Experiment set11IT020 for Agrobacterium fabrum C58

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Phloretic Acid carbon source

200 most important genes:

  gene name fitness t score description  
Atu1844 -6.6 -4.6 Phosphoribosylformylglycinamidine synthetase compare
Atu0099 -6.2 -12.6 prephenate dehydratase compare
Atu3707 -6.1 -4.2 phosphoserine aminotransferase compare
Atu1845 -6.1 -7.2 phosphoribosylformylglycinamidine synthase I compare
Atu2791 -6.0 -9.7 3-isopropylmalate dehydrogenase compare
Atu0038 -5.9 -7.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2289 -5.9 -18.1 anthranilate synthase component I and II compare
Atu1417 -5.9 -9.8 enoyl-CoA hydratase compare
Atu1750 -5.8 -8.5 phosphoribosyl c-AMP cyclohydrolase compare
Atu2264 -5.7 -14.3 2-isopropylmalate synthase compare
Atu1850 -5.7 -5.9 phosphoribosylformylglycinamidine synthetase II compare
Atu1687 -5.7 -11.6 anthranilate phosphoribosyltransferase compare
Atu2650 -5.7 -15.2 glycerol-3-phosphate dehydrogenase compare
Atu0537 -5.6 -6.6 histidinol dehydrogenase compare
Atu3754 -5.4 -6.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0536 -5.3 -9.6 hypothetical protein compare
Atu3739 -5.3 -3.2 phosphoglycerate kinase compare
Atu1588 -5.3 -10.2 homoserine dehydrogenase compare
Atu1688 -5.3 -6.3 indole-3-glycerol-phosphate synthase compare
Atu0803 -5.2 -20.8 pyruvate,orthophosphate dikinase compare
Atu3706 -5.2 -10.0 D-3-phosphoglycerate dehydrogenase compare
Atu2036 -5.2 -16.8 acetolactate synthase III, large subunit compare
Atu2709 -5.1 -20.4 3-isopropylmalate dehydratase, large subunit compare
Atu0041 -5.0 -3.5 glutamine amidotransferase compare
Atu2718 -5.0 -10.2 homoserine O-succinyltransferase compare
Atu1307 -5.0 -10.5 dihydroorotase compare
Atu2790 -4.9 -2.8 3-isopropylmalate dehydratase, small subunit compare
Atu1030 -4.9 -3.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0043 -4.8 -3.3 imidazoleglycerol-phosphate dehydratase compare
Atu1359 -4.8 -2.1 dnaK deletion suppressor protein compare
Atu0679 -4.7 -7.2 ATP phosphoribosyltransferase compare
Atu1620 -4.7 -13.6 triosephosphate isomerase compare
Atu0399 -4.7 -10.5 dihydroorotase compare
Atu0035 -4.7 -14.8 phosphoenolpyruvate carboxykinase compare
Atu0432 -4.7 -9.9 O-succinylhomoserine sulfhydrylase compare
Atu3740 -4.5 -13.3 fructose bisphosphate aldolase compare
Atu1140 -4.5 -5.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3469 -4.5 -3.1 phosphoglyceromutase compare
Atu2040 -4.5 -6.1 phosphoserine phosphatase compare
Atu0017 -4.5 -5.3 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1308 -4.4 -9.4 aspartate carbamoyl transferase catalytic subunit compare
Atu0678 -4.4 -8.4 histidyl-tRNA synthetase compare
Atu0400 -4.4 -8.3 orotate phosphoribosyltransferase compare
Atu1141 -4.3 -9.1 Phosphoribosylglycinamide synthetase compare
Atu1075 -4.3 -9.9 amidophosphoribosyltransferase compare
Atu4505 -4.3 -11.7 LacI family transcriptional regulator compare
Atu0647 -4.2 -8.3 phosphoribosylamine--glycine ligase compare
Atu0607 -4.2 -21.3 isocitrate lyase compare
Atu0608 -4.2 -16.5 transcriptional regulator compare
Atu0047 -4.2 -17.4 malate synthase G compare
Atu3755 -4.2 -6.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3885 -4.2 -12.2 inositol monophosphatase compare
Atu0039 -4.1 -3.9 imidazoleglycerol-phosphate synthase cyclase compare
Atu3482 -4.0 -10.0 pantoate--beta-alanine ligase compare
Atu1205 -3.8 -15.4 threonine dehydratase compare
Atu0298 -3.8 -11.6 orotidine 5 compare
Atu0030 -3.7 -2.8 phosphocarrier protein HPr compare
Atu0486 -3.4 -8.6 dihydroorotate dehydrogenase compare
Atu0040 -3.3 -2.0 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2155 -3.3 -20.0 methionine synthase compare
Atu6098 -3.2 -2.0 transcriptional regulator, HTH family compare
Atu3731 -3.2 -11.4 5-formyltetrahydrofolate cyclo-ligase compare
Atu1421 -3.1 -9.6 hypothetical protein compare
Atu2015 -3.0 -14.3 aminotransferase compare
Atu1415 -3.0 -9.9 3-hydroxyacyl-CoA dehydrogenase type II compare
Atu3783 -3.0 -18.3 glutamate synthase subunit beta compare
Atu2225 -2.9 -11.9 transcriptional regulator compare
Atu3784 -2.9 -22.7 glutamate synthase large subunit compare
Atu2745 -2.8 -17.4 acetyl-coenzyme A synthetase compare
Atu1414 -2.8 -13.3 acyl-CoA dehydrogenase compare
Atu4541 -2.8 -5.5 carboxymuconolactone decarboxylase compare
Atu3483 -2.5 -6.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu4542 -2.3 -11.0 beta-ketoadipate enol-lactone hydrolase compare
Atu4538 -2.2 -11.1 3-carboxy-cis,cis-muconate cycloisomerase compare
Atu2115 -2.2 -9.3 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1462 -2.0 -13.4 glycine cleavage system protein P2 compare
Atu1463 -1.9 -8.7 glycine cleavage system component H compare
Atu0029 -1.9 -7.1 S-adenosylhomocysteine hydrolase compare
Atu0807 -1.9 -8.8 metallo-beta-lactamase superfamily protein compare
Atu0606 -1.9 -4.0 hypothetical protein compare
Atu2125 -1.9 -2.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu0062 -1.9 -8.8 transcriptional regulator, ROK family compare
Atu2205 -1.9 -6.4 transcriptional regulator, MarR family compare
Atu4547 -1.8 -10.1 3-oxoadipate CoA-transferase subunit A compare
Atu1589 -1.8 -7.1 aminotransferase, class I compare
Atu2237 -1.8 -6.6 cytochrome c1 compare
Atu4548 -1.8 -9.5 3-oxoadipate CoA-transferase subunit B compare
Atu4773 -1.7 -1.5 two component response regulator compare
Atu1464 -1.7 -6.1 glycine cleavage system T protein, aminomethyltransferase compare
Atu4549 -1.7 -8.9 beta-ketoadipyl CoA thiolase compare
Atu1286 -1.7 -6.5 hypothetical protein compare
Atu4711 -1.6 -5.1 two component sensor kinase compare
Atu4317 -1.6 -5.7 TetR family transcriptional regulator compare
Atu3486 -1.6 -3.4 DeoR family transcriptional regulator compare
Atu0031 -1.6 -1.9 PTS system, IIA component compare
Atu1422 -1.6 -6.1 transcriptional regulator, MarR family compare
Atu2238 -1.6 -8.1 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1028 -1.6 -4.1 hypothetical protein compare
Atu6114 -1.5 -1.3 hypothetical protein compare
Atu3730 -1.5 -1.1 hypothetical protein compare
Atu3963 -1.5 -6.9 GntR family transcriptional regulator compare
Atu4096 -1.5 -7.6 nicotinate-nucleotide pyrophosphorylase compare
Atu4685 -1.5 -6.7 LacI family transcriptional regulator compare
Atu2239 -1.5 -4.8 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu2252 -1.4 -8.9 hypothetical protein conserved
Atu0768 -1.4 -10.2 cytochrome-c oxidase chain I compare
Atu2684 -1.4 -3.3 hypothetical protein compare
Atu0663 -1.4 -10.6 hypothetical protein compare
Atu3337 -1.4 -6.7 LacI family transcriptional regulator compare
Atu4098 -1.3 -7.6 quinolinate synthetase compare
Atu4099 -1.3 -6.9 hypothetical protein compare
Atu4674 -1.3 -7.6 GntR family transcriptional regulator compare
Atu2495 -1.3 -6.5 flavoprotein oxidoreductase compare
Atu0361 -1.2 -3.0 transcriptional regulator compare
Atu0770 -1.2 -5.6 cytochrome C oxidase assembly protein compare
Atu4544 -1.2 -6.5 4-hydroxybenzoate 3-monooxygenase compare
Atu2267 -1.2 -4.4 hypothetical protein compare
Atu2821 -1.2 -4.2 transcriptional regulator, GntR family compare
Atu4539 -1.2 -7.0 protocatechuate 3,4-dioxygenase alpha chain compare
Atu4545 -1.1 -6.1 AraC family transcriptional regulator conserved
Atu0101 -1.1 -5.1 cytochrome c compare
Atu0771 -1.1 -6.9 cytochrome c oxidase subunit III compare
Atu0767 -1.1 -5.6 cytochrome c oxidase subunit II compare
Atu1419 -1.1 -5.7 transcriptional regulator, GntR family compare
Atu2472 -1.1 -2.2 hypothetical protein compare
Atu2209 -1.1 -4.4 pyrroline-5-carboxylate reductase compare
Atu1327 -1.1 -2.3 NADH-ubiquinone oxidoreductase compare
Atu1904 -1.1 -4.8 transcriptional regulator compare
Atu4540 -1.1 -2.3 protocatechuate 3,4-dioxygenase subunit beta compare
Atu3115 -1.1 -5.2 TetR family transcriptional regulator compare
Atu0971 -1.0 -3.0 two component sensor kinase compare
Atu5125 -1.0 -4.7 GntR family transcriptional regulator compare
Atu0981 -1.0 -6.5 glutamate-ammonia-ligase adenylyltransferase compare
Atu1074 -1.0 -7.6 NAD/NADP dependent oxidoreductase compare
Atu4346 -1.0 -2.9 hypothetical protein compare
Atu3663 -1.0 -1.6 hypothetical protein compare
Atu4232 -1.0 -5.2 GntR family transcriptional regulator compare
Atu2795 -1.0 -5.3 cobalamin biosynthetic protein compare
Atu1163 -1.0 -2.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2532 -1.0 -3.6 transcriptional regulator, MarR family compare
Atu2193 -1.0 -1.1 hypothetical protein compare
Atu3908 -1.0 -5.9 GntR family transcriptional regulator compare
Atu2832 -0.9 -2.7 tRNA modification GTPase compare
Atu4576 -0.9 -6.3 ROK family transcriptional regulator compare
Atu0894 -0.9 -1.8 ABC transporter, membrane spanning protein compare
Atu4882 -0.9 -1.8 hypothetical protein compare
Atu0895 -0.9 -1.8 ABC transporter, substrate binding protein compare
Atu0641 -0.9 -3.4 hypothetical protein compare
Atu0346 -0.9 -2.1 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0434 -0.9 -1.6 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3763 -0.9 -1.3 hypothetical protein compare
Atu1242 -0.9 -4.9 cytochrome oxidase assembly factor compare
Atu2548 -0.9 -6.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu0331 -0.9 -1.7 sigma-54 modulation protein compare
Atu2747 -0.9 -6.1 hypothetical protein compare
Atu0852 -0.9 -3.0 transcriptional regulator, MarR family compare
Atu1810 -0.8 -1.2 hypothetical protein compare
Atu0405 -0.8 -6.8 long-chain-fatty-acid-CoA-ligase compare
Atu3290 -0.8 -4.3 phosphomethylpyrimidine kinase compare
Atu4702 -0.8 -3.8 GntR family transcriptional regulator compare
Atu1454 -0.8 -5.6 siroheme synthase compare
Atu0846 -0.8 -2.8 transcriptional regulator, MarR family compare
Atu8054 -0.8 -0.9 hypothetical protein compare
Atu0302 -0.8 -4.5 tetrapyrrole methylase family protein compare
Atu2204 -0.8 -1.9 hypothetical protein compare
Atu1542 -0.8 -3.2 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu3280 -0.8 -4.8 GntR family transcriptional regulator compare
Atu3289 -0.8 -2.4 thiamine-phosphate pyrophosphorylase compare
Atu0638 -0.8 -1.8 hypothetical protein compare
Atu1774 -0.8 -5.1 ABC transporter, substrate binding protein (peptide) compare
Atu5464 -0.8 -5.0 IclR family transcriptional regulator compare
Atu0502 -0.8 -4.2 acetyl-CoA acetyltransferase compare
Atu3732 -0.8 -4.4 hemolysin compare
Atu1457 -0.8 -2.0 hypothetical protein compare
Atu2800 -0.8 -3.3 precorrin-3B C17-methyltransferase compare
Atu1086 -0.8 -4.9 MFS permease compare
Atu3017 -0.8 -1.1 phosphoglyceromutase compare
Atu2798 -0.7 -2.6 precorrin-6y methyltransferase compare
Atu1470 -0.7 -1.0 Camphor resistance protein compare
Atu0354 -0.7 -1.8 ferric uptake regulator compare
Atu2569 -0.7 -5.4 thiamine biosynthesis protein compare
Atu3476 -0.7 -3.0 AsnC family transcriptional regulator compare
Atu5075 -0.7 -4.1 GntR family transcriptional regulator compare
Atu0300 -0.7 -3.3 methyltransferase compare
Atu3264 -0.7 -3.4 IclR family transcriptional regulator compare
Atu4068 -0.7 -1.8 sarcosine oxidase delta subunit compare
Atu2376 -0.7 -0.6 hypothetical protein compare
Atu2406 -0.7 -2.4 hypothetical protein compare
Atu2123 -0.7 -3.1 methylenetetrahydrofolate reductase compare
Atu1087 -0.7 -4.1 secretion protein compare
Atu2746 -0.7 -2.3 hypothetical protein compare
Atu4514 -0.7 -3.3 RpiR family transcriptional regulator compare
Atu3461 -0.7 -1.3 GntR family transcriptional regulator compare
Atu0401 -0.7 -3.3 fructokinase compare
Atu8115 -0.7 -3.4 Hypothetical Protein compare
Atu3226 -0.7 -3.1 GntR family transcriptional regulator compare
Atu2801 -0.7 -2.2 precorrin-2 C20 methyltransferase compare
Atu4072 -0.7 -1.2 nodulation protein N compare
Atu1748 -0.7 -4.4 NIFU-like protein compare
Atu2270 -0.7 -1.0 ATP-dependent Clp protease, proteolytic subunit compare


Specific Phenotypes

For 16 genes in this experiment

For carbon source 4-Hydroxyphenylpropionic acid in Agrobacterium fabrum C58

For carbon source 4-Hydroxyphenylpropionic acid across organisms