Experiment set11IT009 for Agrobacterium fabrum C58

Compare to:

1,5-Pentanediol carbon source

200 most important genes:

  gene name fitness t score description  
Atu2289 -6.0 -18.6 anthranilate synthase component I and II compare
Atu0017 -5.7 -3.9 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0047 -5.6 -18.7 malate synthase G compare
Atu1850 -5.6 -5.7 phosphoribosylformylglycinamidine synthetase II compare
Atu0099 -5.5 -13.4 prephenate dehydratase compare
Atu1688 -5.5 -7.5 indole-3-glycerol-phosphate synthase compare
Atu1588 -5.5 -9.2 homoserine dehydrogenase compare
Atu0679 -5.5 -8.4 ATP phosphoribosyltransferase compare
Atu3885 -5.2 -8.8 inositol monophosphatase compare
Atu2264 -5.1 -16.4 2-isopropylmalate synthase compare
Atu0803 -5.1 -23.4 pyruvate,orthophosphate dikinase compare
Atu0537 -5.0 -7.6 histidinol dehydrogenase compare
Atu1030 -5.0 -3.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1687 -4.9 -11.4 anthranilate phosphoribosyltransferase compare
Atu2791 -4.9 -9.8 3-isopropylmalate dehydrogenase compare
Atu3706 -4.9 -10.4 D-3-phosphoglycerate dehydrogenase compare
Atu1750 -4.8 -5.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu0608 -4.8 -16.0 transcriptional regulator compare
Atu1844 -4.8 -5.5 Phosphoribosylformylglycinamidine synthetase compare
Atu0038 -4.7 -5.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0035 -4.7 -12.6 phosphoenolpyruvate carboxykinase compare
Atu1075 -4.7 -10.0 amidophosphoribosyltransferase compare
Atu2709 -4.7 -21.5 3-isopropylmalate dehydratase, large subunit compare
Atu0043 -4.7 -3.2 imidazoleglycerol-phosphate dehydratase compare
Atu1205 -4.6 -16.0 threonine dehydratase compare
Atu0399 -4.5 -9.1 dihydroorotase compare
Atu0607 -4.5 -21.4 isocitrate lyase compare
Atu3754 -4.5 -8.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2745 -4.5 -20.2 acetyl-coenzyme A synthetase compare
Atu0432 -4.4 -10.5 O-succinylhomoserine sulfhydrylase compare
Atu2718 -4.4 -11.0 homoserine O-succinyltransferase compare
Atu0647 -4.4 -8.9 phosphoribosylamine--glycine ligase compare
Atu0298 -4.4 -10.5 orotidine 5 compare
Atu3740 -4.4 -12.2 fructose bisphosphate aldolase compare
Atu3707 -4.3 -5.1 phosphoserine aminotransferase compare
Atu2040 -4.3 -6.6 phosphoserine phosphatase compare
Atu0030 -4.3 -2.9 phosphocarrier protein HPr compare
Atu4505 -4.3 -11.0 LacI family transcriptional regulator compare
Atu2036 -4.3 -16.7 acetolactate synthase III, large subunit compare
Atu1307 -4.3 -10.0 dihydroorotase compare
Atu1308 -4.3 -9.9 aspartate carbamoyl transferase catalytic subunit compare
Atu4773 -4.2 -2.5 two component response regulator compare
Atu0486 -4.2 -8.4 dihydroorotate dehydrogenase compare
Atu3755 -4.2 -6.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2790 -4.1 -3.8 3-isopropylmalate dehydratase, small subunit compare
Atu1141 -4.1 -9.3 Phosphoribosylglycinamide synthetase compare
Atu1845 -4.1 -5.1 phosphoribosylformylglycinamidine synthase I compare
Atu0536 -4.1 -6.9 hypothetical protein compare
Atu0678 -4.0 -7.6 histidyl-tRNA synthetase compare
Atu2225 -4.0 -13.7 transcriptional regulator compare
Atu0039 -4.0 -3.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu3739 -3.9 -4.3 phosphoglycerate kinase compare
Atu2650 -3.9 -15.8 glycerol-3-phosphate dehydrogenase compare
Atu2224 -3.8 -12.7 aldehyde dehydrogenase compare
Atu1140 -3.7 -4.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3469 -3.7 -3.5 phosphoglyceromutase compare
Atu0041 -3.5 -3.4 glutamine amidotransferase compare
Atu0400 -3.5 -7.1 orotate phosphoribosyltransferase compare
Atu1620 -3.5 -13.1 triosephosphate isomerase compare
Atu2747 -3.3 -12.5 hypothetical protein compare
Atu0663 -3.3 -17.1 hypothetical protein compare
Atu3763 -3.3 -2.2 hypothetical protein compare
Atu0031 -3.0 -2.4 PTS system, IIA component compare
Atu3482 -3.0 -10.6 pantoate--beta-alanine ligase compare
Atu3783 -3.0 -17.4 glutamate synthase subunit beta compare
Atu0723 -2.9 -2.7 FAD dependent oxidoreductase compare
Atu0606 -2.7 -3.4 hypothetical protein compare
Atu3731 -2.6 -9.7 5-formyltetrahydrofolate cyclo-ligase compare
Atu1359 -2.6 -2.1 dnaK deletion suppressor protein compare
Atu6098 -2.4 -2.0 transcriptional regulator, HTH family compare
Atu3784 -2.4 -19.5 glutamate synthase large subunit compare
Atu2684 -2.4 -3.7 hypothetical protein compare
Atu0040 -2.4 -2.2 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1589 -2.4 -8.6 aminotransferase, class I compare
Atu3730 -2.3 -2.0 hypothetical protein compare
Atu2115 -2.2 -9.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2015 -2.2 -11.7 aminotransferase compare
Atu1464 -2.1 -8.5 glycine cleavage system T protein, aminomethyltransferase compare
Atu3483 -2.0 -6.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1462 -2.0 -13.0 glycine cleavage system protein P2 compare
Atu0188 -2.0 -2.8 ABC transporter, membrane spanning protein (peptide) compare
Atu1686 -1.9 -10.5 peptidyl-prolyl cis-trans isomerse D compare
Atu0346 -1.8 -2.8 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1028 -1.8 -4.6 hypothetical protein compare
Atu2155 -1.7 -13.7 methionine synthase compare
Atu4096 -1.7 -7.0 nicotinate-nucleotide pyrophosphorylase compare
Atu0664 -1.6 -10.3 transcriptional regulator, LysR family compare
Atu1463 -1.6 -6.8 glycine cleavage system component H compare
Atu0062 -1.6 -7.7 transcriptional regulator, ROK family compare
Atu0029 -1.5 -6.0 S-adenosylhomocysteine hydrolase compare
Atu4098 -1.5 -8.2 quinolinate synthetase compare
Atu2207 -1.5 -2.3 two component sensor kinase compare
Atu1748 -1.5 -7.3 NIFU-like protein compare
Atu1446 -1.5 -3.5 two component response regulator compare
Atu1904 -1.5 -3.5 transcriptional regulator compare
Atu4711 -1.4 -7.5 two component sensor kinase compare
Atu5430 -1.4 -1.9 hypothetical protein compare
Atu2209 -1.4 -4.4 pyrroline-5-carboxylate reductase compare
Atu0641 -1.4 -4.7 hypothetical protein compare
Atu6138 -1.3 -7.3 Repressor of the acc and arc operons compare
Atu2205 -1.3 -3.4 transcriptional regulator, MarR family compare
Atu0331 -1.3 -3.0 sigma-54 modulation protein compare
Atu0434 -1.3 -2.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4541 -1.3 -5.3 carboxymuconolactone decarboxylase compare
Atu4317 -1.3 -3.7 TetR family transcriptional regulator compare
Atu2633 -1.3 -3.2 RhtB family transporter compare
Atu1457 -1.3 -3.4 hypothetical protein compare
Atu0501 -1.2 -8.9 acyl-CoA dehydrogenase compare
Atu0626 -1.2 -7.5 alcohol dehydrogenase compare
Atu2548 -1.2 -8.5 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3162 -1.2 -5.0 LacI family transcriptional regulator compare
Atu4685 -1.2 -6.7 LacI family transcriptional regulator compare
Atu1570 -1.1 -1.2 hypothetical protein compare
Atu4346 -1.1 -5.9 hypothetical protein compare
Atu6114 -1.1 -1.7 hypothetical protein compare
Atu1454 -1.1 -6.2 siroheme synthase compare
Atu4097 -1.1 -5.4 L-aspartate oxidase compare
Atu2239 -1.1 -3.8 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu8115 -1.1 -4.9 Hypothetical Protein compare
Atu1456 -1.1 -7.3 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1714 -1.1 -1.9 exonuclease III compare
Atu4514 -1.0 -4.4 RpiR family transcriptional regulator compare
Atu4615 -1.0 -6.6 glucose-1-phosphate thymidylyltransferase compare
Atu3505 -1.0 -6.1 3-hydroxyisobutyryl-CoA hydrolase compare
Atu0502 -1.0 -5.0 acetyl-CoA acetyltransferase compare
Atu4502 -1.0 -5.5 cobalamin synthesis protein compare
Atu0503 -1.0 -7.7 enoyl-CoA hydratase compare
Atu4614 -1.0 -4.7 glycosyltransferase compare
Atu0401 -0.9 -5.1 fructokinase compare
Atu4217 -0.9 -1.4 TetR family transcriptional regulator compare
Atu2726 -0.9 -7.9 pyruvate carboxylase compare
Atu4418 -0.9 -3.9 glutaryl-CoA dehydrogenase compare
Atu4674 -0.9 -6.4 GntR family transcriptional regulator compare
Atu3963 -0.9 -5.5 GntR family transcriptional regulator compare
Atu2439 -0.9 -1.3 hypothetical protein compare
Atu2554 -0.9 -2.0 lysyl-tRNA synthetase compare
Atu3486 -0.9 -1.9 DeoR family transcriptional regulator compare
Atu4148 -0.8 -3.6 UDP-glucuronic acid epimerase compare
Atu1232 -0.8 -1.9 hypothetical protein compare
Atu5125 -0.8 -3.8 GntR family transcriptional regulator compare
Atu3337 -0.8 -5.3 LacI family transcriptional regulator compare
Atu1163 -0.8 -1.2 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4364 -0.8 -3.9 LacI family transcriptional regulator compare
Atu4232 -0.8 -4.1 GntR family transcriptional regulator compare
Atu4613 -0.8 -6.1 glycosyltransferase compare
Atu2267 -0.8 -4.6 hypothetical protein compare
Atu4446 -0.8 -4.9 hypothetical protein compare
Atu2640 -0.8 -2.5 hypothetical protein compare
Atu0538 -0.8 -2.3 hypothetical protein compare
Atu4618 -0.8 -5.3 dTDP-rhamnose-3,5-epimerase compare
Atu0923 -0.7 -4.4 hypothetical protein compare
Atu0189 -0.7 -1.3 ABC transporter, membrane spanning protein (peptide) compare
Atu4161 -0.7 -2.0 hypothetical protein compare
Atu3353 -0.7 -5.6 mannose-1-phosphate guanylyltransferase compare
Atu3732 -0.7 -4.6 hemolysin compare
Atu2798 -0.7 -2.4 precorrin-6y methyltransferase compare
Atu1445 -0.7 -3.2 two component sensor kinase compare
Atu3183 -0.7 -0.8 hypothetical protein compare
Atu0977 -0.7 -2.7 serine protease DO-like protease compare
Atu2183 -0.7 -4.5 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu8012 -0.7 -1.3 hypothetical protein compare
Atu1286 -0.7 -3.3 hypothetical protein compare
Atu0703 -0.7 -2.0 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0101 -0.7 -1.9 cytochrome c compare
Atu2067 -0.7 -0.8 hypothetical protein compare
Atu3663 -0.7 -1.3 hypothetical protein compare
Atu4191 -0.7 -3.8 GntR family transcriptional regulator compare
Atu5075 -0.7 -3.4 GntR family transcriptional regulator compare
Atu3910 -0.7 -3.5 LamB/YcsF family protein compare
Atu0086 -0.7 -0.9 ribosome-binding factor A compare
Atu2683 -0.7 -1.5 hypothetical protein compare
Atu4576 -0.7 -3.9 ROK family transcriptional regulator compare
Atu1455 -0.7 -1.9 hypothetical protein compare
Atu2502 -0.7 -3.2 heme oxygenase compare
Atu0300 -0.7 -3.3 methyltransferase compare
Atu3115 -0.6 -2.6 TetR family transcriptional regulator compare
Atu8056 -0.6 -0.9 hypothetical protein compare
Atu1495 -0.6 -2.1 hypothetical protein compare
Atu3698 -0.6 -2.5 thioredoxin compare
Atu1810 -0.6 -0.6 hypothetical protein compare
Atu1774 -0.6 -4.0 ABC transporter, substrate binding protein (peptide) compare
Atu2728 -0.6 -2.5 beta (1-->2) glucan export ATP-binding protein compare
Atu4128 -0.6 -4.9 GMC type oxidoreductase compare
Atu4702 -0.6 -3.9 GntR family transcriptional regulator compare
Atu8034 -0.6 -2.6 hypothetical protein compare
Atu4743 -0.6 -3.1 LacI family transcriptional regulator compare
Atu2125 -0.6 -1.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu0895 -0.6 -1.4 ABC transporter, substrate binding protein compare
Atu4617 -0.6 -4.6 dTDP-D-glucose-4,6-dehydratase compare
Atu2799 -0.6 -2.0 precorrin-6x reductase compare
Atu4200 -0.6 -1.8 hypothetical protein compare
Atu5088 -0.6 -2.2 hypothetical protein compare
Atu0026 -0.6 -0.8 hypothetical protein compare
Atu1419 -0.6 -3.4 transcriptional regulator, GntR family compare
Atu1685 -0.6 -0.8 hypothetical protein compare
Atu1327 -0.6 -2.2 NADH-ubiquinone oxidoreductase compare
Atu3597 -0.6 -3.7 3-hydroxybutyryl-CoA dehydrogenase compare
Atu1760 -0.6 -0.9 hypothetical protein compare
Atu0852 -0.6 -2.8 transcriptional regulator, MarR family compare
Atu0893 -0.6 -2.0 ABC transporter, nucleotide binding/ATPase protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source 1,5-Pentanediol in Agrobacterium fabrum C58

For carbon source 1,5-Pentanediol across organisms