Experiment set11IT015 for Agrobacterium fabrum C58

Compare to:

L-(+)-Erythrulose carbon source

200 most important genes:

  gene name fitness t score description  
Atu2791 -6.7 -8.0 3-isopropylmalate dehydrogenase compare
Atu1687 -6.2 -8.3 anthranilate phosphoribosyltransferase compare
Atu0038 -6.0 -6.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2289 -6.0 -18.8 anthranilate synthase component I and II compare
Atu1688 -5.6 -6.7 indole-3-glycerol-phosphate synthase compare
Atu0017 -5.6 -3.9 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2036 -5.4 -16.4 acetolactate synthase III, large subunit compare
Atu1075 -5.4 -8.0 amidophosphoribosyltransferase compare
Atu2709 -5.4 -18.6 3-isopropylmalate dehydratase, large subunit compare
Atu1845 -5.2 -5.7 phosphoribosylformylglycinamidine synthase I compare
Atu1844 -5.2 -4.5 Phosphoribosylformylglycinamidine synthetase compare
Atu2264 -5.1 -14.8 2-isopropylmalate synthase compare
Atu1750 -5.1 -7.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu0099 -4.8 -15.5 prephenate dehydratase compare
Atu1462 -4.7 -15.6 glycine cleavage system protein P2 compare
Atu1464 -4.6 -7.2 glycine cleavage system T protein, aminomethyltransferase compare
Atu3754 -4.6 -7.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0537 -4.6 -9.2 histidinol dehydrogenase compare
Atu1140 -4.6 -4.2 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0043 -4.5 -3.1 imidazoleglycerol-phosphate dehydratase compare
Atu0039 -4.5 -3.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu1463 -4.4 -4.4 glycine cleavage system component H compare
Atu3755 -4.3 -6.2 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0678 -4.2 -7.6 histidyl-tRNA synthetase compare
Atu0647 -4.2 -9.3 phosphoribosylamine--glycine ligase compare
Atu2790 -4.1 -3.1 3-isopropylmalate dehydratase, small subunit compare
Atu1850 -4.0 -4.2 phosphoribosylformylglycinamidine synthetase II compare
Atu2650 -3.9 -11.8 glycerol-3-phosphate dehydrogenase compare
Atu1141 -3.8 -4.9 Phosphoribosylglycinamide synthetase compare
Atu0399 -3.8 -8.8 dihydroorotase compare
Atu0047 -3.5 -16.0 malate synthase G compare
Atu0679 -3.5 -6.3 ATP phosphoribosyltransferase compare
Atu0041 -3.5 -2.9 glutamine amidotransferase compare
Atu1030 -3.4 -2.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1359 -3.3 -1.8 dnaK deletion suppressor protein compare
Atu0400 -3.3 -4.7 orotate phosphoribosyltransferase compare
Atu0298 -3.2 -10.2 orotidine 5 compare
Atu3885 -3.1 -6.9 inositol monophosphatase compare
Atu2718 -3.1 -7.0 homoserine O-succinyltransferase compare
Atu0040 -3.1 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0536 -3.1 -7.6 hypothetical protein compare
Atu0030 -3.1 -2.3 phosphocarrier protein HPr compare
Atu3783 -3.0 -15.1 glutamate synthase subunit beta compare
Atu3482 -3.0 -7.6 pantoate--beta-alanine ligase compare
Atu2745 -2.9 -15.5 acetyl-coenzyme A synthetase compare
Atu0803 -2.9 -18.7 pyruvate,orthophosphate dikinase compare
Atu1308 -2.8 -8.0 aspartate carbamoyl transferase catalytic subunit compare
Atu0432 -2.8 -6.6 O-succinylhomoserine sulfhydrylase compare
Atu3486 -2.7 -2.9 DeoR family transcriptional regulator compare
Atu3731 -2.7 -7.9 5-formyltetrahydrofolate cyclo-ligase compare
Atu2155 -2.7 -14.8 methionine synthase compare
Atu0486 -2.7 -8.2 dihydroorotate dehydrogenase compare
Atu1205 -2.7 -12.3 threonine dehydratase compare
Atu2225 -2.7 -11.3 transcriptional regulator compare
Atu1307 -2.5 -7.4 dihydroorotase compare
Atu3763 -2.5 -2.1 hypothetical protein compare
Atu1446 -2.5 -3.5 two component response regulator compare
Atu3784 -2.5 -18.0 glutamate synthase large subunit compare
Atu2554 -2.5 -3.9 lysyl-tRNA synthetase compare
Atu0062 -2.4 -8.0 transcriptional regulator, ROK family compare
Atu2224 -2.3 -6.5 aldehyde dehydrogenase compare
Atu3730 -2.3 -1.7 hypothetical protein compare
Atu0876 -2.1 -3.3 superoxide dismutase compare
Atu2205 -2.0 -4.3 transcriptional regulator, MarR family compare
Atu3483 -2.0 -4.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0029 -2.0 -5.6 S-adenosylhomocysteine hydrolase compare
Atu3289 -2.0 -6.2 thiamine-phosphate pyrophosphorylase compare
Atu4685 -2.0 -8.5 LacI family transcriptional regulator compare
Atu1904 -2.0 -3.3 transcriptional regulator compare
Atu1566 -1.9 -1.7 hypothetical protein compare
Atu2015 -1.9 -9.7 aminotransferase compare
Atu0115 -1.8 -1.3 hypothetical protein compare
Atu2569 -1.8 -10.1 thiamine biosynthesis protein compare
Atu4541 -1.7 -4.8 carboxymuconolactone decarboxylase compare
Atu0723 -1.7 -2.3 FAD dependent oxidoreductase compare
Atu0434 -1.7 -2.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4743 -1.7 -8.8 LacI family transcriptional regulator compare
Atu0608 -1.7 -9.8 transcriptional regulator compare
Atu3290 -1.7 -6.8 phosphomethylpyrimidine kinase compare
Atu0035 -1.6 -7.0 phosphoenolpyruvate carboxykinase compare
Atu0205 -1.6 -8.9 methylmalonate-semialdehyde dehydrogenase compare
Atu0501 -1.6 -10.6 acyl-CoA dehydrogenase compare
Atu0607 -1.6 -10.7 isocitrate lyase compare
Atu3878 -1.6 -10.4 transcriptional regulator compare
Atu4505 -1.6 -6.8 LacI family transcriptional regulator compare
Atu2067 -1.5 -1.2 hypothetical protein compare
Atu3162 -1.5 -8.2 LacI family transcriptional regulator compare
Atu0401 -1.5 -6.4 fructokinase compare
Atu3337 -1.5 -9.2 LacI family transcriptional regulator compare
Atu0626 -1.4 -9.3 alcohol dehydrogenase compare
Atu4773 -1.4 -2.4 two component response regulator compare
Atu5451 -1.4 -1.9 hypothetical protein compare
Atu3288 -1.4 -5.8 hydroxyethylthiazole kinase compare
Atu0606 -1.4 -1.8 hypothetical protein compare
Atu0912 -1.3 -1.6 Na+/H+ antiporter compare
Atu3739 -1.3 -2.5 phosphoglycerate kinase compare
Atu2683 -1.3 -2.1 hypothetical protein compare
Atu0101 -1.3 -3.4 cytochrome c compare
Atu0503 -1.3 -8.4 enoyl-CoA hydratase compare
Atu4317 -1.2 -4.1 TetR family transcriptional regulator compare
Atu0981 -1.2 -7.5 glutamate-ammonia-ligase adenylyltransferase compare
Atu0502 -1.2 -5.2 acetyl-CoA acetyltransferase compare
Atu1748 -1.2 -6.8 NIFU-like protein compare
Atu6114 -1.2 -1.5 hypothetical protein compare
Atu1686 -1.2 -9.0 peptidyl-prolyl cis-trans isomerse D compare
Atu2125 -1.2 -2.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu3707 -1.2 -2.4 phosphoserine aminotransferase compare
Atu2237 -1.2 -4.4 cytochrome c1 compare
Atu2249 -1.1 -1.4 hypothetical protein compare
Atu1149 -1.1 -1.3 adenylate cyclase compare
Atu3461 -1.1 -2.6 GntR family transcriptional regulator compare
Atu0225 -1.1 -0.9 hypothetical protein compare
Atu2740 -1.1 -2.9 transcriptional regulator, GntR family compare
Atu8056 -1.1 -1.2 hypothetical protein compare
Atu1286 -1.1 -3.6 hypothetical protein compare
Atu2239 -1.1 -3.0 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0421 -1.1 -1.5 ABC transporter, membrane spanning protein compare
Atu0665 -1.1 -5.4 glycolate oxidase subunit compare
Atu3240 -1.1 -6.1 ROK family transcriptional regulator compare
Atu1339 -1.1 -2.8 ribonuclease E compare
Atu4882 -1.1 -2.9 hypothetical protein compare
Atu6098 -1.0 -0.9 transcriptional regulator, HTH family compare
Atu2035 -1.0 -6.1 acetolactate synthase, small subunit compare
Atu2532 -1.0 -3.0 transcriptional regulator, MarR family compare
Atu2238 -1.0 -5.6 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu4098 -1.0 -6.4 quinolinate synthetase compare
Atu3469 -1.0 -2.2 phosphoglyceromutase compare
Atu8168 -1.0 -2.5 hypothetical protein compare
Atu1454 -1.0 -5.1 siroheme synthase compare
Atu0086 -1.0 -1.1 ribosome-binding factor A compare
Atu4128 -1.0 -5.3 GMC type oxidoreductase compare
Atu4161 -1.0 -1.3 hypothetical protein compare
Atu2606 -1.0 -3.3 transcriptional regulator, GntR family compare
Atu0769 -1.0 -1.6 protoheme IX farnesyltransferase compare
Atu1445 -1.0 -2.2 two component sensor kinase compare
Atu1028 -1.0 -2.3 hypothetical protein compare
Atu2020 -1.0 -3.3 transcriptional regulator, TetR family compare
Atu0677 -1.0 -1.7 hypothetical protein compare
Atu1902 -1.0 -3.3 transketolase compare
Atu2192 -1.0 -1.3 hypothetical protein compare
Atu3732 -0.9 -5.5 hemolysin compare
Atu1417 -0.9 -4.6 enoyl-CoA hydratase compare
Atu4514 -0.9 -3.2 RpiR family transcriptional regulator compare
Atu0340 -0.9 -1.7 SAM dependent methyltransferase compare
Atu4674 -0.9 -5.8 GntR family transcriptional regulator compare
Atu3733 -0.9 -1.3 hypothetical protein compare
Atu4576 -0.9 -5.6 ROK family transcriptional regulator compare
Atu2464 -0.9 -1.9 formyltetrahydrofolate deformylase compare
Atu2726 -0.9 -7.1 pyruvate carboxylase compare
Atu0093 -0.9 -3.4 Recombination protein compare
Atu0346 -0.9 -1.8 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0641 -0.9 -2.9 hypothetical protein compare
Atu4072 -0.9 -1.1 nodulation protein N compare
Atu4096 -0.9 -3.1 nicotinate-nucleotide pyrophosphorylase compare
Atu0777 -0.9 -0.8 hypothetical protein compare
Atu3485 -0.8 -4.6 short chain dehydrogenase compare
Atu4477 -0.8 -4.6 TetR family transcriptional regulator compare
Atu4329 -0.8 -4.8 polysaccharide export protein compare
Atu1803 -0.8 -3.2 cold shock protein compare
Atu4711 -0.8 -3.3 two component sensor kinase compare
Atu2800 -0.8 -2.3 precorrin-3B C17-methyltransferase compare
Atu1469 -0.8 -1.6 hypothetical protein compare
Atu4333 -0.8 -4.5 OmpA-like porin compare
Atu8159 -0.8 -1.5 hypothetical protein compare
Atu3264 -0.8 -2.8 IclR family transcriptional regulator compare
Atu1589 -0.8 -3.8 aminotransferase, class I compare
Atu0361 -0.8 -1.7 transcriptional regulator compare
Atu2439 -0.8 -1.1 hypothetical protein compare
Atu3018 -0.8 -3.5 hypothetical protein compare
Atu4328 -0.8 -2.7 hypothetical protein compare
Atu2122 -0.8 -3.4 lytic murein transglycosylase compare
Atu8018 -0.8 -0.9 hypothetical protein compare
Atu3577 -0.8 -4.9 transcriptional regulator compare
Atu3505 -0.8 -3.8 3-hydroxyisobutyryl-CoA hydrolase compare
Atu4878 -0.8 -3.9 hypothetical protein compare
Atu2354 -0.8 -2.3 transcriptional regulator, MarR family compare
Atu0667 -0.7 -4.8 glycolate oxidase iron-sulfur subunit compare
Atu3327 -0.7 -2.9 succinoglycan exopolysaccharide synthesis protein compare
Atu4338 -0.7 -4.3 hypothetical protein compare
Atu3476 -0.7 -2.7 AsnC family transcriptional regulator compare
Atu0026 -0.7 -0.7 hypothetical protein compare
Atu2028 -0.7 -1.8 transcriptional regulator, ArsR family compare
Atu1670 -0.7 -4.7 alcohol dehydrogenase class III compare
Atu4502 -0.7 -4.0 cobalamin synthesis protein compare
Atu3280 -0.7 -4.3 GntR family transcriptional regulator compare
Atu4097 -0.7 -3.7 L-aspartate oxidase compare
Atu4077 -0.7 -4.0 glycogen branching protein compare
Atu2565 -0.7 -4.2 hypothetical protein compare
Atu1076 -0.7 -2.6 colicin V production protein compare
Atu0300 -0.7 -3.0 methyltransferase compare
Atu3608 -0.7 -3.0 hypothetical protein compare
Atu3009 -0.7 -0.6 exopolysaccharide production protein compare
Atu2555 -0.7 -2.3 L-lysine 2,3-aminomutase compare
Atu3898 -0.7 -3.8 DeoR family transcriptional regulator compare
Atu1683 -0.7 -1.8 hypothetical protein compare
Atu4232 -0.7 -2.1 GntR family transcriptional regulator compare
Atu1980 -0.7 -1.8 hypothetical protein compare
Atu1242 -0.7 -3.6 cytochrome oxidase assembly factor compare
Atu4341 -0.7 -4.0 hypothetical protein compare
Atu4873 -0.7 -2.9 TetR family transcriptional regulator compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source L-(+)-Erythrulose in Agrobacterium fabrum C58

For carbon source L-(+)-Erythrulose across organisms