Experiment set11IT033 for Agrobacterium fabrum C58

Compare to:

LB with Acetosyringone 1.25 mM

200 most important genes:

  gene name fitness t score description  
Atu0331 -2.2 -4.0 sigma-54 modulation protein compare
Atu1308 -2.0 -6.7 aspartate carbamoyl transferase catalytic subunit compare
Atu3469 -2.0 -3.9 phosphoglyceromutase compare
Atu0399 -2.0 -7.3 dihydroorotase compare
Atu2306 -2.0 -9.0 methionine aminopeptidase compare
Atu2584 -1.9 -6.3 hypothetical protein compare
Atu0971 -1.9 -4.8 two component sensor kinase compare
Atu3754 -1.8 -6.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1359 -1.7 -1.6 dnaK deletion suppressor protein compare
Atu0400 -1.7 -5.0 orotate phosphoribosyltransferase compare
Atu3730 -1.6 -2.3 hypothetical protein compare
Atu4149 -1.6 -8.1 UDP-glucose 6-dehydrogenase compare
Atu4217 -1.6 -2.5 TetR family transcriptional regulator compare
Atu1850 -1.6 -3.6 phosphoribosylformylglycinamidine synthetase II compare
Atu0647 -1.6 -6.1 phosphoribosylamine--glycine ligase compare
Atu0784 -1.5 -3.7 hypothetical protein compare
Atu2692 -1.5 -4.4 intracellular septation protein compare
Atu3755 -1.5 -4.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1739 -1.5 -5.3 permease compare
Atu2585 -1.5 -6.0 hypothetical protein compare
Atu1141 -1.4 -6.8 Phosphoribosylglycinamide synthetase compare
Atu2590 -1.4 -8.4 hypothetical protein compare
Atu1845 -1.4 -4.5 phosphoribosylformylglycinamidine synthase I compare
Atu3009 -1.4 -1.6 exopolysaccharide production protein compare
Atu0486 -1.4 -4.7 dihydroorotate dehydrogenase compare
Atu2583 -1.4 -9.1 glycosyltransferase compare
Atu2591 -1.3 -5.5 glucosyltransferase compare
Atu1140 -1.3 -5.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2052 -1.3 -5.5 hypothetical protein compare
Atu6098 -1.3 -2.0 transcriptional regulator, HTH family compare
Atu0031 -1.3 -1.8 PTS system, IIA component compare
Atu1446 -1.3 -2.1 two component response regulator compare
Atu2439 -1.3 -2.3 hypothetical protein compare
Atu0298 -1.2 -5.1 orotidine 5 compare
Atu3014 -1.2 -3.0 hypothetical protein compare
Atu2207 -1.2 -2.3 two component sensor kinase compare
Atu2577 -1.2 -8.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu1307 -1.2 -4.6 dihydroorotase compare
Atu4882 -1.1 -2.6 hypothetical protein compare
Atu6131 -1.1 -5.2 TraR Antiactivator compare
Atu1219 -1.1 -1.0 hypothetical protein compare
Atu1327 -1.1 -2.2 NADH-ubiquinone oxidoreductase compare
Atu1810 -1.1 -1.7 hypothetical protein compare
Atu2582 -1.1 -4.3 UDP-glucose/GDP-mannose dehydrogenase compare
Atu2125 -1.1 -1.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu4148 -1.1 -4.6 UDP-glucuronic acid epimerase compare
Atu2592 -1.1 -5.0 hypothetical protein compare
Atu0999 -1.0 -5.2 magnesium transport protein compare
Atu2249 -1.0 -1.3 hypothetical protein compare
Atu1754 -1.0 -1.0 hypothetical protein compare
Atu2824 -1.0 -3.9 hypothetical protein compare
Atu1075 -1.0 -4.0 amidophosphoribosyltransferase compare
Atu0421 -1.0 -1.5 ABC transporter, membrane spanning protein compare
Atu4470 -1.0 -4.3 iron ABC transporter ATPase compare
Atu1163 -1.0 -1.7 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1683 -0.9 -1.4 hypothetical protein compare
Atu2684 -0.9 -1.5 hypothetical protein compare
Atu6114 -0.9 -1.8 hypothetical protein compare
Atu1099 -0.9 -5.1 hypothetical protein compare
Atu1844 -0.9 -1.8 Phosphoribosylformylglycinamidine synthetase compare
Atu6166 -0.9 -8.5 two component sensor kinase compare
Atu6178 -0.9 -7.8 two component response regulator compare
Atu4317 -0.9 -2.5 TetR family transcriptional regulator compare
Atu3598 -0.9 -2.0 thiol:disulfide interchange protein compare
Atu0977 -0.9 -3.3 serine protease DO-like protease compare
Atu3015 -0.9 -3.9 hypothetical protein compare
Atu2239 -0.9 -3.0 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0912 -0.9 -1.5 Na+/H+ antiporter compare
Atu3012 -0.9 -1.5 hypothetical protein compare
Atu3486 -0.8 -2.1 DeoR family transcriptional regulator compare
Atu3491 -0.8 -1.8 hypothetical protein compare
Atu1030 -0.8 -1.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4888 -0.8 -3.5 hypothetical protein compare
Atu0434 -0.8 -1.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3121 -0.8 -1.2 cold shock protein compare
Atu4471 -0.8 -5.3 ABC transporter substrate-binding protein compare
Atu3663 -0.8 -1.4 hypothetical protein compare
Atu0659 -0.8 -3.3 NTP pyrophosphohydrolase, MutT family compare
Atu2787 -0.8 -1.1 hypothetical protein compare
Atu2800 -0.8 -2.2 precorrin-3B C17-methyltransferase compare
Atu3739 -0.8 -2.4 phosphoglycerate kinase compare
Atu2728 -0.8 -3.0 beta (1-->2) glucan export ATP-binding protein compare
Atu4468 -0.7 -4.4 iron transport ABC transporter permease compare
Atu0017 -0.7 -2.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu8032 -0.7 -1.8 hypothetical protein compare
Atu0780 -0.7 -5.0 hypothetical protein compare
Atu0030 -0.7 -1.4 phosphocarrier protein HPr compare
Atu4884 -0.7 -2.8 hypothetical protein compare
Atu2237 -0.7 -2.8 cytochrome c1 compare
Atu0419 -0.7 -1.6 two component sensor kinase compare
Atu5115 -0.7 -1.6 hypothetical protein compare
Atu8096 -0.7 -1.5 hypothetical protein compare
Atu2620 -0.7 -1.2 hypothetical protein compare
Atu1184 -0.7 -1.9 hypothetical protein compare
Atu0630 -0.7 -1.7 hypothetical protein compare
Atu0533 -0.7 -1.4 putative inhibitor of septum formation compare
Atu2555 -0.7 -2.6 L-lysine 2,3-aminomutase compare
Atu0025 -0.7 -1.9 hypothetical protein compare
Atu0943 -0.7 -1.8 hypothetical protein compare
Atu0295 -0.7 -2.0 hypothetical protein compare
Atu8095 -0.7 -3.0 hypothetical protein compare
Atu2821 -0.7 -2.6 transcriptional regulator, GntR family compare
Atu4099 -0.7 -3.3 hypothetical protein compare
Atu4877 -0.7 -4.1 short-chain dehydrogenase compare
Atu0149 -0.7 -2.4 enoyl-(acyl-carrier-protein) reductase compare
Atu3519 -0.7 -3.9 peptidyl-prolyl cis-trans isomerase compare
Atu0687 -0.6 -1.6 hypothetical protein compare
Atu1803 -0.6 -3.8 cold shock protein compare
Atu2832 -0.6 -2.2 tRNA modification GTPase compare
Atu1333 -0.6 -1.7 outer membrane protein compare
Atu4890 -0.6 -1.4 IS426 transposase compare
Atu0361 -0.6 -1.8 transcriptional regulator compare
Atu3429 -0.6 -1.1 hypothetical protein compare
Atu1241 -0.6 -1.7 hypothetical protein compare
Atu1566 -0.6 -0.8 hypothetical protein compare
Atu0520 -0.6 -2.2 chemotaxis receiver protein compare
Atu1707 -0.6 -3.6 hypothetical protein compare
Atu1904 -0.6 -2.5 transcriptional regulator compare
Atu2682 -0.6 -2.3 hypothetical protein compare
Atu0769 -0.6 -0.9 protoheme IX farnesyltransferase compare
Atu0036 -0.6 -2.1 hypothetical protein compare
Atu1513 -0.6 -3.0 ABC excinuclease subunit A compare
Atu1175 -0.6 -1.2 hypothetical protein compare
Atu0544 -0.6 -1.5 hypothetical protein compare
Atu0049 -0.6 -1.5 hypothetical protein compare
Atu0153 -0.6 -2.7 transcriptional regulator, Fur family compare
Atu0339 -0.6 -2.2 hypothetical protein compare
Atu0658 -0.6 -3.4 phosphate permease compare
Atu0115 -0.6 -0.8 hypothetical protein compare
Atu1838 -0.6 -2.2 ABC transporter, substrate binding protein (amino acid) compare
Atu3022 -0.6 -3.7 sugar ABC transporter permease compare
Atu4610 -0.6 -3.8 sugar nucleotide epimerase/dehydratase compare
Atu2798 -0.6 -2.4 precorrin-6y methyltransferase compare
Atu2807 -0.6 -3.0 cob(I)alamin adenosyltransferase compare
Atu2193 -0.6 -0.7 hypothetical protein compare
Atu1836 -0.6 -1.3 hypothetical protein compare
Atu8020 -0.6 -2.4 hypothetical protein compare
Atu1344 -0.6 -1.6 hypothetical protein compare
Atu3019 -0.6 -3.1 hypothetical protein compare
Atu0062 -0.6 -3.2 transcriptional regulator, ROK family compare
Atu1066 -0.6 -2.9 hypothetical protein compare
Atu2044 -0.6 -2.3 HFLC protein compare
Atu3712 -0.6 -0.9 hypothetical protein compare
Atu0328 -0.6 -3.6 heat-inducible transcription repressor compare
Atu8093 -0.6 -2.9 hypothetical protein compare
Atu1019 -0.6 -1.6 hypothetical protein compare
Atu4893 -0.6 -2.3 hypothetical protein compare
Atu4879 -0.6 -3.4 hypothetical protein compare
Atu0895 -0.6 -1.2 ABC transporter, substrate binding protein compare
Atu4875 -0.6 -2.8 hypothetical protein compare
Atu1364 -0.5 -2.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4068 -0.5 -1.9 sarcosine oxidase delta subunit compare
Atu1891 -0.5 -1.8 cobalamin biosynthesis protein compare
Atu1021 -0.5 -1.4 outer membrane protein compare
Atu3030 -0.5 -2.3 hypothetical protein compare
Atu2073 -0.5 -2.5 membrane protein compare
Atu0773 -0.5 -2.6 surfeit 1 compare
Atu3707 -0.5 -1.5 phosphoserine aminotransferase compare
Atu0535 -0.5 -2.3 hypothetical protein compare
Atu3809 -0.5 -3.6 oxidoreductase compare
Atu4889 -0.5 -2.5 hypothetical protein compare
Atu8167 -0.5 -3.2 putative transmembrane protein compare
Atu8138 -0.5 -1.1 hypothetical protein compare
Atu0640 -0.5 -1.5 hypothetical protein compare
Atu1285 -0.5 -2.2 metal dependent hydrolase compare
Atu4880 -0.5 -3.6 AraC family transcriptional regulator compare
Atu0422 -0.5 -1.3 ABC transporter, membrane spanning protein compare
Atu2773 -0.5 -2.7 hypothetical protein compare
Atu3016 -0.5 -2.7 phosphoglyceromutase compare
Atu4050 -0.5 -1.7 UTP-glucose-1-phosphate uridylyltransferase compare
Atu3029 -0.5 -3.3 glucarate dehydratase compare
Atu0837 -0.5 -2.7 transcriptional regulator, MarR family compare
Atu3319 -0.5 -1.8 hypothetical protein compare
Atu4876 -0.5 -3.2 oxidoreductase compare
Atu8202 -0.5 -2.1 hypothetical protein compare
Atu0050 -0.5 -2.0 two component response regulator compare
Atu3023 -0.5 -3.8 sugar ABC transporter permease compare
Atu8197 -0.5 -2.4 NorF protein compare
Atu3815 -0.5 -3.0 GntR family transcriptional regulator compare
Atu2805 -0.5 -3.0 cobalamin synthesis protein compare
Atu1634 -0.5 -1.1 hypothetical protein compare
Atu2796 -0.5 -1.9 precorrin-4 C11-methyltransferase compare
Atu3025 -0.5 -3.9 oligo alginate lyase compare
Atu2020 -0.5 -2.1 transcriptional regulator, TetR family compare
Atu1417 -0.5 -3.0 enoyl-CoA hydratase compare
Atu4866 -0.5 -3.0 hypothetical protein compare
Atu1734 -0.5 -1.3 hypothetical protein compare
Atu8161 -0.5 -0.8 hypothetical protein compare
Atu8158 -0.5 -1.7 hypothetical protein compare
Atu0785 -0.5 -1.6 ribosomal-protein (S5)-alanine N-acetyltransferase compare
Atu2271 -0.5 -1.7 urease accessory protein compare
Atu3020 -0.5 -2.7 GntR family transcriptional regulator compare
Atu1846 -0.5 -1.0 hypothetical protein compare
Atu4887 -0.5 -1.5 hypothetical protein compare
Atu4872 -0.5 -3.3 LysR family transcriptional regulator compare
Atu3115 -0.5 -2.8 TetR family transcriptional regulator compare
Atu4026 -0.5 -2.4 hypothetical protein compare
Atu0319 -0.5 -0.7 ubiquinone biosynthesis protein compare
Atu2293 -0.5 -0.9 hypothetical protein compare
Atu6153 -0.5 -1.9 conserved hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Acetosyringone in Agrobacterium fabrum C58

For stress Acetosyringone across organisms