3.9 hypothetical protein compare
Atu0912 -0.9 -1.7 Na+/H+ antiporter compare
Atu0601 -0.9 -5.4 oxidoreductase compare
Atu8054 -0.9 -1.0 hypothetical protein compare
Atu4144 -0.9 -1.3 hypothetical protein compare
Atu2633 -0.9 -1.3 RhtB family transporter compare
Atu0086 -0.9 -1.2 ribosome-binding factor A compare
Atu3763 -0.9 -1.3 hypothetical protein compare
Atu2439 -0.9 -1.5 hypothetical protein compare
Atu3739 -0.9 -1.7 phosphoglycerate kinase compare
Atu2831 -0.9 -4.4 glucose inhibited division protein A compare
Atu3012 -0.8 -1.3 hypothetical protein compare
Atu3015 -0.8 -3.8 hypothetical protein compare
Atu0999 -0.8 -4.9 magnesium transport protein compare
Atu2793 -0.8 -4.2 cobyrinic acid a,c-diamide synthase compare
Atu0943 -0.8 -2.4 hypothetical protein compare
Atu1417 -0.8 -5.2 enoyl-CoA hydratase compare
Atu1678 -0.8 -4.1 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu0784 -0.8 -2.6 hypothetical protein compare
Atu1110 -0.8 -2.7 cytosol aminopeptidase compare
Atu0876 -0.8 -1.5 superoxide dismutase compare
Atu1030 -0.8 -1.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4879 -0.8 -4.9 hypothetical protein compare
Atu2795 -0.8 -4.9 cobalamin biosynthetic protein compare
Atu0843 -0.7 -6.0 P type cation (metal) transporter, ATPase component compare
Atu2796 -0.7 -3.5 precorrin-4 C11-methyltransferase compare
Atu8202 -0.7 -3.2 hypothetical protein compare
Atu3016 -0.7 -3.7 phosphoglyceromutase compare
Atu3496 -0.7 -1.6 hypothetical protein compare
Atu3022 -0.7 -5.0 sugar ABC transporter permease compare
Atu4873 -0.7 -4.4 TetR family transcriptional regulator compare
Atu4773 -0.7 -1.7 two component response regulator compare
Atu2798 -0.7 -2.8 precorrin-6y methyltransferase compare
Atu0723 -0.7 -1.3 FAD dependent oxidoreductase compare
Atu4173 -0.7 -1.9 phosphoenolpyruvate-protein phosphotransferase compare
Atu2832 -0.7 -2.0 tRNA modification GTPase compare
Atu0638 -0.7 -2.4 hypothetical protein compare
Atu0368 -0.7 -3.0 tRNA pseudouridine synthase I compare
Atu2804 -0.7 -4.6 cobaltochelatase subunit compare
Atu2808 -0.7 -4.1 cobyric acid synthase compare
Atu4876 -0.7 -4.9 oxidoreductase compare
Atu3014 -0.7 -1.6 hypothetical protein compare
Atu0524 -0.7 -3.8 transcriptional regulator, LuxR family compare
Atu4527 -0.7 -1.5 hypothetical protein compare
Atu1634 -0.6 -1.3 hypothetical protein compare
Atu2245 -0.6 -4.8 Na+/Pi-cotransporter compare
Atu4875 -0.6 -3.4 hypothetical protein compare
Atu6114 -0.6 -2.4 hypothetical protein compare
Atu2800 -0.6 -1.8 precorrin-3B C17-methyltransferase compare
Atu1836 -0.6 -1.6 hypothetical protein compare
Atu2803 -0.6 -2.5 Cobalamin biosynthesis associated protein compare
Atu0566 -0.6 -1.8 hypothetical protein compare
Atu0525 -0.6 -3.1 transcriptional regulator, LuxR family compare
Atu1339 -0.6 -1.6 ribonuclease E compare
Atu3024 -0.6 -4.2 sugar ABC transporter permease compare
Atu2354 -0.6 -1.4 transcriptional regulator, MarR family compare
Atu3963 -0.6 -3.1 GntR family transcriptional regulator compare
Atu2073 -0.6 -3.0 membrane protein compare
Atu4880 -0.6 -4.4 AraC family transcriptional regulator compare
Atu0399 -0.6 -2.5 dihydroorotase compare
Atu0029 -0.6 -2.2 S-adenosylhomocysteine hydrolase compare
Atu3023 -0.6 -3.8 sugar ABC transporter permease compare
Atu0039 -0.6 -1.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu4161 -0.6 -1.2 hypothetical protein compare
Atu2124 -0.6 -2.0 transcriptional regulator, ArsR family compare
Atu3021 -0.6 -4.0 sugar ABC transporter ATPase compare
Atu0971 -0.6 -2.1 two component sensor kinase compare
Atu2805 -0.6 -2.6 cobalamin synthesis protein compare
Atu3020 -0.6 -3.7 GntR family transcriptional regulator compare
Atu4864 -0.6 -3.1 MarR family transcriptional regulator compare
Atu2810 -0.6 -3.8 cobalamin biosynthetic protein compare
Atu0050 -0.6 -2.8 two component response regulator compare
Atu3019 -0.6 -3.4 hypothetical protein compare
Atu1019 -0.6 -2.1 hypothetical protein compare
Atu4099 -0.6 -3.2 hypothetical protein compare
Atu2207 -0.6 -1.4 two component sensor kinase compare
Atu4877 -0.5 -4.0 short-chain dehydrogenase compare
Atu3794 -0.5 -3.8 FadR family transcriptional regulator compare
Atu2406 -0.5 -1.3 hypothetical protein compare
Atu1495 -0.5 -1.8 hypothetical protein compare
Atu4872 -0.5 -3.8 LysR family transcriptional regulator compare
Atu8093 -0.5 -3.2 hypothetical protein compare
Atu3510 -0.5 -1.4 amidohydrolase compare
Atu4616 -0.5 -1.1 dTDP-4-dehydrorhamnose reductase compare
Atu4889 -0.5 -2.5 hypothetical protein compare
Atu0031 -0.5 -1.0 PTS system, IIA component compare
Atu1364 -0.5 -2.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0434 -0.5 -1.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1359 -0.5 -0.7 dnaK deletion suppressor protein compare
Atu3018 -0.5 -2.4 hypothetical protein compare
Atu0888 -0.5 -2.6 transcriptional regulator, MerR family compare
Atu4166 -0.5 -1.3 UDP-glucose 4-epimerase compare
Atu1308 -0.5 -2.8 aspartate carbamoyl transferase catalytic subunit compare
Atu0298 -0.5 -2.3 orotidine 5 compare
Atu2801 -0.5 -2.3 precorrin-2 C20 methyltransferase compare
Atu2585 -0.5 -2.8 hypothetical protein compare
Atu2057 -0.5 -1.3 DNA helicase II compare
Atu5471 -0.5 -1.3 hypothetical protein compare
Atu3476 -0.5 -2.3 AsnC family transcriptional regulator compare
Atu4418 -0.5 -2.1 glutaryl-CoA dehydrogenase compare
Atu4068 -0.5 -1.3 sarcosine oxidase delta subunit compare
Atu2809 -0.5 -3.3 cobalamin biosynthesis protein compare
Atu1513 -0.5 -2.8 ABC excinuclease subunit A compare
Atu2692 -0.5 -1.6 intracellular septation protein compare
Atu1204 -0.5 -2.6 potassium uptake protein compare
Atu3750 -0.5 -1.1 thiamine-phosphate pyrophosphorylase compare
Atu1685 -0.5 -0.8 hypothetical protein compare
Atu3505 -0.5 -2.6 3-hydroxyisobutyryl-CoA hydrolase compare
Atu0941 -0.5 -0.7 hypothetical protein compare
Atu3448 -0.5 -2.0 dibenzothiophene desulfurization protein B compare
Atu0598 -0.5 -2.7 phosphogluconate dehydratase compare
Atu3910 -0.5 -2.4 LamB/YcsF family protein compare
Atu2802 -0.5 -2.5 precorrin-8X methylmutase compare
Atu3030 -0.5 -2.5 hypothetical protein compare
Atu4329 -0.5 -2.4 polysaccharide export protein compare
Atu0885 -0.5 -1.8 hypothetical protein compare
Atu1484 -0.5 -1.4 transcriptional regulator compare
Atu0997 -0.5 -1.9 hypothetical protein compare
Atu3593 -0.5 -2.3 hypothetical protein compare
Atu4890 -0.5 -1.2 IS426 transposase compare
Atu1846 -0.5 -1.1 hypothetical protein compare
Atu1677 -0.5 -1.9 queuine tRNA-ribosyltransferase compare
Atu1847 -0.5 -1.0 hypothetical protein compare
Atu1729 -0.5 -2.6 putative molybdenum cofactor biosynthesis protein compare
Atu2799 -0.5 -2.0 precorrin-6x reductase compare
Atu1490 -0.5 -1.4 arsenate reductase compare
Atu4153 -0.5 -2.8 aldehyde dehydrogenase compare
Atu2620 -0.5 -0.9 hypothetical protein compare
Atu0746 -0.4 -1.3 hypothetical protein compare
Atu1480 -0.4 -1.6 hypothetical protein compare
Atu1619 -0.4 -1.8 protein-export membrane protein SECG compare
Atu1535 -0.4 -0.9 cytochrome c oxidase, FixQ chain compare
Atu2555 -0.4 -1.9 L-lysine 2,3-aminomutase compare
Atu3033 -0.4 -2.3 hypothetical protein compare
Atu3013 -0.4 -1.9 hypothetical protein compare
Atu4888 -0.4 -2.2 hypothetical protein compare
Atu0153 -0.4 -1.8 transcriptional regulator, Fur family compare
Atu1759 -0.4 -3.1 L-serine dehydratase compare
Atu2068 -0.4 -1.5 hypothetical protein compare
Atu1225 -0.4 -0.7 hypothetical protein compare
Atu4053 -0.4 -1.0 succinoglycan biosynthesis protein compare
Atu4468 -0.4 -2.7 iron transport ABC transporter permease compare
Atu0361 -0.4 -1.0 transcriptional regulator compare
Atu2740 -0.4 -1.9 transcriptional regulator, GntR family compare
Atu4469 -0.4 -1.4 iron ABC transporter permease compare
Atu1804 -0.4 -2.7 hypothetical protein compare
Atu1850 -0.4 -1.8 phosphoribosylformylglycinamidine synthetase II compare
Atu8019 -0.4 -2.0 hypothetical protein compare
Atu1354 -0.4 -0.7 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2452 -0.4 -1.7 hypothetical protein compare
Atu3025 -0.4 -3.5 oligo alginate lyase compare
Atu2192 -0.4 -0.8 hypothetical protein compare
Atu4893 -0.4 -1.7 hypothetical protein compare
Atu1891 -0.4 -1.5 cobalamin biosynthesis protein compare
Atu2146 -0.4 -1.9 hypothetical protein compare
Atu0602 -0.4 -2.7 glutamine synthetase compare
Atu0142 -0.4 -1.0 cytochrome o ubiquinol oxidase subunit II compare
Atu1140 -0.4 -1.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu8177 -0.4 -1.9 hypothetical protein compare
Atu0773 -0.4 -2.2 surfeit 1 compare
Atu2766 -0.4 -3.6 NAD-glutamate dehydrogenase compare
Atu0977 -0.4 -2.0 serine protease DO-like protease compare
Atu0419 -0.4 -1.0 two component sensor kinase compare
Atu3395 -0.4 -2.1 iron (III ABC transporter permease ABC transporter permease compare
Atu1439 -0.4 -1.1 hypothetical protein compare
Atu8052 -0.4 -0.9 hypothetical protein compare
Atu8082 -0.4 -1.2 hypothetical protein compare
Atu2382 -0.4 -1.7 hypothetical protein compare
Atu4881 -0.4 -2.2 hypothetical protein compare
Atu1752 -0.4 -2.5 hypothetical protein compare
Atu1637 -0.4 -2.0 hypothetical protein compare
Atu2442 -0.4 -1.3 hypothetical protein compare
Atu3029 -0.4 -2.7 glucarate dehydratase compare
Atu3466 -0.4 -1.0 ArsR family transcriptional regulator compare
Atu0641 -0.4 -1.7 hypothetical protein compare
Atu0496 -0.4 -1.1 hypothetical protein compare
Atu6036 -0.4 -0.7 entry-exclusion protein compare
Atu3674 -0.4 -1.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress p-Coumaric acid across organisms