Experiment set11IT029 for Agrobacterium fabrum C58

Compare to:

LB with Salicylic acid 0.5 mM

200 most important genes:

  gene name fitness t score description  
Atu0040 -2.4 -1.5 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4773 -1.5 -2.2 two component response regulator compare
Atu3009 -1.5 -1.7 exopolysaccharide production protein compare
Atu1446 -1.4 -2.2 two component response regulator compare
Atu2439 -1.2 -2.1 hypothetical protein compare
Atu3598 -1.1 -2.8 thiol:disulfide interchange protein compare
Atu0486 -1.1 -3.8 dihydroorotate dehydrogenase compare
Atu3469 -1.1 -2.2 phosphoglyceromutase compare
Atu3008 -1.1 -1.2 hypothetical protein compare
Atu0030 -1.1 -2.1 phosphocarrier protein HPr compare
Atu0399 -1.0 -4.9 dihydroorotase compare
Atu0086 -1.0 -1.2 ribosome-binding factor A compare
Atu0784 -1.0 -3.7 hypothetical protein compare
Atu0184 -1.0 -2.4 glucokinase compare
Atu0999 -1.0 -5.6 magnesium transport protein compare
Atu0141 -1.0 -1.8 cytochrome O ubiquinol oxidase subunit I compare
Atu0886 -0.9 -2.0 hypothetical protein compare
Atu4072 -0.9 -1.8 nodulation protein N compare
Atu2057 -0.9 -2.3 DNA helicase II compare
Atu3486 -0.9 -1.9 DeoR family transcriptional regulator compare
Atu2831 -0.9 -4.6 glucose inhibited division protein A compare
Atu1810 -0.9 -1.4 hypothetical protein compare
Atu8056 -0.8 -1.1 hypothetical protein compare
Atu2207 -0.8 -2.5 two component sensor kinase compare
Atu4077 -0.8 -6.0 glycogen branching protein compare
Atu0298 -0.8 -4.5 orotidine 5 compare
Atu8202 -0.8 -3.3 hypothetical protein compare
Atu2832 -0.8 -2.7 tRNA modification GTPase compare
Atu3019 -0.8 -4.8 hypothetical protein compare
Atu4317 -0.8 -2.6 TetR family transcriptional regulator compare
Atu2192 -0.8 -1.4 hypothetical protein compare
Atu0895 -0.8 -2.6 ABC transporter, substrate binding protein compare
Atu0422 -0.8 -1.2 ABC transporter, membrane spanning protein compare
Atu0331 -0.8 -2.1 sigma-54 modulation protein compare
Atu1308 -0.8 -4.0 aspartate carbamoyl transferase catalytic subunit compare
Atu4882 -0.8 -2.1 hypothetical protein compare
Atu0039 -0.7 -1.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu1846 -0.7 -1.6 hypothetical protein compare
Atu0142 -0.7 -1.9 cytochrome o ubiquinol oxidase subunit II compare
Atu4217 -0.7 -1.5 TetR family transcriptional regulator compare
Atu3121 -0.7 -1.2 cold shock protein compare
Atu2684 -0.7 -1.4 hypothetical protein compare
Atu0659 -0.7 -3.4 NTP pyrophosphohydrolase, MutT family compare
Atu1634 -0.7 -1.5 hypothetical protein compare
Atu3011 -0.7 -1.9 ArsR family transcriptional regulator compare
Atu0601 -0.7 -5.0 oxidoreductase compare
Atu1163 -0.7 -1.8 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu3429 -0.7 -1.3 hypothetical protein compare
Atu1667 -0.7 -1.6 hypothetical protein compare
Atu3468 -0.7 -0.8 hypothetical protein compare
Atu4888 -0.7 -2.9 hypothetical protein compare
Atu0566 -0.6 -1.8 hypothetical protein compare
Atu0400 -0.6 -2.6 orotate phosphoribosyltransferase compare
Atu2807 -0.6 -3.4 cob(I)alamin adenosyltransferase compare
Atu1683 -0.6 -2.1 hypothetical protein compare
Atu4686 -0.6 -2.0 hypothetical protein compare
Atu0971 -0.6 -2.4 two component sensor kinase compare
Atu1086 -0.6 -4.4 MFS permease compare
Atu1513 -0.6 -3.4 ABC excinuclease subunit A compare
Atu0049 -0.6 -2.3 hypothetical protein compare
Atu4078 -0.6 -5.2 glycogen phosphorylase compare
Atu2052 -0.6 -3.1 hypothetical protein compare
Atu4884 -0.6 -2.2 hypothetical protein compare
Atu2795 -0.6 -3.6 cobalamin biosynthetic protein compare
Atu2125 -0.6 -1.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu8170 -0.6 -1.7 hypothetical protein compare
Atu1344 -0.6 -1.6 hypothetical protein compare
Atu2381 -0.6 -2.2 hypothetical protein compare
Atu5115 -0.6 -1.3 hypothetical protein compare
Atu0419 -0.6 -1.5 two component sensor kinase compare
Atu1204 -0.6 -3.7 potassium uptake protein compare
Atu0319 -0.6 -1.0 ubiquinone biosynthesis protein compare
Atu1087 -0.6 -3.8 secretion protein compare
Atu2805 -0.6 -3.0 cobalamin synthesis protein compare
Atu2554 -0.6 -1.4 lysyl-tRNA synthetase compare
Atu0025 -0.6 -1.4 hypothetical protein compare
Atu3023 -0.6 -3.6 sugar ABC transporter permease compare
Atu2802 -0.6 -4.0 precorrin-8X methylmutase compare
Atu1739 -0.5 -2.6 permease compare
Atu0689 -0.5 -3.8 ribosomal large subunit pseudouridine synthase B compare
Atu4418 -0.5 -2.8 glutaryl-CoA dehydrogenase compare
Atu1891 -0.5 -2.0 cobalamin biosynthesis protein compare
Atu3727 -0.5 -2.3 hypothetical protein compare
Atu3739 -0.5 -1.8 phosphoglycerate kinase compare
Atu2801 -0.5 -2.5 precorrin-2 C20 methyltransferase compare
Atu0050 -0.5 -2.8 two component response regulator compare
Atu3016 -0.5 -2.9 phosphoglyceromutase compare
Atu4879 -0.5 -3.2 hypothetical protein compare
Atu1364 -0.5 -2.3 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2790 -0.5 -1.8 3-isopropylmalate dehydratase, small subunit compare
Atu8165 -0.5 -1.2 hypothetical protein compare
Atu6036 -0.5 -1.1 entry-exclusion protein compare
Atu2620 -0.5 -1.0 hypothetical protein compare
Atu2555 -0.5 -2.2 L-lysine 2,3-aminomutase compare
Atu0346 -0.5 -1.3 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3013 -0.5 -2.3 hypothetical protein compare
Atu2809 -0.5 -3.1 cobalamin biosynthesis protein compare
Atu0777 -0.5 -0.7 hypothetical protein compare
Atu2073 -0.5 -2.3 membrane protein compare
Atu4635 -0.5 -2.7 hypothetical protein compare
Atu0036 -0.5 -1.3 hypothetical protein compare
Atu0421 -0.5 -1.0 ABC transporter, membrane spanning protein compare
Atu1902 -0.5 -3.0 transketolase compare
Atu0769 -0.5 -1.0 protoheme IX farnesyltransferase compare
Atu2798 -0.5 -2.3 precorrin-6y methyltransferase compare
Atu0051 -0.5 -2.8 two component sensor kinase compare
Atu0361 -0.5 -1.4 transcriptional regulator compare
Atu4527 -0.5 -1.2 hypothetical protein compare
Atu3015 -0.5 -2.6 hypothetical protein compare
Atu0658 -0.5 -3.5 phosphate permease compare
Atu2662 -0.5 -0.5 acetyltransferase compare
Atu0340 -0.5 -1.1 SAM dependent methyltransferase compare
Atu2808 -0.5 -2.4 cobyric acid synthase compare
Atu0225 -0.5 -0.7 hypothetical protein compare
Atu4541 -0.5 -2.2 carboxymuconolactone decarboxylase compare
Atu4872 -0.5 -3.0 LysR family transcriptional regulator compare
Atu2824 -0.5 -1.8 hypothetical protein compare
Atu1677 -0.5 -1.7 queuine tRNA-ribosyltransferase compare
Atu4540 -0.5 -1.4 protocatechuate 3,4-dioxygenase subunit beta compare
Atu1217 -0.5 -3.2 cysteine synthase compare
Atu1701 -0.5 -1.2 protein-L-isoaspartate O-methyltransferase compare
Atu1759 -0.4 -3.0 L-serine dehydratase compare
Atu4615 -0.4 -2.9 glucose-1-phosphate thymidylyltransferase compare
Atu1030 -0.4 -1.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4889 -0.4 -2.0 hypothetical protein compare
Atu2072 -0.4 -2.0 ribosomal protein L11 methyltransferase compare
Atu1752 -0.4 -2.7 hypothetical protein compare
Atu0943 -0.4 -1.2 hypothetical protein compare
Atu2660 -0.4 -1.2 hypothetical protein compare
Atu3754 -0.4 -2.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1760 -0.4 -0.8 hypothetical protein compare
Atu3267 -0.4 -1.1 dipeptide ABC transporter permease compare
Atu3022 -0.4 -3.1 sugar ABC transporter permease compare
Atu1847 -0.4 -1.0 hypothetical protein compare
Atu2484 -0.4 -0.9 hypothetical protein compare
Atu2800 -0.4 -1.4 precorrin-3B C17-methyltransferase compare
Atu1679 -0.4 -1.3 peptidyl prolyl cis-trans isomerase compare
Atu2184 -0.4 -1.9 transcriptional regulator, AsnC family compare
Atu8029 -0.4 -1.0 hypothetical protein compare
Atu3688 -0.4 -2.2 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu1685 -0.4 -0.7 hypothetical protein compare
Atu3516 -0.4 -2.2 MutT family NTP pyrophosphatase compare
Atu2787 -0.4 -0.8 hypothetical protein compare
Atu3492 -0.4 -1.9 sugar kinase compare
Atu4880 -0.4 -2.6 AraC family transcriptional regulator compare
Atu3029 -0.4 -2.9 glucarate dehydratase compare
Atu4630 -0.4 -1.4 hypothetical protein compare
Atu1904 -0.4 -1.3 transcriptional regulator compare
Atu1680 -0.4 -2.6 peptidyl prolyl cis-trans isomerase compare
Atu4869 -0.4 -1.2 hypothetical protein compare
Atu1077 -0.4 -1.5 DNA repair protein compare
Atu0941 -0.4 -0.6 hypothetical protein compare
Atu3757 -0.4 -1.6 hypothetical protein compare
Atu4877 -0.4 -2.9 short-chain dehydrogenase compare
Atu8162 -0.4 -0.9 hypothetical protein compare
Atu4873 -0.4 -1.6 TetR family transcriptional regulator compare
Atu1110 -0.4 -1.2 cytosol aminopeptidase compare
Atu2799 -0.4 -1.5 precorrin-6x reductase compare
Atu4425 -0.4 -2.0 inosine-uridine preferring nucleoside hydrolase compare
Atu3792 -0.4 -2.8 L-asparagine permease compare
Atu3864 -0.4 -1.5 hypothetical protein compare
Atu0491 -0.4 -1.8 hypothetical protein compare
Atu2803 -0.4 -1.6 Cobalamin biosynthesis associated protein compare
Atu1638 -0.4 -2.5 hypothetical protein compare
Atu4613 -0.4 -3.0 glycosyltransferase compare
Atu3392 -0.4 -1.5 methyltransferase compare
Atu0912 -0.4 -0.9 Na+/H+ antiporter compare
Atu0467 -0.4 -1.2 hypothetical protein compare
Atu2804 -0.4 -2.9 cobaltochelatase subunit compare
Atu3018 -0.4 -1.7 hypothetical protein compare
Atu1043 -0.4 -2.2 hypothetical protein compare
Atu3744 -0.4 -2.9 ABC transporter permease compare
Atu4874 -0.4 -2.7 hypothetical protein compare
Atu3265 -0.4 -1.9 hypothetical protein compare
Atu0815 -0.4 -1.1 hypothetical protein compare
Atu0031 -0.4 -0.8 PTS system, IIA component compare
Atu2083 -0.4 -1.8 DNA repair protein RecN compare
Atu4875 -0.4 -1.9 hypothetical protein compare
Atu1501 -0.4 -1.9 hypothetical protein compare
Atu1038 -0.4 -1.5 two component response regulator compare
Atu0771 -0.4 -2.4 cytochrome c oxidase subunit III compare
Atu4329 -0.4 -2.0 polysaccharide export protein compare
Atu1028 -0.4 -0.9 hypothetical protein compare
Atu4870 -0.4 -2.9 NADP-dependent quinone oxidoreductase compare
Atu4876 -0.4 -2.8 oxidoreductase compare
Atu1546 -0.4 -1.7 transcriptional regulator, MerR family compare
Atu3020 -0.4 -2.3 GntR family transcriptional regulator compare
Atu3521 -0.4 -1.3 permease compare
Atu3280 -0.4 -1.8 GntR family transcriptional regulator compare
Atu0843 -0.4 -3.2 P type cation (metal) transporter, ATPase component compare
Atu1484 -0.4 -1.6 transcriptional regulator compare
Atu0166 -0.4 -1.5 hypothetical protein compare
Atu2462 -0.4 -1.3 hypothetical protein compare
Atu1463 -0.4 -1.3 glycine cleavage system component H compare
Atu1619 -0.4 -1.0 protein-export membrane protein SECG compare
Atu1219 -0.4 -0.5 hypothetical protein compare
Atu1678 -0.4 -2.0 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu3814 -0.4 -2.4 hypothetical protein compare
Atu0477 -0.4 -0.8 hypothetical protein compare
Atu3999 -0.3 -1.2 dithiobiotin synthetase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Salicylic acid across organisms