Experiment set11IT045 for Agrobacterium fabrum C58

Compare to:

LB with p-Coumaric acid 0.5 mM

200 most important genes:

  gene name fitness t score description  
Atu3730 -3.5 -3.1 hypothetical protein compare
Atu2125 -2.8 -3.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu0422 -2.0 -3.6 ABC transporter, membrane spanning protein compare
Atu0030 -2.0 -2.8 phosphocarrier protein HPr compare
Atu2057 -1.9 -3.5 DNA helicase II compare
Atu1030 -1.7 -2.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0039 -1.5 -2.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu0184 -1.5 -3.6 glucokinase compare
Atu3469 -1.3 -2.9 phosphoglyceromutase compare
Atu4217 -1.3 -1.5 TetR family transcriptional regulator compare
Atu1810 -1.3 -2.0 hypothetical protein compare
Atu0419 -1.2 -1.9 two component sensor kinase compare
Atu2633 -1.2 -2.8 RhtB family transporter compare
Atu1223 -1.1 -1.9 hypothetical protein compare
Atu2798 -1.1 -4.2 precorrin-6y methyltransferase compare
Atu0141 -1.1 -1.5 cytochrome O ubiquinol oxidase subunit I compare
Atu2793 -1.1 -4.0 cobyrinic acid a,c-diamide synthase compare
Atu2799 -1.0 -4.1 precorrin-6x reductase compare
Atu0784 -1.0 -1.7 hypothetical protein compare
Atu4173 -1.0 -2.3 phosphoenolpyruvate-protein phosphotransferase compare
Atu2803 -0.9 -3.5 Cobalamin biosynthesis associated protein compare
Atu0941 -0.9 -1.1 hypothetical protein compare
Atu2207 -0.9 -2.7 two component sensor kinase compare
Atu2800 -0.9 -3.0 precorrin-3B C17-methyltransferase compare
Atu0843 -0.9 -7.4 P type cation (metal) transporter, ATPase component compare
Atu5430 -0.9 -1.5 hypothetical protein compare
Atu0185 -0.9 -2.0 methylglyoxal synthase compare
Atu2640 -0.9 -3.3 hypothetical protein compare
Atu0025 -0.9 -1.6 hypothetical protein compare
Atu6098 -0.9 -1.0 transcriptional regulator, HTH family compare
Atu0999 -0.9 -4.3 magnesium transport protein compare
Atu0659 -0.8 -3.2 NTP pyrophosphohydrolase, MutT family compare
Atu0051 -0.8 -3.6 two component sensor kinase compare
Atu0658 -0.8 -5.4 phosphate permease compare
Atu0544 -0.8 -1.2 hypothetical protein compare
Atu1470 -0.8 -1.2 Camphor resistance protein compare
Atu1475 -0.8 -2.3 hypothetical protein compare
Atu0486 -0.8 -3.8 dihydroorotate dehydrogenase compare
Atu3011 -0.8 -2.1 ArsR family transcriptional regulator compare
Atu0986 -0.8 -1.3 hypothetical protein compare
Atu0690 -0.8 -1.9 hypothetical protein compare
Atu3733 -0.8 -2.1 hypothetical protein compare
Atu0601 -0.8 -4.5 oxidoreductase compare
Atu4884 -0.8 -2.9 hypothetical protein compare
Atu2831 -0.8 -3.8 glucose inhibited division protein A compare
Atu8138 -0.8 -1.4 hypothetical protein compare
Atu3739 -0.8 -2.2 phosphoglycerate kinase compare
Atu3014 -0.7 -2.0 hypothetical protein compare
Atu0225 -0.7 -1.0 hypothetical protein compare
Atu3910 -0.7 -3.1 LamB/YcsF family protein compare
Atu3023 -0.7 -4.9 sugar ABC transporter permease compare
Atu4875 -0.7 -3.3 hypothetical protein compare
Atu3016 -0.7 -3.2 phosphoglyceromutase compare
Atu2797 -0.7 -2.4 cobalamin biosynthesis protein compare
Atu3019 -0.7 -4.6 hypothetical protein compare
Atu3999 -0.7 -2.0 dithiobiotin synthetase compare
Atu0912 -0.7 -0.9 Na+/H+ antiporter compare
Atu0888 -0.7 -4.1 transcriptional regulator, MerR family compare
Atu0977 -0.7 -2.8 serine protease DO-like protease compare
Atu1701 -0.7 -1.6 protein-L-isoaspartate O-methyltransferase compare
Atu2804 -0.7 -5.0 cobaltochelatase subunit compare
Atu4879 -0.7 -4.0 hypothetical protein compare
Atu8202 -0.7 -2.6 hypothetical protein compare
Atu0836 -0.7 -1.7 Glutathione-S-transferase compare
Atu4888 -0.7 -2.3 hypothetical protein compare
Atu1891 -0.7 -2.2 cobalamin biosynthesis protein compare
Atu4890 -0.7 -1.4 IS426 transposase compare
Atu0050 -0.7 -3.2 two component response regulator compare
Atu0434 -0.7 -1.0 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2052 -0.7 -3.9 hypothetical protein compare
Atu2728 -0.6 -2.7 beta (1-->2) glucan export ATP-binding protein compare
Atu2620 -0.6 -1.1 hypothetical protein compare
Atu2809 -0.6 -4.0 cobalamin biosynthesis protein compare
Atu4773 -0.6 -0.9 two component response regulator compare
Atu1542 -0.6 -3.2 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1140 -0.6 -2.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0399 -0.6 -2.5 dihydroorotase compare
Atu3467 -0.6 -2.1 hypothetical protein compare
Atu0809 -0.6 -1.2 hypothetical protein compare
Atu3018 -0.6 -2.4 hypothetical protein compare
Atu2245 -0.6 -5.1 Na+/Pi-cotransporter compare
Atu2237 -0.6 -2.5 cytochrome c1 compare
Atu4877 -0.6 -4.1 short-chain dehydrogenase compare
Atu1739 -0.6 -2.9 permease compare
Atu2239 -0.6 -1.8 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu3028 -0.6 -4.2 hypothetical protein compare
Atu2073 -0.6 -3.1 membrane protein compare
Atu5451 -0.6 -1.1 hypothetical protein compare
Atu1634 -0.6 -1.4 hypothetical protein compare
Atu4317 -0.6 -2.0 TetR family transcriptional regulator compare
Atu1513 -0.6 -3.2 ABC excinuclease subunit A compare
Atu0368 -0.6 -2.8 tRNA pseudouridine synthase I compare
Atu1850 -0.6 -1.6 phosphoribosylformylglycinamidine synthetase II compare
Atu1619 -0.6 -2.2 protein-export membrane protein SECG compare
Atu1680 -0.6 -3.0 peptidyl prolyl cis-trans isomerase compare
Atu0331 -0.6 -1.1 sigma-54 modulation protein compare
Atu2352 -0.6 -1.6 hypothetical protein compare
Atu0812 -0.6 -1.4 hypothetical protein compare
Atu2634 -0.6 -1.2 hypothetical protein compare
Atu4635 -0.6 -2.9 hypothetical protein compare
Atu3021 -0.6 -3.0 sugar ABC transporter ATPase compare
Atu1364 -0.6 -2.2 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0501 -0.5 -4.2 acyl-CoA dehydrogenase compare
Atu4873 -0.5 -3.1 TetR family transcriptional regulator compare
Atu0602 -0.5 -3.5 glutamine synthetase compare
Atu4137 -0.5 -1.7 hypothetical protein compare
Atu2796 -0.5 -3.5 precorrin-4 C11-methyltransferase compare
Atu2808 -0.5 -3.5 cobyric acid synthase compare
Atu3020 -0.5 -3.3 GntR family transcriptional regulator compare
Atu2805 -0.5 -2.6 cobalamin synthesis protein compare
Atu3013 -0.5 -1.8 hypothetical protein compare
Atu1685 -0.5 -0.8 hypothetical protein compare
Atu3022 -0.5 -3.5 sugar ABC transporter permease compare
Atu3015 -0.5 -2.5 hypothetical protein compare
Atu1417 -0.5 -2.6 enoyl-CoA hydratase compare
Atu1327 -0.5 -2.0 NADH-ubiquinone oxidoreductase compare
Atu2344 -0.5 -1.8 lactoylglutathione lyase compare
Atu4889 -0.5 -2.3 hypothetical protein compare
Atu3755 -0.5 -2.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2555 -0.5 -1.6 L-lysine 2,3-aminomutase compare
Atu8029 -0.5 -1.1 hypothetical protein compare
Atu1463 -0.5 -2.3 glycine cleavage system component H compare
Atu3001 -0.5 -0.7 hypothetical protein compare
Atu2072 -0.5 -2.8 ribosomal protein L11 methyltransferase compare
Atu0119 -0.5 -0.9 hypothetical protein compare
Atu5517 -0.5 -1.7 hypothetical protein compare
Atu1469 -0.5 -1.0 hypothetical protein compare
Atu8165 -0.5 -1.8 hypothetical protein compare
Atu4743 -0.5 -2.9 LacI family transcriptional regulator compare
Atu4887 -0.5 -2.1 hypothetical protein compare
Atu2802 -0.5 -2.4 precorrin-8X methylmutase compare
Atu3024 -0.5 -3.5 sugar ABC transporter permease compare
Atu0421 -0.5 -0.9 ABC transporter, membrane spanning protein compare
Atu3791 -0.5 -2.6 L-asparaginase compare
Atu2298 -0.5 -2.2 hypothetical protein compare
Atu4876 -0.5 -3.6 oxidoreductase compare
Atu1241 -0.5 -1.4 hypothetical protein compare
Atu1759 -0.5 -3.3 L-serine dehydratase compare
Atu1677 -0.5 -1.9 queuine tRNA-ribosyltransferase compare
Atu3026 -0.5 -2.8 short chain dehydrogenase compare
Atu2439 -0.5 -0.9 hypothetical protein compare
Atu4643 -0.5 -1.9 hypothetical protein compare
Atu5010 -0.5 -2.0 hypothetical protein compare
Atu4418 -0.5 -2.3 glutaryl-CoA dehydrogenase compare
Atu3345 -0.5 -1.6 6-pyruvoyl tetrahydrobiopterin synthase compare
Atu2824 -0.5 -2.2 hypothetical protein compare
Atu4072 -0.5 -0.9 nodulation protein N compare
Atu2067 -0.5 -0.5 hypothetical protein compare
Atu2317 -0.5 -1.6 hypothetical protein compare
Atu4872 -0.5 -2.7 LysR family transcriptional regulator compare
Atu0566 -0.5 -1.3 hypothetical protein compare
Atu4469 -0.5 -1.9 iron ABC transporter permease compare
Atu5157 -0.5 -1.3 hypothetical protein compare
Atu0142 -0.4 -1.2 cytochrome o ubiquinol oxidase subunit II compare
Atu2325 -0.4 -2.4 hypothetical protein compare
Atu1878 -0.4 -1.5 hypothetical protein compare
Atu8012 -0.4 -1.1 hypothetical protein compare
Atu3010 -0.4 -2.5 hypothetical protein compare
Atu4880 -0.4 -2.7 AraC family transcriptional regulator compare
Atu0886 -0.4 -1.0 hypothetical protein compare
Atu2810 -0.4 -3.5 cobalamin biosynthetic protein compare
Atu1836 -0.4 -1.1 hypothetical protein compare
Atu0981 -0.4 -3.0 glutamate-ammonia-ligase adenylyltransferase compare
Atu3448 -0.4 -2.1 dibenzothiophene desulfurization protein B compare
Atu4067 -0.4 -2.6 hypothetical protein compare
Atu0520 -0.4 -2.1 chemotaxis receiver protein compare
Atu4881 -0.4 -2.2 hypothetical protein compare
Atu0647 -0.4 -2.1 phosphoribosylamine--glycine ligase compare
Atu2832 -0.4 -1.8 tRNA modification GTPase compare
Atu1683 -0.4 -1.1 hypothetical protein compare
Atu3162 -0.4 -2.9 LacI family transcriptional regulator compare
Atu1679 -0.4 -1.1 peptidyl prolyl cis-trans isomerase compare
Atu2590 -0.4 -2.9 hypothetical protein compare
Atu0269 -0.4 -1.5 exodeoxyribonuclease VII large subunit compare
Atu1801 -0.4 -1.3 hypothetical protein compare
Atu0400 -0.4 -1.6 orotate phosphoribosyltransferase compare
Atu1204 -0.4 -1.8 potassium uptake protein compare
Atu5160 -0.4 -1.8 transcriptional regulator protein compare
Atu3468 -0.4 -0.5 hypothetical protein compare
Atu3750 -0.4 -1.1 thiamine-phosphate pyrophosphorylase compare
Atu2801 -0.4 -1.4 precorrin-2 C20 methyltransferase compare
Atu0230 -0.4 -1.0 hypothetical protein compare
Atu3740 -0.4 -2.4 fructose bisphosphate aldolase compare
Atu1752 -0.4 -2.0 hypothetical protein compare
Atu1518 -0.4 -1.6 transcriptional regulator, Fur family compare
Atu1123 -0.4 -2.0 hypothetical protein compare
Atu1026 -0.4 -1.3 hypothetical protein compare
Atu0947 -0.4 -2.2 transcriptional regulator, AsnC family compare
Atu2123 -0.4 -2.3 methylenetetrahydrofolate reductase compare
Atu2795 -0.4 -1.9 cobalamin biosynthetic protein compare
Atu2807 -0.4 -1.7 cob(I)alamin adenosyltransferase compare
Atu3480 -0.4 -1.9 hydroxymethylglutaryl-CoA lyase compare
Atu2746 -0.4 -1.4 hypothetical protein compare
Atu2684 -0.4 -0.7 hypothetical protein compare
Atu0771 -0.4 -2.1 cytochrome c oxidase subunit III compare
Atu2761 -0.4 -1.3 exodeoxyribonuclease III compare
Atu2407 -0.4 -0.9 urease gamma subunit compare
Atu3025 -0.4 -3.1 oligo alginate lyase compare
Atu1074 -0.4 -2.6 NAD/NADP dependent oxidoreductase compare
Atu0503 -0.4 -3.1 enoyl-CoA hydratase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress p-Coumaric acid across organisms