Experiment set10TCH445 for Dickeya dianthicola ME23

Compare to:

3.75mM_PTB

200 most important genes:

  gene name fitness t score description  
DZA65_RS04310 -3.2 -12.0 Dyp-type peroxidase compare
DZA65_RS20165 -2.8 -13.8 miniconductance mechanosensitive channel MscM compare
DZA65_RS09455 -2.6 -7.1 DUF3413 domain-containing protein compare
DZA65_RS21445 -2.4 -3.9 Si-specific NAD(P)(+) transhydrogenase compare
DZA65_RS00800 -2.3 -7.9 O-antigen ligase family protein compare
DZA65_RS21610 -2.2 -8.2 envelope stress response regulator transcription factor CpxR compare
DZA65_RS06900 -2.1 -2.9 colicin uptake protein TolR compare
DZA65_RS01525 -2.1 -5.5 LPS export ABC transporter periplasmic protein LptC compare
DZA65_RS05860 -2.0 -3.9 preprotein translocase subunit YajC compare
DZA65_RS22735 -1.8 -2.4 hypothetical protein compare
DZA65_RS19685 -1.8 -2.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
DZA65_RS01350 -1.6 -2.3 DNA-binding transcriptional regulator Fis compare
DZA65_RS18600 -1.5 -2.4 DUF1330 domain-containing protein compare
DZA65_RS21090 -1.4 -2.0 tyrosine recombinase XerC compare
DZA65_RS05500 -1.4 -3.1 molecular chaperone Skp compare
DZA65_RS02300 -1.4 -2.8 type-1Ba cytolytic delta-endotoxin compare
DZA65_RS07070 -1.4 -9.4 outer membrane assembly protein AsmA compare
DZA65_RS13570 -1.4 -4.0 glycine zipper 2TM domain-containing protein compare
DZA65_RS18160 -1.3 -2.5 glycerate kinase compare
DZA65_RS20805 -1.3 -1.8 intracellular growth attenuator family protein compare
DZA65_RS00845 -1.2 -1.6 protein-export chaperone SecB compare
DZA65_RS01050 -1.2 -7.8 Trk system potassium transporter TrkH compare
DZA65_RS15480 -1.1 -5.4 phosphohistidine phosphatase SixA compare
DZA65_RS18785 -1.1 -1.6 hypothetical protein compare
DZA65_RS06495 -1.1 -4.4 M15 family metallopeptidase compare
DZA65_RS17255 -1.1 -2.2 ribonuclease HI compare
DZA65_RS02505 -1.1 -2.1 peptide chain release factor 3 compare
DZA65_RS12745 -1.1 -3.4 sodium-potassium/proton antiporter ChaA compare
DZA65_RS20550 -1.1 -2.3 sulfurtransferase complex subunit TusC compare
DZA65_RS16635 -1.1 -2.0 outer membrane protein assembly factor BamB compare
DZA65_RS18775 -1.0 -1.4 phage tail protein compare
DZA65_RS04215 -1.0 -3.1 SsrA-binding protein SmpB compare
DZA65_RS18105 -1.0 -2.8 6-carboxytetrahydropterin synthase QueD compare
DZA65_RS19665 -1.0 -3.5 protease modulator HflC compare
DZA65_RS17880 -1.0 -2.5 glycine betaine/L-proline ABC transporter permease ProW compare
DZA65_RS11840 -1.0 -5.1 protease HtpX compare
DZA65_RS06990 -1.0 -7.0 UDP-glucose 4-epimerase GalE compare
DZA65_RS22005 -1.0 -5.7 inorganic phosphate transporter PitA compare
DZA65_RS19670 -1.0 -3.5 FtsH protease activity modulator HflK compare
DZA65_RS18060 -0.9 -4.1 adenylyl-sulfate kinase compare
DZA65_RS13605 -0.9 -4.2 purine nucleoside phosphoramidase compare
DZA65_RS16835 -0.9 -5.6 membrane-bound lytic murein transglycosylase MltF compare
DZA65_RS22985 -0.9 -1.7 hypothetical protein compare
DZA65_RS05310 -0.9 -4.7 thymidylate synthase compare
DZA65_RS17400 -0.9 -4.3 glutamate--cysteine ligase compare
DZA65_RS14295 -0.9 -2.2 DUF2594 family protein compare
DZA65_RS15625 -0.9 -2.3 membrane protein YpdK compare
DZA65_RS01500 -0.9 -4.3 PTS IIA-like nitrogen regulatory protein PtsN compare
DZA65_RS20220 -0.9 -6.8 glucose-6-phosphate isomerase compare
DZA65_RS14145 -0.9 -2.0 hypothetical protein compare
DZA65_RS01670 -0.9 -3.9 DnaA initiator-associating protein DiaA compare
DZA65_RS03230 -0.9 -1.4 transcription termination/antitermination protein NusA compare
DZA65_RS06895 -0.8 -3.2 Tol-Pal system protein TolQ compare
DZA65_RS11435 -0.8 -2.1 redox-regulated ATPase YchF compare
DZA65_RS10550 -0.8 -2.6 murein DD-endopeptidase MepM compare
DZA65_RS07435 -0.8 -2.7 As(III)-sensing metalloregulatory transcriptional repressor ArsR compare
DZA65_RS12245 -0.8 -1.7 type III secretion system export apparatus subunit SctS compare
DZA65_RS01495 -0.8 -3.7 RNase adapter RapZ compare
DZA65_RS13040 -0.8 -2.8 LapA family protein compare
DZA65_RS13385 -0.8 -2.3 cell division protein ZapC compare
DZA65_RS11585 -0.8 -3.3 septum site-determining protein MinC compare
DZA65_RS22705 -0.8 -2.4 membrane protein insertion efficiency factor YidD compare
DZA65_RS20940 -0.8 -1.8 cold-shock protein compare
DZA65_RS00095 -0.8 -1.7 AsnC family transcriptional regulator compare
DZA65_RS20555 -0.8 -1.6 sulfurtransferase complex subunit TusD compare
DZA65_RS11900 -0.8 -1.1 hypothetical protein compare
DZA65_RS19195 -0.7 -1.9 leu operon leader peptide compare
DZA65_RS06005 -0.7 -3.1 trigger factor compare
DZA65_RS21525 -0.7 -4.6 aquaporin family protein compare
DZA65_RS21080 -0.7 -4.5 DNA helicase II compare
DZA65_RS22840 -0.7 -1.1 hypothetical protein compare
DZA65_RS19680 -0.7 -4.0 RNA chaperone Hfq compare
DZA65_RS13330 -0.7 -3.6 AI-2E family transporter YdiK compare
DZA65_RS00835 -0.7 -4.1 murein hydrolase activator EnvC compare
DZA65_RS07315 -0.7 -2.7 transposase compare
DZA65_RS06660 -0.7 -1.6 tRNA-Met compare
DZA65_RS16640 -0.7 -2.0 YfgM family protein compare
DZA65_RS00840 -0.7 -2.8 rhodanese-like domain-containing protein compare
DZA65_RS10720 -0.7 -2.3 GlsB/YeaQ/YmgE family stress response membrane protein compare
DZA65_RS03260 -0.7 -3.1 lipoprotein NlpI compare
DZA65_RS12975 -0.7 -2.5 peptide ABC transporter ATP-binding protein SapF compare
DZA65_RS13595 -0.7 -1.9 penicillin-binding protein activator LpoB compare
DZA65_RS12770 -0.7 -1.4 acid resistance repetitive basic protein Asr compare
DZA65_RS17625 -0.6 -2.3 acyl carrier protein compare
DZA65_RS19505 -0.6 -5.6 MDR efflux pump AcrAB transcriptional activator RobA compare
DZA65_RS12955 -0.6 -3.1 peptide ABC transporter substrate-binding protein SapA compare
DZA65_RS11550 -0.6 -2.0 fatty acid metabolism transcriptional regulator FadR compare
DZA65_RS01320 -0.6 -1.6 ASCH domain-containing protein compare
DZA65_RS14345 -0.6 -1.4 AlpA family transcriptional regulator compare
DZA65_RS18920 -0.6 -2.1 D-threonate 4-phosphate dehydrogenase compare
DZA65_RS14990 -0.6 -4.2 transcriptional regulator LrhA compare
DZA65_RS00740 -0.6 -1.2 nucleoid occlusion factor SlmA compare
DZA65_RS05260 -0.6 -3.4 DUF2884 domain-containing protein compare
DZA65_RS09190 -0.6 -2.0 glutamine ABC transporter ATP-binding protein GlnQ compare
DZA65_RS12505 -0.6 -3.1 carboxy terminal-processing peptidase compare
DZA65_RS13880 -0.6 -2.9 flagellar export chaperone FliS compare
DZA65_RS03265 -0.6 -1.1 protein YrbN compare
DZA65_RS02940 -0.6 -2.5 DedA family protein compare
DZA65_RS06285 -0.6 -2.0 MFS transporter compare
DZA65_RS18080 -0.6 -1.7 phosphoadenylyl-sulfate reductase compare
DZA65_RS00530 -0.6 -0.9 DUF1471 domain-containing protein compare
DZA65_RS08035 -0.6 -2.4 CRISPR-associated endonuclease Cas2 compare
DZA65_RS20130 -0.6 -1.8 ATP-binding cassette domain-containing protein compare
DZA65_RS00030 -0.6 -2.4 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ compare
DZA65_RS17270 -0.6 -4.9 murein transglycosylase D compare
DZA65_RS01760 -0.6 -4.4 cell division protein FtsP compare
DZA65_RS03210 -0.6 -1.1 preprotein translocase subunit SecG compare
DZA65_RS08090 -0.6 -2.4 DHA2 family efflux MFS transporter permease subunit compare
DZA65_RS02800 -0.6 -2.3 helix-turn-helix transcriptional regulator compare
DZA65_RS05295 -0.6 -1.3 RNA pyrophosphohydrolase compare
DZA65_RS10475 -0.6 -1.8 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
DZA65_RS04015 -0.6 -2.2 hypothetical protein compare
DZA65_RS22610 -0.6 -4.1 UDP-4-amino-4-deoxy-L-arabinose aminotransferase compare
DZA65_RS15655 -0.6 -2.6 type II secretion system minor pseudopilin GspI compare
DZA65_RS21270 -0.5 -4.8 ATP-dependent RNA helicase RhlB compare
DZA65_RS21790 -0.5 -1.2 sulfurtransferase TusA compare
DZA65_RS09270 -0.5 -1.6 hypothetical protein compare
DZA65_RS14875 -0.5 -1.9 hydrogenase maturation nickel metallochaperone HypA compare
DZA65_RS00980 -0.5 -4.1 Sec-independent protein translocase subunit TatC compare
DZA65_RS20355 -0.5 -2.2 Trk system potassium transporter TrkA compare
DZA65_RS03355 -0.5 -1.3 hypothetical protein compare
DZA65_RS10915 -0.5 -2.1 septation protein A compare
DZA65_RS21265 -0.5 -1.5 thioredoxin TrxA compare
DZA65_RS07980 -0.5 -0.9 phosphonate C-P lyase system protein PhnL compare
DZA65_RS05930 -0.5 -2.7 tRNA 4-thiouridine(8) synthase ThiI compare
DZA65_RS11565 -0.5 -1.5 disulfide bond formation protein DsbB compare
DZA65_RS01355 -0.5 -3.4 tRNA dihydrouridine synthase DusB compare
DZA65_RS05490 -0.5 -3.6 sigma E protease regulator RseP compare
DZA65_RS12310 -0.5 -1.7 amino acid ABC transporter ATP-binding protein compare
DZA65_RS22880 -0.5 -1.5 YciY family protein compare
DZA65_RS03775 -0.5 -1.2 MarR family transcriptional regulator compare
DZA65_RS18295 -0.5 -4.3 outer membrane protein assembly factor compare
DZA65_RS11275 -0.5 -1.0 hypothetical protein compare
DZA65_RS22640 -0.5 -3.2 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
DZA65_RS09380 -0.5 -2.4 hypothetical protein compare
DZA65_RS11590 -0.5 -2.6 septum site-determining protein MinD compare
DZA65_RS04615 -0.5 -2.5 alpha/beta hydrolase compare
DZA65_RS10030 -0.5 -1.3 imidazole glycerol phosphate synthase subunit HisF compare
DZA65_RS21605 -0.5 -2.5 stress resistance protein compare
DZA65_RS02245 -0.5 -1.0 transketolase compare
DZA65_RS18065 -0.5 -2.9 sulfate adenylyltransferase subunit CysN compare
DZA65_RS09460 -0.5 -1.2 YejL family protein compare
DZA65_RS13755 -0.5 -2.6 glucan biosynthesis protein G compare
DZA65_RS00810 -0.5 -1.6 putative lipopolysaccharide heptosyltransferase III compare
DZA65_RS12985 -0.5 -1.2 hypothetical protein compare
DZA65_RS22295 -0.5 -4.2 ribokinase compare
DZA65_RS05995 -0.5 -3.5 hypothetical protein compare
DZA65_RS11930 -0.5 -1.0 type I toxin-antitoxin system SymE family toxin compare
DZA65_RS11830 -0.5 -2.7 DNA-binding transcriptional regulator KdgR compare
DZA65_RS08855 -0.5 -1.0 hypothetical protein compare
DZA65_RS16050 -0.5 -3.0 exopolyphosphatase compare
DZA65_RS11865 -0.5 -1.3 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS15380 -0.5 -2.5 4-phosphoerythronate dehydrogenase PdxB compare
DZA65_RS13450 -0.5 -3.7 aspartate/tyrosine/aromatic aminotransferase compare
DZA65_RS22620 -0.5 -4.2 bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA compare
DZA65_RS07065 -0.5 -1.2 dCTP deaminase compare
DZA65_RS21755 -0.5 -2.4 cell division protein FtsX compare
DZA65_RS01710 -0.5 -0.9 outer membrane channel protein TolC compare
DZA65_RS09845 -0.5 -2.1 arginine ABC transporter ATP-binding protein ArtP compare
DZA65_RS21440 -0.5 -3.9 HTH-type transcriptional repressor FabR compare
DZA65_RS13085 -0.5 -1.4 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS19090 -0.5 -1.2 DUF721 domain-containing protein compare
DZA65_RS16105 -0.5 -1.6 CoA-binding protein compare
DZA65_RS05775 -0.5 -1.9 pyrimidine/purine nucleoside phosphorylase compare
DZA65_RS00420 -0.5 -2.6 FtsX-like permease family protein compare
DZA65_RS06215 -0.5 -1.5 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK compare
DZA65_RS05550 -0.5 -2.4 Rho-binding antiterminator compare
DZA65_RS17890 -0.5 -2.6 AzlC family ABC transporter permease compare
DZA65_RS04535 -0.5 -3.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
DZA65_RS06115 -0.5 -4.0 multidrug efflux RND transporter permease subunit compare
DZA65_RS16245 -0.4 -1.3 amino acid ABC transporter permease compare
DZA65_RS21530 -0.4 -3.3 glycerol kinase GlpK compare
DZA65_RS22775 -0.4 -1.2 hypothetical protein compare
DZA65_RS07865 -0.4 -1.0 hydrogenase maturation factor HybG compare
DZA65_RS15285 -0.4 -1.8 phosphate acetyltransferase compare
DZA65_RS09050 -0.4 -2.5 endonuclease/exonuclease/phosphatase family protein compare
DZA65_RS09990 -0.4 -0.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
DZA65_RS13975 -0.4 -3.1 flagellar basal body P-ring protein FlgI compare
DZA65_RS17070 -0.4 -2.8 sulfate ABC transporter permease subunit CysT compare
DZA65_RS06600 -0.4 -2.0 amino acid ABC transporter ATP-binding protein compare
DZA65_RS10625 -0.4 -2.7 DNA/RNA non-specific endonuclease compare
DZA65_RS09075 -0.4 -3.1 ATP-dependent RNA helicase RhlE compare
DZA65_RS22875 -0.4 -0.6 hypothetical protein compare
DZA65_RS08645 -0.4 -1.4 DUF1272 domain-containing protein compare
DZA65_RS04270 -0.4 -2.1 YaiI/YqxD family protein compare
DZA65_RS16925 -0.4 -0.8 anti-sigma-E factor RseA compare
DZA65_RS15610 -0.4 -0.8 hotdog fold thioesterase compare
DZA65_RS14880 -0.4 -1.4 hydrogenase-2 assembly chaperone compare
DZA65_RS08190 -0.4 -1.7 LacI family DNA-binding transcriptional regulator compare
DZA65_RS18320 -0.4 -1.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS08225 -0.4 -2.8 winged helix-turn-helix transcriptional regulator compare
DZA65_RS02200 -0.4 -0.9 hypothetical protein compare
DZA65_RS11880 -0.4 -2.2 two-component system response regulator PhoP compare
DZA65_RS21130 -0.4 -2.9 uroporphyrinogen-III C-methyltransferase compare
DZA65_RS10555 -0.4 -0.8 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
DZA65_RS19955 -0.4 -1.5 nitrogen fixation protein NifW compare
DZA65_RS20835 -0.4 -2.4 two-component system sensor histidine kinase EnvZ compare
DZA65_RS01675 -0.4 -1.9 YraN family protein compare
DZA65_RS14010 -0.4 -2.1 flagellar basal body rod protein FlgB compare
DZA65_RS10785 -0.4 -2.7 DNA topoisomerase III compare


Specific Phenotypes

For 2 genes in this experiment

For stress potassium_tetraborate in Dickeya dianthicola ME23

For stress potassium_tetraborate across organisms