Experiment set11IT008 for Agrobacterium fabrum C58

Compare to:

1,5-Pentanediol carbon source

200 most important genes:

  gene name fitness t score description  
Atu1844 -6.6 -4.6 Phosphoribosylformylglycinamidine synthetase compare
Atu0536 -6.1 -8.3 hypothetical protein compare
Atu0017 -5.8 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1687 -5.7 -11.7 anthranilate phosphoribosyltransferase compare
Atu0035 -5.5 -11.5 phosphoenolpyruvate carboxykinase compare
Atu1588 -5.3 -10.2 homoserine dehydrogenase compare
Atu2289 -5.3 -20.3 anthranilate synthase component I and II compare
Atu1688 -5.2 -8.7 indole-3-glycerol-phosphate synthase compare
Atu3706 -5.2 -10.5 D-3-phosphoglycerate dehydrogenase compare
Atu1075 -5.0 -10.1 amidophosphoribosyltransferase compare
Atu1030 -5.0 -3.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2791 -5.0 -9.1 3-isopropylmalate dehydrogenase compare
Atu0608 -4.9 -16.9 transcriptional regulator compare
Atu0047 -4.9 -15.5 malate synthase G compare
Atu3740 -4.8 -11.1 fructose bisphosphate aldolase compare
Atu3707 -4.8 -4.7 phosphoserine aminotransferase compare
Atu2709 -4.8 -21.6 3-isopropylmalate dehydratase, large subunit compare
Atu0803 -4.8 -22.4 pyruvate,orthophosphate dikinase compare
Atu0099 -4.8 -12.9 prephenate dehydratase compare
Atu0039 -4.7 -3.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu0607 -4.7 -19.2 isocitrate lyase compare
Atu0399 -4.7 -9.5 dihydroorotase compare
Atu0537 -4.7 -8.9 histidinol dehydrogenase compare
Atu0038 -4.6 -5.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3469 -4.6 -3.2 phosphoglyceromutase compare
Atu0678 -4.6 -8.2 histidyl-tRNA synthetase compare
Atu1750 -4.6 -4.3 phosphoribosyl c-AMP cyclohydrolase compare
Atu4505 -4.6 -12.4 LacI family transcriptional regulator compare
Atu1850 -4.5 -4.2 phosphoribosylformylglycinamidine synthetase II compare
Atu3739 -4.5 -3.9 phosphoglycerate kinase compare
Atu0679 -4.5 -8.6 ATP phosphoribosyltransferase compare
Atu2745 -4.5 -17.7 acetyl-coenzyme A synthetase compare
Atu2036 -4.4 -17.7 acetolactate synthase III, large subunit compare
Atu1205 -4.4 -17.6 threonine dehydratase compare
Atu2264 -4.4 -16.4 2-isopropylmalate synthase compare
Atu1307 -4.4 -8.4 dihydroorotase compare
Atu2040 -4.3 -6.6 phosphoserine phosphatase compare
Atu0400 -4.2 -7.0 orotate phosphoribosyltransferase compare
Atu3754 -4.2 -9.1 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1308 -4.2 -9.4 aspartate carbamoyl transferase catalytic subunit compare
Atu0432 -4.2 -12.7 O-succinylhomoserine sulfhydrylase compare
Atu2718 -4.1 -10.0 homoserine O-succinyltransferase compare
Atu3885 -4.1 -11.6 inositol monophosphatase compare
Atu0298 -4.1 -9.2 orotidine 5 compare
Atu0043 -4.1 -4.0 imidazoleglycerol-phosphate dehydratase compare
Atu1141 -4.1 -10.8 Phosphoribosylglycinamide synthetase compare
Atu0647 -4.1 -8.8 phosphoribosylamine--glycine ligase compare
Atu0486 -3.9 -6.2 dihydroorotate dehydrogenase compare
Atu2790 -3.7 -3.9 3-isopropylmalate dehydratase, small subunit compare
Atu2650 -3.6 -11.1 glycerol-3-phosphate dehydrogenase compare
Atu4773 -3.6 -3.1 two component response regulator compare
Atu0041 -3.6 -3.3 glutamine amidotransferase compare
Atu3755 -3.6 -6.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2225 -3.6 -15.7 transcriptional regulator compare
Atu3763 -3.3 -2.2 hypothetical protein compare
Atu1140 -3.3 -6.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0723 -3.3 -3.1 FAD dependent oxidoreductase compare
Atu2747 -3.2 -13.9 hypothetical protein compare
Atu1620 -3.2 -13.1 triosephosphate isomerase compare
Atu2224 -3.2 -12.5 aldehyde dehydrogenase compare
Atu0030 -3.2 -2.7 phosphocarrier protein HPr compare
Atu1845 -2.9 -6.0 phosphoribosylformylglycinamidine synthase I compare
Atu3482 -2.9 -7.9 pantoate--beta-alanine ligase compare
Atu0663 -2.9 -13.2 hypothetical protein compare
Atu3783 -2.7 -15.7 glutamate synthase subunit beta compare
Atu2115 -2.5 -11.9 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu3483 -2.5 -7.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu3731 -2.4 -7.7 5-formyltetrahydrofolate cyclo-ligase compare
Atu3784 -2.3 -18.9 glutamate synthase large subunit compare
Atu0029 -2.3 -8.4 S-adenosylhomocysteine hydrolase compare
Atu0606 -2.3 -3.8 hypothetical protein compare
Atu2015 -2.2 -13.5 aminotransferase compare
Atu1589 -2.2 -9.3 aminotransferase, class I compare
Atu0040 -2.2 -1.4 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1359 -2.1 -1.8 dnaK deletion suppressor protein compare
Atu2125 -2.1 -1.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu1446 -2.0 -4.3 two component response regulator compare
Atu1464 -2.0 -7.7 glycine cleavage system T protein, aminomethyltransferase compare
Atu1463 -2.0 -6.8 glycine cleavage system component H compare
Atu1462 -1.9 -13.0 glycine cleavage system protein P2 compare
Atu1686 -1.9 -13.2 peptidyl-prolyl cis-trans isomerse D compare
Atu3486 -1.9 -3.1 DeoR family transcriptional regulator compare
Atu4711 -1.7 -8.4 two component sensor kinase compare
Atu4096 -1.6 -6.8 nicotinate-nucleotide pyrophosphorylase compare
Atu4098 -1.6 -10.3 quinolinate synthetase compare
Atu0664 -1.6 -8.1 transcriptional regulator, LysR family compare
Atu2684 -1.6 -3.3 hypothetical protein compare
Atu0434 -1.5 -3.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2155 -1.5 -12.2 methionine synthase compare
Atu2207 -1.5 -3.1 two component sensor kinase compare
Atu4346 -1.5 -4.9 hypothetical protein compare
Atu2067 -1.5 -1.4 hypothetical protein compare
Atu6114 -1.4 -2.0 hypothetical protein compare
Atu1810 -1.4 -1.6 hypothetical protein compare
Atu0876 -1.4 -2.1 superoxide dismutase compare
Atu4072 -1.3 -2.0 nodulation protein N compare
Atu0062 -1.3 -7.0 transcriptional regulator, ROK family compare
Atu6138 -1.3 -7.2 Repressor of the acc and arc operons compare
Atu4317 -1.3 -4.6 TetR family transcriptional regulator compare
Atu0769 -1.3 -2.0 protoheme IX farnesyltransferase compare
Atu0188 -1.3 -2.5 ABC transporter, membrane spanning protein (peptide) compare
Atu2209 -1.3 -4.7 pyrroline-5-carboxylate reductase compare
Atu2832 -1.3 -4.2 tRNA modification GTPase compare
Atu4541 -1.2 -3.7 carboxymuconolactone decarboxylase compare
Atu3162 -1.2 -7.6 LacI family transcriptional regulator compare
Atu1456 -1.2 -8.3 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0189 -1.2 -2.3 ABC transporter, membrane spanning protein (peptide) compare
Atu0795 -1.2 -2.7 hypothetical protein compare
Atu4514 -1.2 -3.1 RpiR family transcriptional regulator compare
Atu1748 -1.2 -6.7 NIFU-like protein compare
Atu4418 -1.2 -3.9 glutaryl-CoA dehydrogenase compare
Atu1904 -1.1 -5.7 transcriptional regulator compare
Atu4166 -1.1 -2.2 UDP-glucose 4-epimerase compare
Atu0626 -1.1 -6.9 alcohol dehydrogenase compare
Atu2548 -1.1 -7.6 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1454 -1.1 -5.7 siroheme synthase compare
Atu2205 -1.1 -5.0 transcriptional regulator, MarR family compare
Atu1028 -1.1 -2.4 hypothetical protein compare
Atu4097 -1.1 -7.0 L-aspartate oxidase compare
Atu0894 -1.1 -2.1 ABC transporter, membrane spanning protein compare
Atu3505 -1.1 -4.8 3-hydroxyisobutyryl-CoA hydrolase compare
Atu4685 -1.1 -5.8 LacI family transcriptional regulator compare
Atu0322 -1.1 -5.0 enoyl CoA hydratase compare
Atu8115 -1.1 -4.5 Hypothetical Protein compare
Atu1439 -1.1 -2.1 hypothetical protein compare
Atu0346 -1.1 -3.8 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3337 -1.0 -6.2 LacI family transcriptional regulator compare
Atu0641 -1.0 -3.7 hypothetical protein compare
Atu0503 -1.0 -7.7 enoyl-CoA hydratase compare
Atu1445 -1.0 -3.6 two component sensor kinase compare
Atu3963 -1.0 -6.5 GntR family transcriptional regulator compare
Atu0501 -1.0 -7.6 acyl-CoA dehydrogenase compare
Atu3466 -1.0 -2.8 ArsR family transcriptional regulator compare
Atu4502 -0.9 -5.0 cobalamin synthesis protein compare
Atu0422 -0.9 -2.0 ABC transporter, membrane spanning protein compare
Atu2267 -0.9 -4.1 hypothetical protein compare
Atu2824 -0.9 -2.9 hypothetical protein compare
Atu4364 -0.9 -5.4 LacI family transcriptional regulator compare
Atu2746 -0.9 -2.0 hypothetical protein compare
Atu4161 -0.9 -2.1 hypothetical protein compare
Atu2406 -0.9 -2.3 hypothetical protein compare
Atu2726 -0.9 -7.0 pyruvate carboxylase compare
Atu1163 -0.8 -2.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4618 -0.8 -5.8 dTDP-rhamnose-3,5-epimerase compare
Atu0300 -0.8 -3.4 methyltransferase compare
Atu1344 -0.8 -1.9 hypothetical protein compare
Atu4615 -0.8 -5.6 glucose-1-phosphate thymidylyltransferase compare
Atu4613 -0.8 -6.6 glycosyltransferase compare
Atu5430 -0.8 -1.5 hypothetical protein compare
Atu1774 -0.8 -4.7 ABC transporter, substrate binding protein (peptide) compare
Atu0339 -0.8 -2.1 hypothetical protein compare
Atu0971 -0.8 -2.6 two component sensor kinase compare
Atu4617 -0.8 -5.8 dTDP-D-glucose-4,6-dehydratase compare
Atu2183 -0.8 -5.0 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0190 -0.8 -4.1 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2798 -0.8 -3.5 precorrin-6y methyltransferase compare
Atu0031 -0.8 -1.2 PTS system, IIA component compare
Atu2249 -0.8 -1.2 hypothetical protein compare
Atu4792 -0.8 -2.1 hypothetical protein compare
Atu1685 -0.8 -1.0 hypothetical protein compare
Atu2123 -0.8 -3.8 methylenetetrahydrofolate reductase compare
Atu2554 -0.8 -1.2 lysyl-tRNA synthetase compare
Atu3183 -0.8 -0.8 hypothetical protein compare
Atu4501 -0.8 -4.2 hypothetical protein compare
Atu0660 -0.8 -4.2 hydrolase compare
Atu0101 -0.7 -3.0 cytochrome c compare
Atu4614 -0.7 -4.1 glycosyltransferase compare
Atu2795 -0.7 -4.7 cobalamin biosynthetic protein compare
Atu8025 -0.7 -1.2 hypothetical protein compare
Atu4232 -0.7 -3.8 GntR family transcriptional regulator compare
Atu0331 -0.7 -1.5 sigma-54 modulation protein compare
Atu0784 -0.7 -1.8 hypothetical protein compare
Atu4576 -0.7 -4.4 ROK family transcriptional regulator compare
Atu0502 -0.7 -3.6 acetyl-CoA acetyltransferase compare
Atu3619 -0.7 -1.9 hypothetical protein compare
Atu3083 -0.7 -2.3 hypothetical protein compare
Atu4079 -0.7 -1.9 hypothetical protein compare
Atu0538 -0.7 -2.0 hypothetical protein compare
Atu3353 -0.7 -4.8 mannose-1-phosphate guanylyltransferase compare
Atu4743 -0.7 -3.3 LacI family transcriptional regulator compare
Atu0354 -0.7 -1.7 ferric uptake regulator compare
Atu8034 -0.7 -1.9 hypothetical protein compare
Atu3311 -0.7 -5.0 phosphomannose isomerase compare
Atu2238 -0.7 -4.1 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu4674 -0.7 -4.6 GntR family transcriptional regulator compare
Atu5125 -0.7 -2.9 GntR family transcriptional regulator compare
Atu0272 -0.6 -2.5 transcriptional regulator, MarR family compare
Atu2439 -0.6 -1.0 hypothetical protein compare
Atu2821 -0.6 -3.4 transcriptional regulator, GntR family compare
Atu1364 -0.6 -2.7 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2768 -0.6 -2.6 hypothetical protein compare
Atu0977 -0.6 -2.2 serine protease DO-like protease compare
Atu2376 -0.6 -0.6 hypothetical protein compare
Atu3485 -0.6 -3.7 short chain dehydrogenase compare
Atu1127 -0.6 -1.6 molybdopterin converting factor small subunit compare
Atu1455 -0.6 -2.8 hypothetical protein compare
Atu5075 -0.6 -3.9 GntR family transcriptional regulator compare
Atu4702 -0.6 -2.1 GntR family transcriptional regulator compare
Atu2801 -0.6 -2.7 precorrin-2 C20 methyltransferase compare
Atu2740 -0.6 -3.1 transcriptional regulator, GntR family compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source 1,5-Pentanediol in Agrobacterium fabrum C58

For carbon source 1,5-Pentanediol across organisms