Experiment set11IT005 for Agrobacterium fabrum C58

Compare to:

Sodium cholate hydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
Atu1847 +1.1 2.7 hypothetical protein compare
Atu2787 +1.0 1.8 hypothetical protein compare
Atu2433 +0.9 2.0 hypothetical protein compare
Atu5121 +0.7 5.4 two component response regulator compare
Atu3012 +0.7 1.2 hypothetical protein compare
Atu1573 +0.7 1.2 hypothetical protein compare
Atu5164 +0.6 1.3 type IV secretion protein AvhB3 compare
Atu1483 +0.6 1.9 cytochrome b561 compare
Atu1026 +0.6 2.2 hypothetical protein compare
Atu0612 +0.6 1.4 ABC transporter, membrane spanning protein compare
Atu2729 +0.6 1.6 hypothetical protein compare
Atu1952 +0.6 1.1 hypothetical protein compare
Atu0413 +0.6 1.1 stress induced protein compare
Atu0809 +0.6 1.6 hypothetical protein compare
Atu0795 +0.6 1.7 hypothetical protein compare
Atu0824 +0.6 1.1 hypothetical protein compare
Atu1968 +0.5 1.4 hypothetical protein compare
Atu1387 +0.5 2.0 transcriptional regulator, GntR family compare
Atu0142 +0.5 1.5 cytochrome o ubiquinol oxidase subunit II compare
Atu1291 +0.5 1.9 hypothetical protein compare
Atu3001 +0.5 1.1 hypothetical protein compare
Atu0280 +0.5 1.3 hypothetical protein compare
Atu2677 +0.5 1.9 protein tyrosine phosphatase compare
Atu2193 +0.5 0.8 hypothetical protein compare
Atu1149 +0.5 1.1 adenylate cyclase compare
Atu2084 +0.5 0.6 hypothetical protein compare
Atu0755 +0.5 1.4 hypothetical protein compare
Atu4406 +0.5 1.1 periplasmic nitrate reductase, ferredoxin-like protein compare
Atu3632 +0.4 1.6 hypothetical protein compare
Atu2235 +0.4 1.3 hypothetical protein compare
Atu5186 +0.4 1.7 hypothetical protein compare
Atu8032 +0.4 1.7 hypothetical protein compare
Atu0276 +0.4 2.1 hypothetical protein compare
Atu0953 +0.4 0.8 hypothetical protein compare
Atu1747 +0.4 1.8 hypothetical protein compare
Atu3208 +0.4 1.9 malate dehydrogenase compare
Atu0540 +0.4 0.8 hypothetical protein compare
Atu1896 +0.4 2.3 hypothetical protein compare
Atu3653 +0.4 2.3 hypothetical protein compare
Atu2057 +0.4 1.3 DNA helicase II compare
Atu2294 +0.4 1.9 aminoglycoside N6'-acetyltransferase compare
Atu5489 +0.4 1.3 hypothetical protein compare
Atu2293 +0.4 1.1 hypothetical protein compare
Atu8195 +0.4 0.7 hypothetical protein compare
Atu1694 +0.4 1.2 hypothetical protein compare
Atu4445 +0.4 2.4 ABC transporter permease compare
Atu0976 +0.4 1.3 cycL protein compare
Atu1782 +0.4 2.2 hypothetical protein compare
Atu0561 +0.4 2.9 flagellar motor switch protein compare
Atu2788 +0.4 1.9 citrate lyase, beta subunit compare
Atu0905 +0.4 1.4 dnaK suppressor protein compare
Atu0026 +0.4 0.6 hypothetical protein compare
Atu5527 +0.4 2.4 NADH-dependent FMN reductase compare
Atu5057 +0.4 1.3 hypothetical protein compare
Atu8154 +0.4 2.1 Plasmid stabilization system protein compare
Atu4879 +0.4 2.4 hypothetical protein compare
Atu1892 +0.4 1.4 hypothetical protein compare
Atu0780 +0.4 2.9 hypothetical protein compare
Atu1973 +0.4 1.5 hypothetical protein compare
Atu1737 +0.4 1.5 hypothetical protein compare
Atu1501 +0.4 1.6 hypothetical protein compare
Atu3506 +0.3 1.4 hypothetical protein compare
Atu0924 +0.3 2.2 hypothetical protein compare
Atu2407 +0.3 1.3 urease gamma subunit compare
Atu4290 +0.3 1.0 hypothetical protein compare
Atu1068 +0.3 2.3 hypothetical protein compare
Atu4389 +0.3 1.8 nitric oxide reductase, cytochrome c-containing subunit compare
Atu8156 +0.3 1.7 hypothetical protein compare
Atu3031 +0.3 0.7 hypothetical protein compare
Atu8150 +0.3 2.0 hypothetical protein compare
Atu0153 +0.3 1.6 transcriptional regulator, Fur family compare
Atu1052 +0.3 1.4 hypothetical protein compare
Atu8151 +0.3 1.0 hypothetical protein compare
Atu0572 +0.3 1.5 hypothetical protein compare
Atu1742 +0.3 2.0 hypothetical protein compare
Atu1054 +0.3 1.8 hypothetical protein compare
Atu2634 +0.3 1.1 hypothetical protein compare
Atu2605 +0.3 1.3 hypothetical protein compare
Atu4894 +0.3 1.8 transposase compare
Atu8153 +0.3 1.7 hypothetical protein compare
Atu0546 +0.3 2.4 flagellar biosynthetic protein compare
Atu2216 +0.3 2.1 Xaa-Pro dipeptidase compare
Atu2388 +0.3 2.0 ABC transporter, nucleotide binding/ATPase protein (nitrate) compare
Atu1500 +0.3 1.4 rare lipoprotein A compare
Atu4133 +0.3 1.1 hypothetical protein compare
Atu0841 +0.3 2.0 hypothetical protein compare
Atu1830 +0.3 1.1 bacterioferritin comigratory protein compare
Atu1864 +0.3 1.2 putative homoserine/homoserine lactone efflux protein compare
Atu1558 +0.3 1.6 permease compare
Atu4072 +0.3 0.6 nodulation protein N compare
Atu1325 +0.3 1.5 acetyltransferase compare
Atu2465 +0.3 1.3 two component sensor kinase compare
Atu2110 +0.3 1.9 sarcosine oxidase compare
Atu0554 +0.3 2.2 flagellar basal-body rod protein compare
Atu1852 +0.3 1.8 hypothetical protein compare
Atu4407 +0.3 1.0 periplasmic nitrate reductase, NapD protein compare
Atu4896 +0.3 0.6 acetyltransferase compare
Atu3537 +0.3 1.4 hypothetical protein compare
Atu0525 +0.3 1.3 transcriptional regulator, LuxR family compare
Atu2220 +0.3 1.8 hypothetical protein compare
Atu0997 +0.3 1.4 hypothetical protein compare
Atu8169 +0.3 1.4 hypothetical protein compare
Atu0555 +0.3 2.4 flagellar basal-body rod protein FlgB compare
Atu3071 +0.3 1.6 hypothetical protein compare
Atu0564 +0.3 2.1 flagellar biosynthetic protein compare
Atu8121 +0.3 2.0 hypothetical protein compare
Atu2130 +0.3 1.4 hypothetical protein compare
Atu1177 +0.3 1.5 hypothetical protein compare
Atu8170 +0.3 2.0 hypothetical protein compare
Atu0470 +0.3 0.8 hypothetical protein compare
Atu3657 +0.3 1.9 hypothetical protein compare
Atu0496 +0.3 1.5 hypothetical protein compare
Atu3616 +0.3 1.5 hypothetical protein compare
Atu0363 +0.3 2.1 putative tRNA (guanine-N(7)-)-methyltransferase compare
Atu1082 +0.3 1.6 branched-chain amino acid permease compare
Atu0677 +0.3 1.0 hypothetical protein compare
Atu8033 +0.3 1.7 hypothetical protein compare
Atu0271 +0.3 1.6 transcriptional regulator, GntR family compare
Atu1125 +0.3 1.4 ABC transporter, membrane spanning protein compare
Atu4202 +0.3 1.8 methyltransferase compare
Atu1914 +0.3 2.0 ATPase, AAA family protein compare
Atu0547 +0.3 1.6 flagellar protein compare
Atu1243 +0.3 1.8 streptomycin resistance protein compare
Atu1641 +0.3 1.8 hypothetical protein compare
Atu3510 +0.3 1.0 amidohydrolase compare
Atu2441 +0.3 0.7 RNA methylase compare
Atu4866 +0.3 1.1 hypothetical protein compare
Atu0782 +0.3 1.7 hypothetical protein compare
Atu3568 +0.3 2.1 hypothetical protein compare
Atu1816 +0.3 1.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu3442 +0.3 1.8 oligopeptide ABC transporter substrate-binding protein compare
Atu0593 +0.3 1.8 ABC transporter, membrane spanning protein compare
Atu3052 +0.3 1.0 MarR family transcriptional regulator compare
Atu1817 +0.3 1.9 hypothetical protein compare
Atu1954 +0.3 1.6 hypothetical protein compare
Atu1390 +0.3 1.7 ABC transporter, membrane spanning protein compare
Atu8022 +0.3 0.9 hypothetical protein compare
Atu2042 +0.3 1.3 short chain dehydrogenase compare
Atu4532 +0.3 1.6 shikimate 5-dehydrogenase compare
Atu5481 +0.3 1.5 ABC transporter membrane spanning protein compare
Atu1494 +0.3 1.2 metal dependent hydrolase compare
Atu2464 +0.3 0.9 formyltetrahydrofolate deformylase compare
Atu1230 +0.3 1.4 hypothetical protein compare
Atu1734 +0.3 0.8 hypothetical protein compare
Atu0903 +0.3 1.5 hypothetical protein compare
Atu0925 +0.3 0.9 hypothetical protein compare
Atu0834 +0.3 1.9 hypothetical protein compare
Atu0559 +0.3 1.8 hypothetical protein compare
Atu4543 +0.3 1.2 LysR family transcriptional regulator compare
Atu1499 +0.2 1.5 penicillin binding protein compare
Atu2335 +0.2 0.5 hypothetical protein compare
Atu2069 +0.2 0.9 hypothetical protein compare
Atu1865 +0.2 1.3 hypothetical protein compare
Atu0985 +0.2 1.5 permease compare
Atu3953 +0.2 1.2 hydroxyproline-2-epimerase compare
Atu2004 +0.2 1.4 hypothetical protein compare
Atu0851 +0.2 1.0 hypothetical protein compare
Atu0904 +0.2 0.9 hypothetical protein compare
Atu5010 +0.2 1.1 hypothetical protein compare
Atu1566 +0.2 0.3 hypothetical protein compare
Atu8202 +0.2 0.8 hypothetical protein compare
Atu3393 +0.2 1.4 pseudoazurin compare
Atu8029 +0.2 0.6 hypothetical protein compare
Atu2063 +0.2 0.8 hypothetical protein compare
Atu0557 +0.2 1.9 flagellum-specific ATP synthase compare
Atu0570 +0.2 2.0 Chemotaxis protein compare
Atu1150 +0.2 1.6 hypothetical protein compare
Atu1888 +0.2 1.9 two component sensor kinase compare
Atu0524 +0.2 1.6 transcriptional regulator, LuxR family compare
Atu5538 +0.2 1.1 hypothetical protein compare
Atu4496 +0.2 1.3 acetyltransferase compare
Atu5169 +0.2 1.1 type IV secretion protein AvhB8 compare
Atu5173 +0.2 0.9 dehydrogenase compare
Atu1887 +0.2 1.5 succinoglycan biosynthesis protein compare
Atu3400 +0.2 1.4 hypothetical protein compare
Atu1626 +0.2 1.0 NAD dependent epimerase/dehydratase family protein compare
Atu3169 +0.2 1.3 sorbitol/mannitol ABC transporter permease compare
Atu0563 +0.2 1.9 flagellar motor switch protein FliG compare
Atu0381 +0.2 1.1 hypothetical protein compare
Atu2158 +0.2 1.5 hypothetical protein compare
Atu2322 +0.2 1.4 hypothetical protein compare
Atu2680 +0.2 1.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu3999 +0.2 0.6 dithiobiotin synthetase compare
Atu0530 +0.2 1.5 UDP-galactose 4-epimerase compare
Atu3461 +0.2 0.6 GntR family transcriptional regulator compare
Atu3662 +0.2 1.9 hypothetical protein compare
Atu0942 +0.2 1.8 MFS permease compare
Atu0551 +0.2 1.3 flagellar protein FLGA precursor compare
Atu2280 +0.2 1.7 ABC transporter, membrane spanning protein (proline/glycine betaine) compare
Atu4410 +0.2 1.2 periplasmic nitrate reductase, cytochrome c-type protein compare
Atu1366 +0.2 1.5 hypothetical protein compare
Atu1117 +0.2 1.6 hypothetical protein compare
Atu2343 +0.2 1.3 acetyltransferase compare
Atu4274 +0.2 1.3 hypothetical protein compare
Atu3911 +0.2 1.2 hypothetical protein compare
Atu5444 +0.2 1.5 short-chain dehydrogenase compare
Atu0382 +0.2 1.0 hypothetical protein compare
Atu2708 +0.2 1.3 MFS permease compare
Atu3635 +0.2 2.0 amidohydrolase compare
Atu0523 +0.2 1.9 flagellar M-ring protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sodium cholate hydrate in Agrobacterium fabrum C58

For carbon source Sodium cholate hydrate across organisms