Experiment set11IT032 for Agrobacterium fabrum C58

Compare to:

LB with Acetosyringone 5 mM

200 most important genes:

  gene name fitness t score description  
Atu6098 -2.4 -3.4 transcriptional regulator, HTH family compare
Atu3469 -2.3 -4.0 phosphoglyceromutase compare
Atu3012 -2.3 -2.5 hypothetical protein compare
Atu3763 -2.1 -2.0 hypothetical protein compare
Atu1030 -1.9 -2.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4148 -1.8 -4.0 UDP-glucuronic acid epimerase compare
Atu0784 -1.8 -4.3 hypothetical protein compare
Atu2439 -1.7 -2.5 hypothetical protein compare
Atu2787 -1.7 -2.0 hypothetical protein compare
Atu2584 -1.7 -6.0 hypothetical protein compare
Atu1327 -1.7 -4.4 NADH-ubiquinone oxidoreductase compare
Atu2306 -1.6 -7.8 methionine aminopeptidase compare
Atu2577 -1.6 -12.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu6131 -1.6 -8.0 TraR Antiactivator compare
Atu2592 -1.6 -5.9 hypothetical protein compare
Atu2585 -1.5 -5.5 hypothetical protein compare
Atu2590 -1.5 -7.7 hypothetical protein compare
Atu0912 -1.5 -2.0 Na+/H+ antiporter compare
Atu2591 -1.4 -7.3 glucosyltransferase compare
Atu2583 -1.4 -9.2 glycosyltransferase compare
Atu1446 -1.4 -2.4 two component response regulator compare
Atu4149 -1.4 -8.4 UDP-glucose 6-dehydrogenase compare
Atu1225 -1.3 -2.0 hypothetical protein compare
Atu1364 -1.3 -5.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1739 -1.3 -4.7 permease compare
Atu4072 -1.3 -2.1 nodulation protein N compare
Atu2692 -1.3 -4.3 intracellular septation protein compare
Atu1683 -1.3 -2.9 hypothetical protein compare
Atu0777 -1.3 -1.3 hypothetical protein compare
Atu2207 -1.2 -2.6 two component sensor kinase compare
Atu2582 -1.2 -5.7 UDP-glucose/GDP-mannose dehydrogenase compare
Atu4610 -1.1 -6.6 sugar nucleotide epimerase/dehydratase compare
Atu4773 -1.1 -1.7 two component response regulator compare
Atu1333 -1.1 -2.6 outer membrane protein compare
Atu0142 -1.0 -3.3 cytochrome o ubiquinol oxidase subunit II compare
Atu0977 -1.0 -2.9 serine protease DO-like protease compare
Atu1354 -1.0 -1.5 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0999 -1.0 -4.6 magnesium transport protein compare
Atu3183 -1.0 -1.0 hypothetical protein compare
Atu8159 -1.0 -2.5 hypothetical protein compare
Atu0319 -1.0 -1.4 ubiquinone biosynthesis protein compare
Atu0941 -1.0 -1.1 hypothetical protein compare
Atu1850 -0.9 -3.3 phosphoribosylformylglycinamidine synthetase II compare
Atu3598 -0.9 -1.9 thiol:disulfide interchange protein compare
Atu2249 -0.9 -1.2 hypothetical protein compare
Atu0040 -0.9 -0.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0031 -0.9 -1.4 PTS system, IIA component compare
Atu0030 -0.9 -1.7 phosphocarrier protein HPr compare
Atu0190 -0.9 -5.1 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3429 -0.9 -1.4 hypothetical protein compare
Atu2052 -0.9 -4.8 hypothetical protein compare
Atu2044 -0.9 -5.1 HFLC protein compare
Atu0689 -0.9 -5.7 ribosomal large subunit pseudouridine synthase B compare
Atu8096 -0.9 -1.7 hypothetical protein compare
Atu3519 -0.9 -4.8 peptidyl-prolyl cis-trans isomerase compare
Atu0115 -0.9 -1.1 hypothetical protein compare
Atu1140 -0.9 -2.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0837 -0.9 -4.2 transcriptional regulator, MarR family compare
Atu2824 -0.8 -2.9 hypothetical protein compare
Atu8095 -0.8 -4.5 hypothetical protein compare
Atu0269 -0.8 -2.9 exodeoxyribonuclease VII large subunit compare
Atu0188 -0.8 -2.4 ABC transporter, membrane spanning protein (peptide) compare
Atu1307 -0.8 -3.8 dihydroorotase compare
Atu0780 -0.8 -4.5 hypothetical protein compare
Atu4217 -0.8 -1.2 TetR family transcriptional regulator compare
Atu0189 -0.8 -2.3 ABC transporter, membrane spanning protein (peptide) compare
Atu2045 -0.8 -3.4 HFLK protein compare
Atu4425 -0.8 -3.6 inosine-uridine preferring nucleoside hydrolase compare
Atu3910 -0.8 -3.3 LamB/YcsF family protein compare
Atu0971 -0.8 -2.4 two component sensor kinase compare
Atu1099 -0.7 -4.1 hypothetical protein compare
Atu1131 -0.7 -3.7 outer membrane protein compare
Atu8087 -0.7 -0.9 putative peptidoglycan binding protein compare
Atu3249 -0.7 -4.0 septum formation inhibitor compare
Atu0486 -0.7 -3.0 dihydroorotate dehydrogenase compare
Atu0328 -0.7 -4.4 heat-inducible transcription repressor compare
Atu2304 -0.7 -4.0 bacteroid development protein compare
Atu0769 -0.7 -1.1 protoheme IX farnesyltransferase compare
Atu1242 -0.7 -4.0 cytochrome oxidase assembly factor compare
Atu1056 -0.7 -3.6 hypothetical protein compare
Atu0101 -0.7 -1.7 cytochrome c compare
Atu3518 -0.7 -3.8 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu0923 -0.7 -2.8 hypothetical protein compare
Atu4418 -0.7 -3.0 glutaryl-CoA dehydrogenase compare
Atu0434 -0.7 -1.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1163 -0.7 -1.7 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu3754 -0.7 -4.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu4890 -0.7 -1.3 IS426 transposase compare
Atu1308 -0.7 -3.1 aspartate carbamoyl transferase catalytic subunit compare
Atu0400 -0.7 -2.7 orotate phosphoribosyltransferase compare
Atu0533 -0.6 -0.7 putative inhibitor of septum formation compare
Atu0361 -0.6 -1.4 transcriptional regulator compare
Atu2217 -0.6 -3.0 hypothetical protein compare
Atu4618 -0.6 -4.0 dTDP-rhamnose-3,5-epimerase compare
Atu4077 -0.6 -4.3 glycogen branching protein compare
Atu6114 -0.6 -3.2 hypothetical protein compare
Atu1726 -0.6 -2.1 hypothetical protein compare
Atu0580 -0.6 -1.3 flagellar biosynthetic protein compare
Atu1838 -0.6 -2.1 ABC transporter, substrate binding protein (amino acid) compare
Atu1175 -0.6 -1.2 hypothetical protein compare
Atu1359 -0.6 -0.8 dnaK deletion suppressor protein compare
Atu4888 -0.6 -2.5 hypothetical protein compare
Atu1253 -0.6 -2.6 hypothetical protein compare
Atu0479 -0.6 -3.7 ABC transporter, substrate binding protein (amino acid) compare
Atu1286 -0.6 -2.7 hypothetical protein compare
Atu1645 -0.6 -3.0 ABC transporter, substrate binding protein compare
Atu1774 -0.6 -3.3 ABC transporter, substrate binding protein (peptide) compare
Atu2728 -0.6 -2.4 beta (1-->2) glucan export ATP-binding protein compare
Atu1646 -0.6 -2.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu8167 -0.6 -3.8 putative transmembrane protein compare
Atu0926 -0.6 -3.1 hypothetical protein compare
Atu1005 -0.6 -2.1 hypothetical protein compare
Atu1467 -0.6 -1.7 hypothetical protein compare
Atu4469 -0.6 -2.5 iron ABC transporter permease compare
Atu0690 -0.6 -1.4 hypothetical protein compare
Atu3719 -0.6 -3.3 MutT/nudix family protein compare
Atu0138 -0.6 -3.6 surfeit 1 compare
Atu1086 -0.6 -4.3 MFS permease compare
Atu3336 -0.6 -1.1 hypothetical protein compare
Atu0598 -0.6 -2.6 phosphogluconate dehydratase compare
Atu3427 -0.5 -2.1 hypothetical protein compare
Atu2237 -0.5 -2.5 cytochrome c1 compare
Atu8181 -0.5 -1.5 hypothetical protein compare
Atu0876 -0.5 -1.1 superoxide dismutase compare
Atu1644 -0.5 -1.8 hypothetical protein compare
Atu4099 -0.5 -2.4 hypothetical protein compare
Atu1801 -0.5 -1.4 hypothetical protein compare
Atu4616 -0.5 -0.9 dTDP-4-dehydrorhamnose reductase compare
Atu2662 -0.5 -0.9 acetyltransferase compare
Atu3755 -0.5 -2.2 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2073 -0.5 -2.2 membrane protein compare
Atu0641 -0.5 -2.1 hypothetical protein compare
Atu2827 -0.5 -1.9 hypothetical protein compare
Atu1026 -0.5 -1.2 hypothetical protein compare
Atu2825 -0.5 -3.0 Sun protein compare
Atu0340 -0.5 -1.3 SAM dependent methyltransferase compare
Atu0141 -0.5 -0.9 cytochrome O ubiquinol oxidase subunit I compare
Atu2620 -0.5 -0.9 hypothetical protein compare
Atu0802 -0.5 -3.3 hypothetical protein compare
Atu8165 -0.5 -1.3 hypothetical protein compare
Atu8133 -0.5 -1.9 hypothetical protein compare
Atu0331 -0.5 -1.5 sigma-54 modulation protein compare
Atu3730 -0.5 -0.9 hypothetical protein compare
Atu1204 -0.5 -2.5 potassium uptake protein compare
Atu2113 -0.5 -1.7 N-acetylmuramoyl-L-alanine amidase compare
Atu1708 -0.5 -2.2 hypothetical protein compare
Atu0687 -0.5 -1.4 hypothetical protein compare
Atu1511 -0.5 -1.5 hypothetical protein compare
Atu3911 -0.5 -2.4 hypothetical protein compare
Atu1667 -0.5 -1.1 hypothetical protein compare
Atu4538 -0.5 -3.2 3-carboxy-cis,cis-muconate cycloisomerase compare
Atu1085 -0.5 -2.3 transcriptional regulator, MarR family compare
Atu1291 -0.5 -1.2 hypothetical protein compare
Atu4026 -0.5 -2.9 hypothetical protein compare
Atu1380 -0.5 -2.1 zinc metallopeptidase compare
Atu8162 -0.5 -0.8 hypothetical protein compare
Atu1750 -0.5 -1.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu1469 -0.5 -0.9 hypothetical protein compare
Atu2555 -0.5 -1.6 L-lysine 2,3-aminomutase compare
Atu1614 -0.5 -3.1 phosphoglycolate phosphatase compare
Atu2672 -0.5 -2.6 hypothetical protein compare
Atu0528 -0.5 -2.3 large conductance mechanosensitive channel protein compare
Atu4213 -0.5 -2.0 hypothetical protein compare
Atu3798 -0.5 -2.3 TetR family transcriptional regulator compare
Atu4200 -0.5 -1.5 hypothetical protein compare
Atu4879 -0.5 -2.6 hypothetical protein compare
Atu1373 -0.5 -3.0 hypothetical protein compare
Atu0886 -0.5 -0.9 hypothetical protein compare
Atu1254 -0.5 -0.9 transcriptional regulator, ArsR family compare
Atu3122 -0.5 -1.5 cold shock protein compare
Atu0759 -0.5 -3.0 hypothetical protein compare
Atu2768 -0.4 -1.8 hypothetical protein compare
Atu2484 -0.4 -0.9 hypothetical protein compare
Atu1229 -0.4 -2.1 hypothetical protein compare
Atu4470 -0.4 -2.3 iron ABC transporter ATPase compare
Atu0298 -0.4 -2.4 orotidine 5 compare
Atu2773 -0.4 -2.4 hypothetical protein compare
Atu0647 -0.4 -2.0 phosphoribosylamine--glycine ligase compare
Atu1447 -0.4 -1.2 two component sensor kinase compare
Atu2072 -0.4 -1.9 ribosomal protein L11 methyltransferase compare
Atu1110 -0.4 -1.4 cytosol aminopeptidase compare
Atu1845 -0.4 -1.6 phosphoribosylformylglycinamidine synthase I compare
Atu3001 -0.4 -0.7 hypothetical protein compare
Atu1624 -0.4 -2.0 transcriptional regulator, TetR family compare
Atu0353 -0.4 -2.8 acetyltransferase compare
Atu1513 -0.4 -2.2 ABC excinuclease subunit A compare
Atu0801 -0.4 -3.1 chromosome segregation protein compare
Atu0001 -0.4 -2.8 hypothetical protein compare
Atu1074 -0.4 -3.4 NAD/NADP dependent oxidoreductase compare
Atu3486 -0.4 -1.1 DeoR family transcriptional regulator compare
Atu4540 -0.4 -1.3 protocatechuate 3,4-dioxygenase subunit beta compare
Atu2640 -0.4 -1.5 hypothetical protein compare
Atu3779 -0.4 -2.5 lytic murein transglycosylase compare
Atu3009 -0.4 -0.5 exopolysaccharide production protein compare
Atu8019 -0.4 -1.6 hypothetical protein compare
Atu2238 -0.4 -2.1 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu3203 -0.4 -2.6 RND multidrug efflux membrane permease compare
Atu1847 -0.4 -0.9 hypothetical protein compare
Atu4782 -0.4 -2.1 two component response regulator compare
Atu3886 -0.4 -2.3 lysophospholipase compare


Specific Phenotypes

For 1 genes in this experiment

For stress Acetosyringone in Agrobacterium fabrum C58

For stress Acetosyringone across organisms