Experiment set11IT005 for Agrobacterium fabrum C58

Compare to:

Sodium cholate hydrate carbon source

200 most important genes:

  gene name fitness t score description  
Atu0030 -5.8 -2.6 phosphocarrier protein HPr compare
Atu0017 -5.8 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu4613 -5.7 -19.8 glycosyltransferase compare
Atu1688 -5.4 -9.0 indole-3-glycerol-phosphate synthase compare
Atu4616 -5.3 -3.6 dTDP-4-dehydrorhamnose reductase compare
Atu0606 -5.2 -5.1 hypothetical protein compare
Atu4614 -5.2 -10.0 glycosyltransferase compare
Atu2289 -5.2 -21.5 anthranilate synthase component I and II compare
Atu3707 -5.1 -4.9 phosphoserine aminotransferase compare
Atu4618 -5.0 -16.1 dTDP-rhamnose-3,5-epimerase compare
Atu3706 -5.0 -10.6 D-3-phosphoglycerate dehydrogenase compare
Atu3353 -4.9 -16.2 mannose-1-phosphate guanylyltransferase compare
Atu0536 -4.9 -10.4 hypothetical protein compare
Atu0035 -4.9 -13.0 phosphoenolpyruvate carboxykinase compare
Atu2183 -4.8 -14.2 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4615 -4.8 -14.6 glucose-1-phosphate thymidylyltransferase compare
Atu2040 -4.8 -7.3 phosphoserine phosphatase compare
Atu0537 -4.8 -9.7 histidinol dehydrogenase compare
Atu0043 -4.8 -3.3 imidazoleglycerol-phosphate dehydratase compare
Atu0099 -4.7 -13.5 prephenate dehydratase compare
Atu0803 -4.7 -23.3 pyruvate,orthophosphate dikinase compare
Atu1687 -4.7 -13.7 anthranilate phosphoribosyltransferase compare
Atu0047 -4.6 -20.2 malate synthase G compare
Atu0607 -4.6 -21.0 isocitrate lyase compare
Atu0608 -4.6 -17.2 transcriptional regulator compare
Atu3740 -4.6 -12.1 fructose bisphosphate aldolase compare
Atu1850 -4.6 -4.8 phosphoribosylformylglycinamidine synthetase II compare
Atu1588 -4.5 -11.9 homoserine dehydrogenase compare
Atu4166 -4.5 -4.0 UDP-glucose 4-epimerase compare
Atu4617 -4.5 -12.5 dTDP-D-glucose-4,6-dehydratase compare
Atu2791 -4.4 -8.5 3-isopropylmalate dehydrogenase compare
Atu1205 -4.4 -17.9 threonine dehydratase compare
Atu2745 -4.4 -19.9 acetyl-coenzyme A synthetase compare
Atu2718 -4.3 -10.8 homoserine O-succinyltransferase compare
Atu2709 -4.3 -20.5 3-isopropylmalate dehydratase, large subunit compare
Atu0432 -4.3 -12.4 O-succinylhomoserine sulfhydrylase compare
Atu1075 -4.3 -7.7 amidophosphoribosyltransferase compare
Atu3311 -4.2 -18.6 phosphomannose isomerase compare
Atu1307 -4.2 -9.0 dihydroorotase compare
Atu1308 -4.2 -10.1 aspartate carbamoyl transferase catalytic subunit compare
Atu2264 -4.1 -16.7 2-isopropylmalate synthase compare
Atu1845 -4.1 -6.9 phosphoribosylformylglycinamidine synthase I compare
Atu3469 -4.1 -3.9 phosphoglyceromutase compare
Atu2036 -4.1 -18.6 acetolactate synthase III, large subunit compare
Atu4505 -4.1 -11.9 LacI family transcriptional regulator compare
Atu0038 -4.0 -7.2 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3885 -4.0 -11.9 inositol monophosphatase compare
Atu0678 -4.0 -6.3 histidyl-tRNA synthetase compare
Atu1140 -4.0 -4.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1620 -3.9 -15.4 triosephosphate isomerase compare
Atu1750 -3.9 -7.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu3754 -3.9 -8.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0400 -3.8 -6.9 orotate phosphoribosyltransferase compare
Atu0486 -3.8 -6.6 dihydroorotate dehydrogenase compare
Atu1141 -3.8 -10.0 Phosphoribosylglycinamide synthetase compare
Atu0399 -3.7 -7.9 dihydroorotase compare
Atu4610 -3.7 -15.2 sugar nucleotide epimerase/dehydratase compare
Atu0041 -3.7 -3.3 glutamine amidotransferase compare
Atu0679 -3.6 -8.1 ATP phosphoribosyltransferase compare
Atu4608 -3.6 -17.3 hypothetical protein compare
Atu0039 -3.6 -4.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu0298 -3.6 -8.8 orotidine 5 compare
Atu1844 -3.6 -4.4 Phosphoribosylformylglycinamidine synthetase compare
Atu2650 -3.5 -16.1 glycerol-3-phosphate dehydrogenase compare
Atu4609 -3.5 -17.0 glycosyltransferase compare
Atu0647 -3.5 -8.3 phosphoribosylamine--glycine ligase compare
Atu2225 -3.4 -13.3 transcriptional regulator compare
Atu0040 -3.2 -2.0 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4773 -3.2 -3.5 two component response regulator compare
Atu3755 -2.8 -6.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2790 -2.8 -3.9 3-isopropylmalate dehydratase, small subunit compare
Atu2747 -2.8 -15.2 hypothetical protein compare
Atu3482 -2.8 -9.8 pantoate--beta-alanine ligase compare
Atu3739 -2.7 -4.4 phosphoglycerate kinase compare
Atu2115 -2.6 -13.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2224 -2.6 -11.2 aldehyde dehydrogenase compare
Atu2379 -2.5 -12.7 phosphomannomutase compare
Atu0723 -2.5 -2.9 FAD dependent oxidoreductase compare
Atu0031 -2.3 -2.3 PTS system, IIA component compare
Atu3763 -2.3 -2.2 hypothetical protein compare
Atu1359 -2.3 -2.0 dnaK deletion suppressor protein compare
Atu2684 -2.3 -4.2 hypothetical protein compare
Atu2554 -2.2 -3.9 lysyl-tRNA synthetase compare
Atu1686 -2.2 -13.5 peptidyl-prolyl cis-trans isomerse D compare
Atu1030 -2.2 -2.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3783 -2.1 -13.7 glutamate synthase subunit beta compare
Atu2015 -1.9 -12.8 aminotransferase compare
Atu3731 -1.8 -10.2 5-formyltetrahydrofolate cyclo-ligase compare
Atu3784 -1.8 -15.4 glutamate synthase large subunit compare
Atu6098 -1.8 -1.7 transcriptional regulator, HTH family compare
Atu0663 -1.8 -11.6 hypothetical protein compare
Atu0664 -1.7 -8.7 transcriptional regulator, LysR family compare
Atu1589 -1.7 -7.3 aminotransferase, class I compare
Atu2155 -1.6 -12.2 methionine synthase compare
Atu6114 -1.5 -1.7 hypothetical protein compare
Atu0626 -1.5 -9.4 alcohol dehydrogenase compare
Atu0062 -1.5 -7.4 transcriptional regulator, ROK family compare
Atu1446 -1.5 -2.1 two component response regulator compare
Atu0876 -1.4 -2.3 superoxide dismutase compare
Atu0086 -1.4 -1.7 ribosome-binding factor A compare
Atu0434 -1.4 -1.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3486 -1.4 -3.3 DeoR family transcriptional regulator compare
Atu1028 -1.4 -3.8 hypothetical protein compare
Atu0188 -1.3 -1.7 ABC transporter, membrane spanning protein (peptide) compare
Atu4096 -1.2 -6.5 nicotinate-nucleotide pyrophosphorylase compare
Atu3483 -1.2 -5.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu4098 -1.2 -8.3 quinolinate synthetase compare
Atu0769 -1.2 -1.8 protoheme IX farnesyltransferase compare
Atu4502 -1.2 -5.5 cobalamin synthesis protein compare
Atu0501 -1.2 -8.4 acyl-CoA dehydrogenase compare
Atu1456 -1.2 -8.1 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2207 -1.2 -2.4 two component sensor kinase compare
Atu0502 -1.2 -6.0 acetyl-CoA acetyltransferase compare
Atu4161 -1.1 -2.3 hypothetical protein compare
Atu4711 -1.1 -5.1 two component sensor kinase compare
Atu4541 -1.1 -4.0 carboxymuconolactone decarboxylase compare
Atu2640 -1.1 -3.9 hypothetical protein compare
Atu0354 -1.1 -2.5 ferric uptake regulator compare
Atu0029 -1.1 -5.6 S-adenosylhomocysteine hydrolase compare
Atu4514 -1.1 -4.6 RpiR family transcriptional regulator compare
Atu0503 -1.1 -8.5 enoyl-CoA hydratase compare
Atu0346 -1.1 -3.0 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4685 -1.1 -5.9 LacI family transcriptional regulator compare
Atu6138 -1.0 -5.7 Repressor of the acc and arc operons compare
Atu1454 -1.0 -5.4 siroheme synthase compare
Atu5125 -1.0 -4.5 GntR family transcriptional regulator compare
Atu0641 -1.0 -3.8 hypothetical protein compare
Atu4346 -1.0 -3.3 hypothetical protein compare
Atu2239 -1.0 -2.4 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1445 -0.9 -5.1 two component sensor kinase compare
Atu1163 -0.9 -2.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2633 -0.9 -2.7 RhtB family transporter compare
Atu3429 -0.9 -1.6 hypothetical protein compare
Atu3162 -0.9 -4.6 LacI family transcriptional regulator compare
Atu2548 -0.9 -6.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu4501 -0.9 -5.8 hypothetical protein compare
Atu2238 -0.9 -4.7 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu2532 -0.9 -3.7 transcriptional regulator, MarR family compare
Atu1904 -0.9 -2.1 transcriptional regulator compare
Atu2125 -0.9 -0.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu4792 -0.9 -2.3 hypothetical protein compare
Atu4702 -0.9 -4.1 GntR family transcriptional regulator compare
Atu0361 -0.9 -1.4 transcriptional regulator compare
Atu1464 -0.9 -4.2 glycine cleavage system T protein, aminomethyltransferase compare
Atu1462 -0.9 -6.2 glycine cleavage system protein P2 compare
Atu2017 -0.9 -1.3 hypothetical protein compare
Atu2209 -0.8 -2.9 pyrroline-5-carboxylate reductase compare
Atu2726 -0.8 -7.2 pyruvate carboxylase compare
Atu1748 -0.8 -5.4 NIFU-like protein compare
Atu2798 -0.8 -3.6 precorrin-6y methyltransferase compare
Atu3337 -0.8 -4.6 LacI family transcriptional regulator compare
Atu1455 -0.8 -2.2 hypothetical protein compare
Atu4576 -0.8 -4.6 ROK family transcriptional regulator compare
Atu2821 -0.8 -3.8 transcriptional regulator, GntR family compare
Atu4674 -0.8 -5.2 GntR family transcriptional regulator compare
Atu3963 -0.8 -4.8 GntR family transcriptional regulator compare
Atu8115 -0.8 -3.1 Hypothetical Protein compare
Atu1774 -0.7 -3.9 ABC transporter, substrate binding protein (peptide) compare
Atu4317 -0.7 -2.4 TetR family transcriptional regulator compare
Atu3011 -0.7 -1.8 ArsR family transcriptional regulator compare
Atu1810 -0.7 -1.1 hypothetical protein compare
Atu3730 -0.7 -0.9 hypothetical protein compare
Atu4232 -0.7 -3.7 GntR family transcriptional regulator compare
Atu1463 -0.7 -3.6 glycine cleavage system component H compare
Atu2376 -0.7 -0.6 hypothetical protein compare
Atu2205 -0.7 -3.5 transcriptional regulator, MarR family compare
Atu1779 -0.7 -1.9 hypothetical protein compare
Atu3496 -0.7 -2.7 hypothetical protein compare
Atu0718 -0.7 -2.5 hypothetical protein compare
Atu1419 -0.7 -3.2 transcriptional regulator, GntR family compare
Atu2067 -0.7 -0.8 hypothetical protein compare
Atu1286 -0.7 -3.9 hypothetical protein compare
Atu4882 -0.7 -1.4 hypothetical protein compare
Atu1354 -0.7 -0.7 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu8138 -0.6 -1.3 hypothetical protein compare
Atu2555 -0.6 -2.9 L-lysine 2,3-aminomutase compare
Atu0939 -0.6 -1.9 PemI protein compare
Atu2191 -0.6 -2.2 transcriptional regulator, LysR family compare
Atu2662 -0.6 -1.0 acetyltransferase compare
Atu3466 -0.6 -1.7 ArsR family transcriptional regulator compare
Atu2123 -0.6 -1.9 methylenetetrahydrofolate reductase compare
Atu0190 -0.6 -3.5 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3413 -0.6 -2.3 AsnC family transcriptional regulator compare
Atu1457 -0.6 -1.5 hypothetical protein compare
Atu4187 -0.6 -1.0 tRNA-Met compare
Atu1009 -0.6 -1.9 hypothetical protein compare
Atu2809 -0.6 -3.5 cobalamin biosynthesis protein compare
Atu0895 -0.6 -1.5 ABC transporter, substrate binding protein compare
Atu3485 -0.6 -2.9 short chain dehydrogenase compare
Atu1344 -0.6 -1.3 hypothetical protein compare
Atu4217 -0.6 -0.5 TetR family transcriptional regulator compare
Atu2796 -0.6 -3.3 precorrin-4 C11-methyltransferase compare
Atu0101 -0.6 -2.3 cytochrome c compare
Atu2800 -0.6 -1.4 precorrin-3B C17-methyltransferase compare
Atu8191 -0.6 -1.0 hypothetical protein compare
Atu0141 -0.6 -1.2 cytochrome O ubiquinol oxidase subunit I compare
Atu4191 -0.6 -2.9 GntR family transcriptional regulator compare
Atu0979 -0.5 -3.2 two component sensor kinase compare
Atu0105 -0.5 -1.8 hypothetical protein compare
Atu0189 -0.5 -1.4 ABC transporter, membrane spanning protein (peptide) compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sodium cholate hydrate in Agrobacterium fabrum C58

For carbon source Sodium cholate hydrate across organisms