Experiment set11IT043 for Agrobacterium fabrum C58

Compare to:

LB with p-Coumaric acid 1.25 mM

200 most important genes:

  gene name fitness t score description  
Atu3730 -3.1 -3.1 hypothetical protein compare
Atu3469 -3.0 -4.9 phosphoglyceromutase compare
Atu0161 -2.7 -13.8 biopolymer transport protein compare
Atu0162 -2.7 -11.3 biopolymer transport protein compare
Atu0163 -2.6 -7.6 tonB protein compare
Atu4217 -2.1 -3.0 TetR family transcriptional regulator compare
Atu3008 -1.8 -1.6 hypothetical protein compare
Atu2125 -1.7 -1.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu0043 -1.5 -3.2 imidazoleglycerol-phosphate dehydratase compare
Atu0184 -1.4 -3.8 glucokinase compare
Atu4148 -1.4 -5.4 UDP-glucuronic acid epimerase compare
Atu4317 -1.4 -4.0 TetR family transcriptional regulator compare
Atu2662 -1.3 -1.6 acetyltransferase compare
Atu4773 -1.3 -2.3 two component response regulator compare
Atu2585 -1.3 -6.1 hypothetical protein compare
Atu2591 -1.2 -6.3 glucosyltransferase compare
Atu0784 -1.2 -4.1 hypothetical protein compare
Atu0030 -1.2 -2.2 phosphocarrier protein HPr compare
Atu2590 -1.2 -6.8 hypothetical protein compare
Atu4882 -1.2 -3.1 hypothetical protein compare
Atu0399 -1.1 -3.8 dihydroorotase compare
Atu2577 -1.1 -9.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu2583 -1.1 -7.3 glycosyltransferase compare
Atu1891 -1.1 -2.6 cobalamin biosynthesis protein compare
Atu1417 -1.1 -6.4 enoyl-CoA hydratase compare
Atu6098 -1.1 -1.2 transcriptional regulator, HTH family compare
Atu2801 -1.1 -4.0 precorrin-2 C20 methyltransferase compare
Atu2207 -1.1 -3.5 two component sensor kinase compare
Atu2800 -1.1 -4.2 precorrin-3B C17-methyltransferase compare
Atu2584 -1.1 -3.9 hypothetical protein compare
Atu2793 -1.1 -4.3 cobyrinic acid a,c-diamide synthase compare
Atu8099 -1.0 -3.9 hypothetical protein compare
Atu3013 -1.0 -4.1 hypothetical protein compare
Atu0153 -1.0 -4.7 transcriptional regulator, Fur family compare
Atu4072 -1.0 -1.7 nodulation protein N compare
Atu3688 -1.0 -3.1 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu2582 -1.0 -5.8 UDP-glucose/GDP-mannose dehydrogenase compare
Atu2592 -1.0 -4.8 hypothetical protein compare
Atu4878 -1.0 -3.7 hypothetical protein compare
Atu4149 -1.0 -6.5 UDP-glucose 6-dehydrogenase compare
Atu8138 -0.9 -1.8 hypothetical protein compare
Atu4890 -0.9 -2.0 IS426 transposase compare
Atu0050 -0.9 -3.1 two component response regulator compare
Atu3016 -0.9 -4.4 phosphoglyceromutase compare
Atu4879 -0.9 -5.3 hypothetical protein compare
Atu2799 -0.9 -3.3 precorrin-6x reductase compare
Atu3015 -0.9 -4.8 hypothetical protein compare
Atu3663 -0.9 -1.5 hypothetical protein compare
Atu2805 -0.9 -4.4 cobalamin synthesis protein compare
Atu2809 -0.9 -5.3 cobalamin biosynthesis protein compare
Atu4884 -0.9 -3.3 hypothetical protein compare
Atu4889 -0.8 -3.6 hypothetical protein compare
Atu0486 -0.8 -3.7 dihydroorotate dehydrogenase compare
Atu2798 -0.8 -2.8 precorrin-6y methyltransferase compare
Atu4099 -0.8 -4.9 hypothetical protein compare
Atu1446 -0.8 -1.7 two component response regulator compare
Atu3005 -0.8 -0.9 hypothetical protein compare
Atu6189 -0.8 -1.4 protein secretion chaperone compare
Atu3012 -0.8 -1.6 hypothetical protein compare
Atu1542 -0.8 -4.1 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1694 -0.8 -2.9 hypothetical protein compare
Atu4880 -0.8 -5.2 AraC family transcriptional regulator compare
Atu1850 -0.8 -3.2 phosphoribosylformylglycinamidine synthetase II compare
Atu0421 -0.8 -1.3 ABC transporter, membrane spanning protein compare
Atu4468 -0.8 -4.5 iron transport ABC transporter permease compare
Atu1359 -0.8 -1.0 dnaK deletion suppressor protein compare
Atu4881 -0.8 -4.6 hypothetical protein compare
Atu0638 -0.8 -2.2 hypothetical protein compare
Atu3593 -0.8 -4.7 hypothetical protein compare
Atu1683 -0.8 -2.3 hypothetical protein compare
Atu3022 -0.8 -4.6 sugar ABC transporter permease compare
Atu1439 -0.8 -2.1 hypothetical protein compare
Atu0971 -0.8 -2.8 two component sensor kinase compare
Atu4872 -0.7 -4.4 LysR family transcriptional regulator compare
Atu2796 -0.7 -4.2 precorrin-4 C11-methyltransferase compare
Atu8190 -0.7 -2.9 hypothetical protein compare
Atu4887 -0.7 -3.4 hypothetical protein compare
Atu0036 -0.7 -2.0 hypothetical protein compare
Atu0824 -0.7 -1.2 hypothetical protein compare
Atu3014 -0.7 -1.7 hypothetical protein compare
Atu1405 -0.7 -2.9 transcriptional regulator, GntR family compare
Atu2293 -0.7 -1.2 hypothetical protein compare
Atu3739 -0.7 -1.3 phosphoglycerate kinase compare
Atu2832 -0.7 -2.8 tRNA modification GTPase compare
Atu4877 -0.7 -5.2 short-chain dehydrogenase compare
Atu2808 -0.7 -4.2 cobyric acid synthase compare
Atu0039 -0.7 -1.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu5034 -0.7 -1.3 hypothetical protein compare
Atu3020 -0.7 -3.7 GntR family transcriptional regulator compare
Atu2803 -0.7 -2.9 Cobalamin biosynthesis associated protein compare
Atu8202 -0.7 -3.1 hypothetical protein compare
Atu3011 -0.7 -1.6 ArsR family transcriptional regulator compare
Atu3019 -0.7 -4.8 hypothetical protein compare
Atu3024 -0.7 -4.6 sugar ABC transporter permease compare
Atu2640 -0.7 -2.6 hypothetical protein compare
Atu0142 -0.7 -1.5 cytochrome o ubiquinol oxidase subunit II compare
Atu0031 -0.7 -1.2 PTS system, IIA component compare
Atu0062 -0.7 -3.4 transcriptional regulator, ROK family compare
Atu4133 -0.7 -1.5 hypothetical protein compare
Atu4876 -0.7 -5.1 oxidoreductase compare
Atu2441 -0.7 -1.5 RNA methylase compare
Atu3754 -0.7 -3.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2804 -0.7 -4.8 cobaltochelatase subunit compare
Atu0331 -0.7 -1.9 sigma-54 modulation protein compare
Atu4888 -0.7 -2.8 hypothetical protein compare
Atu0977 -0.6 -2.6 serine protease DO-like protease compare
Atu3763 -0.6 -0.9 hypothetical protein compare
Atu0185 -0.6 -1.5 methylglyoxal synthase compare
Atu1380 -0.6 -3.0 zinc metallopeptidase compare
Atu1364 -0.6 -3.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2084 -0.6 -0.8 hypothetical protein compare
Atu1902 -0.6 -3.1 transketolase compare
Atu0400 -0.6 -2.3 orotate phosphoribosyltransferase compare
Atu2795 -0.6 -3.4 cobalamin biosynthetic protein compare
Atu3023 -0.6 -4.2 sugar ABC transporter permease compare
Atu1701 -0.6 -1.6 protein-L-isoaspartate O-methyltransferase compare
Atu0999 -0.6 -3.3 magnesium transport protein compare
Atu2772 -0.6 -2.5 Invasion protein A compare
Atu0051 -0.6 -2.7 two component sensor kinase compare
Atu1140 -0.6 -2.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3963 -0.6 -3.4 GntR family transcriptional regulator compare
Atu0422 -0.6 -1.5 ABC transporter, membrane spanning protein compare
Atu0846 -0.6 -1.8 transcriptional regulator, MarR family compare
Atu2439 -0.6 -1.4 hypothetical protein compare
Atu2790 -0.6 -1.8 3-isopropylmalate dehydratase, small subunit compare
Atu2794 -0.6 -2.3 uroporphyrin-III C-methyltransferase compare
Atu5075 -0.6 -3.5 GntR family transcriptional regulator compare
Atu2807 -0.6 -3.7 cob(I)alamin adenosyltransferase compare
Atu0434 -0.6 -1.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3690 -0.6 -4.2 iron (III ABC transporter permease dicitrate ABC transporter permease compare
Atu4893 -0.6 -1.8 hypothetical protein compare
Atu2270 -0.6 -0.8 ATP-dependent Clp protease, proteolytic subunit compare
Atu4868 -0.6 -4.3 oxidoreductase compare
Atu1260 -0.6 -1.1 hypothetical protein compare
Atu0659 -0.6 -2.4 NTP pyrophosphohydrolase, MutT family compare
Atu1258 -0.6 -2.9 ATP-dependent Clp protease, proteolytic subunit compare
Atu3017 -0.6 -0.9 phosphoglyceromutase compare
Atu4873 -0.6 -3.7 TetR family transcriptional regulator compare
Atu1184 -0.6 -1.7 hypothetical protein compare
Atu0401 -0.6 -2.3 fructokinase compare
Atu4875 -0.6 -3.3 hypothetical protein compare
Atu1327 -0.6 -1.9 NADH-ubiquinone oxidoreductase compare
Atu2824 -0.6 -2.2 hypothetical protein compare
Atu0640 -0.6 -1.6 hypothetical protein compare
Atu1570 -0.6 -0.7 hypothetical protein compare
Atu0851 -0.5 -2.5 hypothetical protein compare
Atu0298 -0.5 -2.6 orotidine 5 compare
Atu0029 -0.5 -3.0 S-adenosylhomocysteine hydrolase compare
Atu4874 -0.5 -3.4 hypothetical protein compare
Atu1801 -0.5 -2.0 hypothetical protein compare
Atu1062 -0.5 -1.3 phosphatidylserine synthase compare
Atu0141 -0.5 -1.1 cytochrome O ubiquinol oxidase subunit I compare
Atu3448 -0.5 -3.3 dibenzothiophene desulfurization protein B compare
Atu0115 -0.5 -0.8 hypothetical protein compare
Atu1052 -0.5 -2.0 hypothetical protein compare
Atu2684 -0.5 -1.0 hypothetical protein compare
Atu3031 -0.5 -0.9 hypothetical protein compare
Atu2797 -0.5 -2.0 cobalamin biosynthesis protein compare
Atu4161 -0.5 -1.5 hypothetical protein compare
Atu1163 -0.5 -1.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2192 -0.5 -1.0 hypothetical protein compare
Atu3009 -0.5 -0.8 exopolysaccharide production protein compare
Atu0225 -0.5 -0.8 hypothetical protein compare
Atu0938 -0.5 -1.7 transcriptional regulator, MerR family compare
Atu3395 -0.5 -3.1 iron (III ABC transporter permease ABC transporter permease compare
Atu3733 -0.5 -1.1 hypothetical protein compare
Atu0525 -0.5 -2.1 transcriptional regulator, LuxR family compare
Atu3026 -0.5 -2.9 short chain dehydrogenase compare
Atu3021 -0.5 -3.3 sugar ABC transporter ATPase compare
Atu3028 -0.5 -3.5 hypothetical protein compare
Atu3687 -0.5 -4.5 TonB-dependent receptor compare
Atu4527 -0.5 -1.1 hypothetical protein compare
Atu8117 -0.5 -1.9 hypothetical protein compare
Atu2650 -0.5 -3.1 glycerol-3-phosphate dehydrogenase compare
Atu8093 -0.5 -2.4 hypothetical protein compare
Atu4892 -0.5 -3.6 hypothetical protein compare
Atu3691 -0.5 -3.6 iron (III) dicitrate ABC transporter ATPase compare
Atu0388 -0.5 -3.9 two component sensor kinase compare
Atu2802 -0.5 -2.5 precorrin-8X methylmutase compare
Atu8087 -0.5 -0.6 putative peptidoglycan binding protein compare
Atu3030 -0.5 -2.4 hypothetical protein compare
Atu0361 -0.5 -1.4 transcriptional regulator compare
Atu3018 -0.5 -1.9 hypothetical protein compare
Atu1606 -0.5 -2.6 methionine aminopeptidase compare
Atu0981 -0.5 -3.6 glutamate-ammonia-ligase adenylyltransferase compare
Atu1513 -0.5 -2.7 ABC excinuclease subunit A compare
Atu0895 -0.5 -1.2 ABC transporter, substrate binding protein compare
Atu2633 -0.5 -1.0 RhtB family transporter compare
Atu3689 -0.5 -3.4 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu1369 -0.5 -1.6 HIT family protein compare
Atu3029 -0.5 -3.4 glucarate dehydratase compare
Atu1678 -0.5 -2.3 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu0386 -0.5 -1.2 hypothetical protein compare
Atu1759 -0.5 -3.3 L-serine dehydratase compare
Atu4469 -0.5 -1.8 iron ABC transporter permease compare
Atu1110 -0.5 -1.7 cytosol aminopeptidase compare
Atu3025 -0.5 -3.7 oligo alginate lyase compare
Atu2209 -0.5 -1.4 pyrroline-5-carboxylate reductase compare
Atu0073 -0.5 -2.9 recF-like protein compare
Atu4867 -0.5 -3.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress p-Coumaric acid across organisms