Experiment set11IT044 for Agrobacterium fabrum C58

Compare to:

LB with p-Coumaric acid 1.25 mM

200 most important genes:

  gene name fitness t score description  
Atu0912 -2.3 -2.8 Na+/H+ antiporter compare
Atu3469 -1.8 -4.2 phosphoglyceromutase compare
Atu0421 -1.7 -2.3 ABC transporter, membrane spanning protein compare
Atu0723 -1.6 -2.3 FAD dependent oxidoreductase compare
Atu0115 -1.4 -1.7 hypothetical protein compare
Atu0999 -1.3 -7.4 magnesium transport protein compare
Atu0184 -1.2 -2.2 glucokinase compare
Atu4072 -1.2 -1.6 nodulation protein N compare
Atu0030 -1.2 -2.2 phosphocarrier protein HPr compare
Atu0422 -1.2 -2.8 ABC transporter, membrane spanning protein compare
Atu0784 -1.2 -3.9 hypothetical protein compare
Atu3014 -1.2 -2.0 hypothetical protein compare
Atu2125 -1.1 -2.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu0434 -1.1 -2.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0142 -1.1 -1.9 cytochrome o ubiquinol oxidase subunit II compare
Atu1439 -1.0 -1.8 hypothetical protein compare
Atu4317 -1.0 -3.3 TetR family transcriptional regulator compare
Atu2439 -1.0 -1.4 hypothetical protein compare
Atu1810 -1.0 -1.7 hypothetical protein compare
Atu3012 -1.0 -1.3 hypothetical protein compare
Atu4884 -0.9 -3.2 hypothetical protein compare
Atu0051 -0.9 -4.7 two component sensor kinase compare
Atu0399 -0.9 -3.9 dihydroorotase compare
Atu4888 -0.9 -4.2 hypothetical protein compare
Atu2554 -0.9 -2.1 lysyl-tRNA synthetase compare
Atu1417 -0.9 -5.3 enoyl-CoA hydratase compare
Atu1760 -0.9 -1.5 hypothetical protein compare
Atu2633 -0.9 -2.4 RhtB family transporter compare
Atu0658 -0.9 -5.4 phosphate permease compare
Atu0368 -0.9 -4.3 tRNA pseudouridine synthase I compare
Atu4887 -0.9 -3.4 hypothetical protein compare
Atu3750 -0.9 -2.3 thiamine-phosphate pyrophosphorylase compare
Atu4879 -0.8 -4.5 hypothetical protein compare
Atu2795 -0.8 -4.2 cobalamin biosynthetic protein compare
Atu3008 -0.8 -0.9 hypothetical protein compare
Atu3730 -0.8 -1.6 hypothetical protein compare
Atu2807 -0.8 -5.1 cob(I)alamin adenosyltransferase compare
Atu4875 -0.8 -4.4 hypothetical protein compare
Atu2793 -0.8 -4.2 cobyrinic acid a,c-diamide synthase compare
Atu2809 -0.8 -4.9 cobalamin biosynthesis protein compare
Atu0331 -0.8 -1.6 sigma-54 modulation protein compare
Atu1446 -0.8 -1.5 two component response regulator compare
Atu4773 -0.8 -1.7 two component response regulator compare
Atu1679 -0.8 -2.1 peptidyl prolyl cis-trans isomerase compare
Atu0298 -0.8 -3.8 orotidine 5 compare
Atu0400 -0.8 -2.4 orotate phosphoribosyltransferase compare
Atu1364 -0.8 -3.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3019 -0.8 -4.1 hypothetical protein compare
Atu4882 -0.7 -2.2 hypothetical protein compare
Atu0601 -0.7 -5.1 oxidoreductase compare
Atu0119 -0.7 -1.2 hypothetical protein compare
Atu2801 -0.7 -2.9 precorrin-2 C20 methyltransferase compare
Atu3022 -0.7 -4.5 sugar ABC transporter permease compare
Atu2662 -0.7 -0.8 acetyltransferase compare
Atu3013 -0.7 -3.3 hypothetical protein compare
Atu4053 -0.7 -1.4 succinoglycan biosynthesis protein compare
Atu3739 -0.7 -1.7 phosphoglycerate kinase compare
Atu3023 -0.7 -4.8 sugar ABC transporter permease compare
Atu4873 -0.7 -3.2 TetR family transcriptional regulator compare
Atu0843 -0.7 -6.1 P type cation (metal) transporter, ATPase component compare
Atu3020 -0.7 -3.8 GntR family transcriptional regulator compare
Atu0895 -0.7 -1.8 ABC transporter, substrate binding protein compare
Atu1052 -0.7 -2.4 hypothetical protein compare
Atu2192 -0.7 -1.3 hypothetical protein compare
Atu2555 -0.7 -2.0 L-lysine 2,3-aminomutase compare
Atu1570 -0.7 -0.8 hypothetical protein compare
Atu8093 -0.7 -4.0 hypothetical protein compare
Atu6045 -0.7 -1.7 replication protein C compare
Atu3010 -0.7 -3.7 hypothetical protein compare
Atu6036 -0.7 -1.2 entry-exclusion protein compare
Atu2800 -0.7 -1.9 precorrin-3B C17-methyltransferase compare
Atu2057 -0.6 -1.8 DNA helicase II compare
Atu1308 -0.6 -2.9 aspartate carbamoyl transferase catalytic subunit compare
Atu3264 -0.6 -3.5 IclR family transcriptional regulator compare
Atu4217 -0.6 -1.2 TetR family transcriptional regulator compare
Atu0486 -0.6 -3.1 dihydroorotate dehydrogenase compare
Atu0659 -0.6 -2.8 NTP pyrophosphohydrolase, MutT family compare
Atu0525 -0.6 -2.0 transcriptional regulator, LuxR family compare
Atu3021 -0.6 -4.5 sugar ABC transporter ATPase compare
Atu1030 -0.6 -1.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu5164 -0.6 -0.9 type IV secretion protein AvhB3 compare
Atu2832 -0.6 -2.3 tRNA modification GTPase compare
Atu0947 -0.6 -2.4 transcriptional regulator, AsnC family compare
Atu4099 -0.6 -3.6 hypothetical protein compare
Atu4328 -0.6 -2.3 hypothetical protein compare
Atu2831 -0.6 -3.3 glucose inhibited division protein A compare
Atu1140 -0.6 -3.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu4877 -0.6 -3.9 short-chain dehydrogenase compare
Atu8177 -0.6 -2.7 hypothetical protein compare
Atu0824 -0.6 -1.0 hypothetical protein compare
Atu4872 -0.6 -4.3 LysR family transcriptional regulator compare
Atu0520 -0.6 -2.2 chemotaxis receiver protein compare
Atu4881 -0.6 -2.8 hypothetical protein compare
Atu8202 -0.6 -2.1 hypothetical protein compare
Atu4876 -0.6 -4.6 oxidoreductase compare
Atu2207 -0.6 -2.0 two component sensor kinase compare
Atu0322 -0.6 -3.5 enoyl CoA hydratase compare
Atu1714 -0.6 -1.2 exonuclease III compare
Atu2808 -0.6 -3.9 cobyric acid synthase compare
Atu2796 -0.6 -3.8 precorrin-4 C11-methyltransferase compare
Atu3018 -0.6 -2.1 hypothetical protein compare
Atu2799 -0.6 -2.7 precorrin-6x reductase compare
Atu2805 -0.6 -2.4 cobalamin synthesis protein compare
Atu0040 -0.6 -0.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4890 -0.6 -1.3 IS426 transposase compare
Atu3727 -0.6 -1.7 hypothetical protein compare
Atu1513 -0.6 -3.2 ABC excinuclease subunit A compare
Atu3755 -0.6 -2.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3028 -0.5 -3.3 hypothetical protein compare
Atu3911 -0.5 -1.8 hypothetical protein compare
Atu4541 -0.5 -2.4 carboxymuconolactone decarboxylase compare
Atu0153 -0.5 -2.7 transcriptional regulator, Fur family compare
Atu0206 -0.5 -1.4 hypothetical protein compare
Atu2803 -0.5 -2.5 Cobalamin biosynthesis associated protein compare
Atu4223 -0.5 -1.3 sarcosine oxidase delta subunit compare
Atu3467 -0.5 -1.9 hypothetical protein compare
Atu2617 -0.5 -2.2 chemotaxis protein compare
Atu2052 -0.5 -3.2 hypothetical protein compare
Atu3011 -0.5 -1.4 ArsR family transcriptional regulator compare
Atu0141 -0.5 -1.1 cytochrome O ubiquinol oxidase subunit I compare
Atu0647 -0.5 -2.1 phosphoribosylamine--glycine ligase compare
Atu1204 -0.5 -2.9 potassium uptake protein compare
Atu2692 -0.5 -2.4 intracellular septation protein compare
Atu0038 -0.5 -2.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1307 -0.5 -2.1 dihydroorotase compare
Atu1677 -0.5 -2.1 queuine tRNA-ribosyltransferase compare
Atu2804 -0.5 -3.8 cobaltochelatase subunit compare
Atu0085 -0.5 -1.9 tRNA pseudouridine 55 synthase compare
Atu4418 -0.5 -1.8 glutaryl-CoA dehydrogenase compare
Atu5045 -0.5 -1.5 hypothetical protein compare
Atu3593 -0.5 -3.7 hypothetical protein compare
Atu1847 -0.5 -1.3 hypothetical protein compare
Atu0971 -0.5 -2.0 two component sensor kinase compare
Atu8133 -0.5 -3.0 hypothetical protein compare
Atu2532 -0.5 -1.6 transcriptional regulator, MarR family compare
Atu1086 -0.5 -3.1 MFS permease compare
Atu1904 -0.5 -1.9 transcriptional regulator compare
Atu3763 -0.5 -0.8 hypothetical protein compare
Atu2824 -0.5 -2.4 hypothetical protein compare
Atu2245 -0.5 -3.8 Na+/Pi-cotransporter compare
Atu3162 -0.5 -3.6 LacI family transcriptional regulator compare
Atu1087 -0.5 -3.0 secretion protein compare
Atu2026 -0.5 -2.8 exodeoxyribonuclease V compare
Atu4635 -0.5 -2.6 hypothetical protein compare
Atu3619 -0.5 -1.2 hypothetical protein compare
Atu0106 -0.5 -1.7 cold shock protein compare
Atu4176 -0.5 -2.1 hypothetical protein compare
Atu0602 -0.5 -3.0 glutamine synthetase compare
Atu1077 -0.5 -1.6 DNA repair protein compare
Atu4148 -0.5 -1.9 UDP-glucuronic acid epimerase compare
Atu4880 -0.5 -2.9 AraC family transcriptional regulator compare
Atu3505 -0.5 -2.7 3-hydroxyisobutyryl-CoA hydrolase compare
Atu2073 -0.5 -2.6 membrane protein compare
Atu8165 -0.5 -1.2 hypothetical protein compare
Atu4870 -0.5 -3.2 NADP-dependent quinone oxidoreductase compare
Atu3579 -0.5 -1.2 lactoylglutathione lyase compare
Atu0340 -0.4 -1.3 SAM dependent methyltransferase compare
Atu3015 -0.4 -1.9 hypothetical protein compare
Atu3485 -0.4 -2.9 short chain dehydrogenase compare
Atu1739 -0.4 -1.7 permease compare
Atu5157 -0.4 -1.0 hypothetical protein compare
Atu2640 -0.4 -1.9 hypothetical protein compare
Atu8096 -0.4 -1.0 hypothetical protein compare
Atu2582 -0.4 -2.3 UDP-glucose/GDP-mannose dehydrogenase compare
Atu8190 -0.4 -2.6 hypothetical protein compare
Atu0185 -0.4 -1.0 methylglyoxal synthase compare
Atu1354 -0.4 -0.8 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2620 -0.4 -0.8 hypothetical protein compare
Atu1584 -0.4 -2.0 hypothetical protein compare
Atu3746 -0.4 -2.6 hypothetical protein compare
Atu0535 -0.4 -1.6 hypothetical protein compare
Atu0854 -0.4 -1.6 hypothetical protein compare
Atu3812 -0.4 -2.2 hypothetical protein compare
Atu1110 -0.4 -1.6 cytosol aminopeptidase compare
Atu1542 -0.4 -2.3 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2376 -0.4 -1.8 hypothetical protein compare
Atu0039 -0.4 -1.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu1634 -0.4 -0.6 hypothetical protein compare
Atu3183 -0.4 -0.5 hypothetical protein compare
Atu2798 -0.4 -1.6 precorrin-6y methyltransferase compare
Atu1902 -0.4 -2.5 transketolase compare
Atu4527 -0.4 -1.0 hypothetical protein compare
Atu3336 -0.4 -1.7 hypothetical protein compare
Atu1449 -0.4 -2.4 potassium uptake protein compare
Atu1678 -0.4 -2.0 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu0357 -0.4 -2.3 phosphate starvation inducible protein compare
Atu1680 -0.4 -2.4 peptidyl prolyl cis-trans isomerase compare
Atu0201 -0.4 -1.0 hypothetical protein compare
Atu3025 -0.4 -3.0 oligo alginate lyase compare
Atu0031 -0.4 -0.8 PTS system, IIA component compare
Atu0041 -0.4 -0.8 glutamine amidotransferase compare
Atu1359 -0.4 -0.6 dnaK deletion suppressor protein compare
Atu1463 -0.4 -1.7 glycine cleavage system component H compare
Atu1980 -0.4 -1.3 hypothetical protein compare
Atu8094 -0.4 -1.4 hypothetical protein compare
Atu8099 -0.4 -1.5 hypothetical protein compare
Atu1968 -0.4 -1.0 hypothetical protein compare
Atu2433 -0.4 -0.7 hypothetical protein compare
Atu3712 -0.4 -0.5 hypothetical protein compare
Atu3201 -0.4 -2.5 TetR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress p-Coumaric acid across organisms