Experiment set11IT038 for Agrobacterium fabrum C58

Compare to:

LB with syringaldehyde 0.5 mM

200 most detrimental genes:

  gene name fitness t score description  
Atu0188 +1.2 5.5 ABC transporter, membrane spanning protein (peptide) compare
Atu5451 +1.0 1.7 hypothetical protein compare
Atu0533 +1.0 2.7 putative inhibitor of septum formation compare
Atu0190 +0.9 6.1 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu4677 +0.9 1.7 hypothetical protein compare
Atu3619 +0.8 1.8 hypothetical protein compare
Atu8161 +0.8 1.9 hypothetical protein compare
Atu0201 +0.8 1.5 hypothetical protein compare
Atu1774 +0.7 4.0 ABC transporter, substrate binding protein (peptide) compare
Atu0354 +0.7 1.9 ferric uptake regulator compare
Atu0585 +0.7 1.9 hypothetical protein compare
Atu2432 +0.7 1.9 hypothetical protein compare
Atu0925 +0.6 2.0 hypothetical protein compare
Atu3001 +0.6 2.0 hypothetical protein compare
Atu1182 +0.6 1.2 hypothetical protein compare
Atu0749 +0.6 2.0 biotin synthesis BioY protein compare
Atu6165 +0.6 0.9 hypothetical protein compare
Atu3775 +0.6 1.4 hypothetical protein compare
Atu1835 +0.6 1.9 hypothetical protein compare
Atu3628 +0.6 2.4 hypothetical protein compare
Atu0645 +0.6 1.0 hypothetical protein compare
Atu5130 +0.6 3.2 attachment protein compare
Atu5427 +0.6 2.7 hypothetical protein compare
Atu5470 +0.6 1.3 hypothetical protein compare
Atu1637 +0.6 2.2 hypothetical protein compare
Atu1629 +0.6 1.1 transcriptional regulator, ArsR family compare
Atu0530 +0.5 2.9 UDP-galactose 4-epimerase compare
Atu3120 +0.5 1.3 hypothetical protein compare
Atu0941 +0.5 0.9 hypothetical protein compare
Atu1573 +0.5 1.0 hypothetical protein compare
Atu1725 +0.5 2.3 hypothetical protein compare
Atu1775 +0.5 2.2 polyketide biosynthesis associated protein compare
Atu3092 +0.5 4.4 hypothetical protein compare
Atu4724 +0.5 2.5 hypothetical protein compare
Atu8056 +0.5 0.8 hypothetical protein compare
Atu1149 +0.5 0.7 adenylate cyclase compare
Atu1836 +0.5 1.5 hypothetical protein compare
Atu5207 +0.5 2.4 hypothetical protein compare
Atu1830 +0.5 1.5 bacterioferritin comigratory protein compare
Atu3780 +0.5 3.1 hypothetical protein compare
Atu2163 +0.5 0.6 hypothetical protein compare
Atu4576 +0.5 3.9 ROK family transcriptional regulator compare
Atu1863 +0.5 3.1 permease compare
Atu4743 +0.5 2.7 LacI family transcriptional regulator compare
Atu0026 +0.5 0.6 hypothetical protein compare
Atu4854 +0.5 2.9 hypothetical protein compare
Atu0809 +0.5 1.1 hypothetical protein compare
Atu8018 +0.5 0.7 hypothetical protein compare
Atu0479 +0.5 3.3 ABC transporter, substrate binding protein (amino acid) compare
Atu1369 +0.5 1.5 HIT family protein compare
Atu1354 +0.5 1.0 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu3415 +0.5 2.5 ABC transporter substrate binding protein compare
Atu4831 +0.5 2.9 hypothetical protein compare
Atu6189 +0.5 0.7 protein secretion chaperone compare
Atu0953 +0.5 0.8 hypothetical protein compare
Atu3053 +0.5 3.8 peptide ABC transporter ATPase compare
Atu1056 +0.5 1.9 hypothetical protein compare
Atu4823 +0.5 4.0 acetyl-CoA acetyltransferase compare
Atu2631 +0.5 2.1 hypothetical protein compare
Atu2248 +0.4 2.0 hypothetical protein compare
Atu2489 +0.4 2.7 hypothetical protein compare
Atu0674 +0.4 1.9 hypothetical protein compare
Atu0931 +0.4 3.4 penicillin binding protein compare
Atu0237 +0.4 1.3 hypothetical protein compare
Atu5540 +0.4 0.6 hypothetical protein compare
Atu5142 +0.4 0.8 hypothetical protein compare
Atu4846 +0.4 3.5 hypothetical protein compare
Atu0956 +0.4 2.1 phage prohead protease compare
Atu4095 +0.4 2.5 hypothetical protein compare
Atu4807 +0.4 3.3 exopolysaccharide export protein compare
Atu1892 +0.4 1.2 hypothetical protein compare
Atu2787 +0.4 0.9 hypothetical protein compare
Atu3423 +0.4 1.2 hypothetical protein compare
Atu1469 +0.4 1.7 hypothetical protein compare
Atu3088 +0.4 3.3 spermidine/putrescine ABC transporter substrate-binding protein compare
Atu3072 +0.4 3.7 peptide synthetase compare
Atu0538 +0.4 1.3 hypothetical protein compare
Atu3051 +0.4 3.5 agropine synthesis reductase compare
Atu4779 +0.4 1.5 hypothetical protein compare
Atu5173 +0.4 0.9 dehydrogenase compare
Atu4821 +0.4 2.8 3-oxoacyl-ACP reductase compare
Atu4796 +0.4 3.3 hypothetical protein compare
Atu3070 +0.4 3.5 allantoate amidohydrolase compare
Atu3094 +0.4 3.4 methyl-accepting chemotaxis protein compare
Atu2669 +0.4 2.3 RhtB family transporter compare
Atu3067 +0.4 2.6 hypothetical protein compare
Atu0551 +0.4 1.2 flagellar protein FLGA precursor compare
Atu0926 +0.4 1.2 hypothetical protein compare
Atu2201 +0.4 1.2 hydrolase compare
Atu4839 +0.4 3.0 C factor compare
Atu4820 +0.4 2.7 hypothetical protein compare
Atu3061 +0.4 3.2 diguanylate cyclase compare
Atu1737 +0.4 1.0 hypothetical protein compare
Atu3616 +0.4 2.6 hypothetical protein compare
Atu3006 +0.4 1.8 hypothetical protein compare
Atu4458 +0.4 2.0 hypothetical protein compare
Atu4836 +0.4 3.2 hypothetical protein compare
Atu0723 +0.4 0.9 FAD dependent oxidoreductase compare
Atu0690 +0.4 1.1 hypothetical protein compare
Atu8023 +0.4 1.0 hypothetical protein compare
Atu4081 +0.4 2.3 aspartate racemase compare
Atu8034 +0.4 1.6 hypothetical protein compare
Atu3089 +0.4 2.1 spermidine/putrescine ABC transporter ATPase compare
Atu3331 +0.4 1.7 hypothetical protein compare
Atu8010 +0.4 1.6 hypothetical protein compare
Atu8200 +0.4 2.1 hypothetical protein compare
Atu4798 +0.4 3.0 hypothetical protein compare
Atu0101 +0.4 1.5 cytochrome c compare
Atu3068 +0.4 2.5 ribokinase compare
Atu3081 +0.4 3.2 hypothetical protein compare
Atu2368 +0.4 0.6 hypothetical protein compare
Atu1853 +0.4 1.7 hypothetical protein compare
Atu0106 +0.4 0.7 cold shock protein compare
Atu0845 +0.4 1.5 hypothetical protein compare
Atu4817 +0.4 3.2 glycosyltransferase compare
Atu3604 +0.4 0.8 hypoxanthine phosphoribosyltransferase compare
Atu3062 +0.4 2.8 LacI family transcriptional regulator compare
Atu4674 +0.4 3.0 GntR family transcriptional regulator compare
Atu3111 +0.4 2.7 sugar ABC transporter ATPase compare
Atu4838 +0.4 2.5 outer membrane lipoprotein compare
Atu4795 +0.4 3.1 LuxR family transcriptional regulator compare
Atu1286 +0.4 2.0 hypothetical protein compare
Atu3126 +0.4 1.7 hypothetical protein compare
Atu3620 +0.4 2.3 hypothetical protein compare
Atu2237 +0.3 1.8 cytochrome c1 compare
Atu1834 +0.3 2.1 mutT like protein compare
Atu3047 +0.3 2.6 oligopeptide ABC transporter permease compare
Atu3644 +0.3 1.7 hypothetical protein compare
Atu0986 +0.3 0.7 hypothetical protein compare
Atu1239 +0.3 3.0 exopolysaccharide production protein compare
Atu3860 +0.3 3.1 hypothetical protein compare
Atu3050 +0.3 2.7 AgaE protein compare
Atu4842 +0.3 3.0 sugar ABC transporter substrate-binding protein compare
Atu1219 +0.3 0.6 hypothetical protein compare
Atu3079 +0.3 2.8 chromate transport protein compare
Atu8193 +0.3 1.3 hypothetical protein compare
Atu0765 +0.3 2.5 TldD compare
Atu8155 +0.3 0.8 hypothetical protein compare
Atu4811 +0.3 2.4 UDP-phosphate alpha N-acetylglucosaminyltransferase compare
Atu1508 +0.3 1.2 hypothetical protein compare
Atu4083 +0.3 1.8 aldose epimerase compare
Atu1856 +0.3 1.9 inositol monophosphatase family protein compare
Atu0134 +0.3 1.9 hypothetical protein compare
Atu3046 +0.3 3.0 oxidoreductase compare
Atu4345 +0.3 1.3 hypothetical protein compare
Atu3036 +0.3 1.5 dipeptide ABC transporter permease compare
Atu3102 +0.3 2.7 sugar ABC transporter substrate-binding protein compare
Atu8153 +0.3 1.2 hypothetical protein compare
Atu1971 +0.3 1.1 hypothetical protein compare
Atu2615 +0.3 2.1 hypothetical protein compare
Atu4800 +0.3 2.7 hypothetical protein compare
Atu3063 +0.3 2.4 ABC transporter permease compare
Atu3074 +0.3 2.5 short chain dehydrogenase compare
Atu4834 +0.3 2.6 6-phosphogluconate dehydrogenase compare
Atu2441 +0.3 1.0 RNA methylase compare
Atu3475 +0.3 1.9 acetyl-CoA C-acetyltransferase compare
Atu4850 +0.3 2.4 hypothetical protein compare
Atu1575 +0.3 1.8 cystathionine beta lyase compare
Atu3065 +0.3 2.9 sugar ABC transporter permease compare
Atu4777 +0.3 2.3 hypothetical protein compare
Atu6108 +0.3 1.9 alkylphosphonate uptake protein compare
Atu4753 +0.3 1.4 amino acid ABC transporter permease compare
Atu1865 +0.3 1.3 hypothetical protein compare
Atu2516 +0.3 2.1 ABC transporter, membrane spanning protein (dipeptide) compare
Atu3122 +0.3 1.6 cold shock protein compare
Atu8025 +0.3 0.8 hypothetical protein compare
Atu3049 +0.3 2.6 oligopeptide ABC transporter substrate-binding protein compare
Atu4815 +0.3 2.2 glycosyltransferase compare
Atu4841 +0.3 2.4 DeoR family transcriptional regulator compare
Atu0105 +0.3 1.3 hypothetical protein compare
Atu4814 +0.3 2.2 acetyltransferase compare
Atu1602 +0.3 2.1 transcriptional activator, Crp family compare
Atu4822 +0.3 2.4 acyl-CoA synthetase compare
Atu5485 +0.3 1.3 hypothetical protein compare
Atu3075 +0.3 2.6 TetR family transcriptional regulator compare
Atu0871 +0.3 1.6 branched-chain-amino-acid aminotransferase compare
Atu1920 +0.3 1.8 hypothetical protein compare
Atu0386 +0.3 0.9 hypothetical protein compare
Atu1967 +0.3 1.8 hypothetical protein compare
Atu1236 +0.3 1.9 polysaccharide biosynthesis glycosyltransferase compare
Atu2682 +0.3 1.6 hypothetical protein compare
Atu3043 +0.3 2.5 hydantoinase beta subunit-like protein compare
Atu8131 +0.3 2.4 pH adaption potassium efflux system protein compare
Atu5468 +0.3 1.0 hypothetical protein compare
Atu3091 +0.3 2.3 hypothetical protein compare
Atu8053 +0.3 1.2 hypothetical protein compare
Atu4840 +0.3 1.5 hypothetical protein compare
Atu1952 +0.3 0.6 hypothetical protein compare
Atu4791 +0.3 1.6 hypothetical protein compare
Atu3056 +0.3 2.6 beta 1,3 glucan synthase catalytic subunit compare
Atu4802 +0.3 2.4 glutamate-1-semialdehyde 2,1-aminomutase compare
Atu3634 +0.3 1.6 penicillin-binding protein dacf precursor compare
Atu4818 +0.3 1.7 AsnC family transcriptional regulator compare
Atu8097 +0.3 2.6 hypothetical protein compare
Atu4803 +0.3 2.0 two component response regulator compare
Atu4894 +0.3 1.8 transposase compare
Atu1815 +0.3 2.3 HlyD family secretion protein compare
Atu2058 +0.3 1.5 hypothetical protein compare
Atu2063 +0.3 1.0 hypothetical protein compare
Atu2457 +0.3 1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress syringaldehyde across organisms