Experiment set11IT031 for Agrobacterium fabrum C58

Compare to:

LB with Acetosyringone 5 mM

200 most important genes:

  gene name fitness t score description  
Atu6098 -3.5 -3.2 transcriptional regulator, HTH family compare
Atu3763 -2.4 -2.3 hypothetical protein compare
Atu0912 -2.0 -2.6 Na+/H+ antiporter compare
Atu3469 -2.0 -3.8 phosphoglyceromutase compare
Atu0971 -1.9 -5.1 two component sensor kinase compare
Atu1327 -1.8 -5.2 NADH-ubiquinone oxidoreductase compare
Atu0784 -1.8 -4.3 hypothetical protein compare
Atu2439 -1.8 -2.3 hypothetical protein compare
Atu2207 -1.8 -2.7 two component sensor kinase compare
Atu1030 -1.8 -2.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0331 -1.6 -2.3 sigma-54 modulation protein compare
Atu1446 -1.5 -2.9 two component response regulator compare
Atu0030 -1.4 -2.4 phosphocarrier protein HPr compare
Atu0040 -1.4 -1.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4148 -1.4 -5.2 UDP-glucuronic acid epimerase compare
Atu2577 -1.4 -10.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu2590 -1.3 -6.7 hypothetical protein compare
Atu1359 -1.3 -1.4 dnaK deletion suppressor protein compare
Atu1175 -1.3 -2.1 hypothetical protein compare
Atu6131 -1.2 -7.3 TraR Antiactivator compare
Atu2592 -1.2 -5.6 hypothetical protein compare
Atu2584 -1.2 -4.6 hypothetical protein compare
Atu2585 -1.2 -5.5 hypothetical protein compare
Atu4149 -1.2 -7.8 UDP-glucose 6-dehydrogenase compare
Atu2692 -1.1 -4.4 intracellular septation protein compare
Atu8095 -1.1 -6.4 hypothetical protein compare
Atu2591 -1.1 -4.8 glucosyltransferase compare
Atu4610 -1.1 -6.4 sugar nucleotide epimerase/dehydratase compare
Atu4616 -1.1 -1.9 dTDP-4-dehydrorhamnose reductase compare
Atu2582 -1.1 -4.7 UDP-glucose/GDP-mannose dehydrogenase compare
Atu0687 -1.0 -2.2 hypothetical protein compare
Atu2824 -1.0 -3.4 hypothetical protein compare
Atu4072 -1.0 -1.8 nodulation protein N compare
Atu2583 -1.0 -7.1 glycosyltransferase compare
Atu2045 -1.0 -4.3 HFLK protein compare
Atu2217 -0.9 -4.4 hypothetical protein compare
Atu3598 -0.9 -2.2 thiol:disulfide interchange protein compare
Atu1364 -0.9 -3.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1699 -0.9 -1.7 molybdopterin-guanine dinucleotide biosynthesis protein B compare
Atu1619 -0.9 -2.4 protein-export membrane protein SECG compare
Atu2306 -0.9 -3.8 methionine aminopeptidase compare
Atu2044 -0.8 -4.7 HFLC protein compare
Atu0585 -0.8 -2.8 hypothetical protein compare
Atu2057 -0.8 -2.1 DNA helicase II compare
Atu1739 -0.8 -3.1 permease compare
Atu3727 -0.8 -2.7 hypothetical protein compare
Atu2052 -0.8 -4.7 hypothetical protein compare
Atu3519 -0.8 -4.5 peptidyl-prolyl cis-trans isomerase compare
Atu3739 -0.8 -2.3 phosphoglycerate kinase compare
Atu1683 -0.8 -2.1 hypothetical protein compare
Atu2728 -0.8 -3.1 beta (1-->2) glucan export ATP-binding protein compare
Atu1644 -0.8 -2.3 hypothetical protein compare
Atu0769 -0.8 -1.3 protoheme IX farnesyltransferase compare
Atu0638 -0.8 -2.5 hypothetical protein compare
Atu4026 -0.8 -4.6 hypothetical protein compare
Atu2084 -0.8 -0.9 hypothetical protein compare
Atu0999 -0.7 -4.4 magnesium transport protein compare
Atu4538 -0.7 -5.6 3-carboxy-cis,cis-muconate cycloisomerase compare
Atu0142 -0.7 -2.9 cytochrome o ubiquinol oxidase subunit II compare
Atu0138 -0.7 -4.1 surfeit 1 compare
Atu6114 -0.7 -2.7 hypothetical protein compare
Atu0780 -0.7 -4.2 hypothetical protein compare
Atu8138 -0.7 -1.4 hypothetical protein compare
Atu1836 -0.7 -1.1 hypothetical protein compare
Atu3730 -0.7 -1.2 hypothetical protein compare
Atu3754 -0.7 -2.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3517 -0.7 -3.9 acetyltransferase compare
Atu0598 -0.7 -4.0 phosphogluconate dehydratase compare
Atu0943 -0.7 -1.9 hypothetical protein compare
Atu2790 -0.7 -1.8 3-isopropylmalate dehydratase, small subunit compare
Atu0977 -0.7 -2.1 serine protease DO-like protease compare
Atu5160 -0.7 -1.7 transcriptional regulator protein compare
Atu4077 -0.7 -4.7 glycogen branching protein compare
Atu0630 -0.7 -2.0 hypothetical protein compare
Atu1103 -0.7 -2.2 rRNA-adenine N6,N6-dimethyltransferase compare
Atu3755 -0.7 -3.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0361 -0.7 -1.7 transcriptional regulator compare
Atu4217 -0.7 -0.9 TetR family transcriptional regulator compare
Atu5430 -0.6 -1.0 hypothetical protein compare
Atu0689 -0.6 -4.6 ribosomal large subunit pseudouridine synthase B compare
Atu1469 -0.6 -1.4 hypothetical protein compare
Atu1535 -0.6 -1.3 cytochrome c oxidase, FixQ chain compare
Atu2239 -0.6 -1.7 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu3798 -0.6 -3.5 TetR family transcriptional regulator compare
Atu4618 -0.6 -4.6 dTDP-rhamnose-3,5-epimerase compare
Atu2270 -0.6 -1.1 ATP-dependent Clp protease, proteolytic subunit compare
Atu2555 -0.6 -2.3 L-lysine 2,3-aminomutase compare
Atu4425 -0.6 -3.0 inosine-uridine preferring nucleoside hydrolase compare
Atu1679 -0.6 -1.8 peptidyl prolyl cis-trans isomerase compare
Atu4144 -0.6 -0.9 hypothetical protein compare
Atu2772 -0.6 -2.8 Invasion protein A compare
Atu4418 -0.6 -2.4 glutaryl-CoA dehydrogenase compare
Atu3910 -0.6 -2.6 LamB/YcsF family protein compare
Atu2662 -0.6 -0.9 acetyltransferase compare
Atu1333 -0.6 -2.1 outer membrane protein compare
Atu4763 -0.6 -2.9 AsnC family transcriptional regulator compare
Atu1722 -0.6 -1.4 hypothetical protein compare
Atu3712 -0.6 -0.8 hypothetical protein compare
Atu1753 -0.5 -3.9 hypothetical protein compare
Atu1968 -0.5 -1.3 hypothetical protein compare
Atu1645 -0.5 -2.9 ABC transporter, substrate binding protein compare
Atu0319 -0.5 -0.9 ubiquinone biosynthesis protein compare
Atu1216 -0.5 -2.4 alanyl-tRNA synthetase compare
Atu0422 -0.5 -1.2 ABC transporter, membrane spanning protein compare
Atu0939 -0.5 -1.3 PemI protein compare
Atu0269 -0.5 -2.2 exodeoxyribonuclease VII large subunit compare
Atu3468 -0.5 -0.6 hypothetical protein compare
Atu2304 -0.5 -3.1 bacteroid development protein compare
Atu2442 -0.5 -1.5 hypothetical protein compare
Atu1241 -0.5 -2.3 hypothetical protein compare
Atu1801 -0.5 -1.9 hypothetical protein compare
Atu0690 -0.5 -1.0 hypothetical protein compare
Atu4053 -0.5 -1.0 succinoglycan biosynthesis protein compare
Atu1021 -0.5 -1.1 outer membrane protein compare
Atu2073 -0.5 -1.8 membrane protein compare
Atu3429 -0.5 -0.9 hypothetical protein compare
Atu5088 -0.5 -1.5 hypothetical protein compare
Atu0777 -0.5 -0.6 hypothetical protein compare
Atu2683 -0.5 -1.0 hypothetical protein compare
Atu3884 -0.5 -2.8 hypothetical protein compare
Atu4099 -0.5 -2.6 hypothetical protein compare
Atu1242 -0.5 -2.7 cytochrome oxidase assembly factor compare
Atu1339 -0.5 -1.4 ribonuclease E compare
Atu1707 -0.5 -2.8 hypothetical protein compare
Atu3822 -0.5 -2.4 hypothetical protein compare
Atu1513 -0.5 -2.5 ABC excinuclease subunit A compare
Atu1344 -0.5 -1.3 hypothetical protein compare
Atu0049 -0.5 -1.5 hypothetical protein compare
Atu0572 -0.4 -1.0 hypothetical protein compare
Atu1163 -0.4 -1.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu6197 -0.4 -2.5 agrocinopine phosphodiesterase compare
Atu1361 -0.4 -2.3 hypothetical protein compare
Atu8194 -0.4 -2.0 hypothetical protein compare
Atu8158 -0.4 -1.4 hypothetical protein compare
Atu3183 -0.4 -0.6 hypothetical protein compare
Atu0115 -0.4 -0.7 hypothetical protein compare
Atu4541 -0.4 -2.3 carboxymuconolactone decarboxylase compare
Atu0257 -0.4 -2.5 hypothetical protein compare
Atu0976 -0.4 -1.7 cycL protein compare
Atu0051 -0.4 -2.3 two component sensor kinase compare
Atu8019 -0.4 -1.7 hypothetical protein compare
Atu1503 -0.4 -0.7 hypothetical protein compare
Atu0181 -0.4 -1.3 hypothetical protein compare
Atu1439 -0.4 -0.9 hypothetical protein compare
Atu0837 -0.4 -1.9 transcriptional regulator, MarR family compare
Atu2237 -0.4 -2.1 cytochrome c1 compare
Atu0668 -0.4 -2.0 hypothetical protein compare
Atu1131 -0.4 -3.0 outer membrane protein compare
Atu0771 -0.4 -2.8 cytochrome c oxidase subunit III compare
Atu1057 -0.4 -2.2 ADP-Ribose Pyrophosphatase compare
Atu3688 -0.4 -1.6 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu6036 -0.4 -1.2 entry-exclusion protein compare
Atu0093 -0.4 -1.5 Recombination protein compare
Atu1129 -0.4 -2.4 excinuclease ABC chain C compare
Atu1804 -0.4 -2.5 hypothetical protein compare
Atu0801 -0.4 -3.1 chromosome segregation protein compare
Atu2484 -0.4 -0.8 hypothetical protein compare
Atu2249 -0.4 -0.6 hypothetical protein compare
Atu5487 -0.4 -1.7 hypothetical protein compare
Atu2146 -0.4 -1.5 hypothetical protein compare
Atu3666 -0.4 -2.5 hypothetical protein compare
Atu1449 -0.4 -2.3 potassium uptake protein compare
Atu8159 -0.4 -1.5 hypothetical protein compare
Atu2083 -0.4 -1.6 DNA repair protein RecN compare
Atu2786 -0.4 -1.4 hypothetical protein compare
Atu0353 -0.4 -2.3 acetyltransferase compare
Atu2025 -0.4 -1.5 transcriptional regulator compare
Atu2773 -0.4 -2.3 hypothetical protein compare
Atu1005 -0.4 -1.7 hypothetical protein compare
Atu3793 -0.4 -3.3 aspartate ammonia-lyase compare
Atu3124 -0.4 -1.7 hypothetical protein compare
Atu6155 -0.4 -3.0 conserved hypothetical protein compare
Atu3197 -0.4 -2.7 LysR family transcriptional regulator compare
Atu1489 -0.4 -2.5 arsenical resistance protein compare
Atu1204 -0.4 -2.5 potassium uptake protein compare
Atu1647 -0.4 -2.5 ABC transporter, membrane spanning protein compare
Atu3890 -0.4 -2.0 glycerol kinase compare
Atu3486 -0.4 -1.3 DeoR family transcriptional regulator compare
Atu4151 -0.4 -2.0 LysR family transcriptional regulator compare
Atu0328 -0.4 -2.6 heat-inducible transcription repressor compare
Atu4574 -0.4 -1.7 dehydrogenase compare
Atu3747 -0.4 -2.9 hypothetical protein compare
Atu2770 -0.4 -1.6 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu3915 -0.4 -1.3 MerR family transcriptional regulator compare
Atu0001 -0.4 -2.3 hypothetical protein compare
Atu0938 -0.4 -1.1 transcriptional regulator, MerR family compare
Atu3579 -0.4 -1.2 lactoylglutathione lyase compare
Atu3248 -0.4 -2.0 cell division inhibitor compare
Atu0190 -0.4 -2.1 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3634 -0.4 -1.8 penicillin-binding protein dacf precursor compare
Atu0746 -0.4 -1.0 hypothetical protein compare
Atu2352 -0.4 -0.9 hypothetical protein compare
Atu3864 -0.4 -1.6 hypothetical protein compare
Atu2722 -0.4 -1.8 porin compare
Atu3911 -0.4 -1.7 hypothetical protein compare
Atu4200 -0.4 -0.7 hypothetical protein compare
Atu1176 -0.4 -1.4 hypothetical protein compare
Atu2815 -0.4 -2.1 hypothetical protein compare
Atu4078 -0.4 -2.8 glycogen phosphorylase compare
Atu4882 -0.4 -0.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Acetosyringone across organisms