Experiment set10S175 for Escherichia coli BL21

Compare to:

L-Rhamnose

200 most important genes:

  gene name fitness t score description  
ECD_04264 -6.6 -8.1 3-phosphoserine phosphatase compare
ECD_03687 -6.4 -3.9 site-specific tyrosine recombinase compare
ECD_00073 -5.9 -4.7 3-isopropylmalate dehydratase small subunit compare
ECD_01926 -5.8 -4.4 N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase compare
ECD_00004 -5.6 -7.8 L-threonine synthase compare
ECD_03238 -5.5 -3.8 D-ribulose-5-phosphate 3-epimerase compare
ECD_02607 -5.4 -2.5 phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent compare
ECD_02443 -5.3 -5.9 serine hydroxymethyltransferase compare
ECD_00075 -5.0 -13.7 3-isopropylmalate dehydrogenase, NAD(+)-dependent compare
ECD_00912 -4.6 -8.4 5-enolpyruvylshikimate-3-phosphate synthetase compare
ECD_02399 -4.5 -6.1 GMP synthetase (glutamine aminotransferase) compare
ECD_03652 -4.5 -17.8 ketol-acid reductoisomerase, NAD(P)-binding compare
ECD_03241 -4.4 -10.4 3-dehydroquinate synthase compare
ECD_03845 -4.4 -10.2 argininosuccinate lyase compare
ECD_00911 -4.2 -7.8 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
ECD_03755 -4.2 -12.1 glutamine synthetase compare
ECD_00473 -4.2 -7.1 N5-carboxyaminoimidazole ribonucleotide mutase compare
ECD_00240 -4.2 -10.6 gamma-glutamylphosphate reductase compare
ECD_00074 -4.1 -12.0 3-isopropylmalate dehydratase large subunit compare
ECD_03708 -4.1 -17.6 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase compare
ECD_00002 -4.0 -16.2 Bifunctional aspartokinase/homoserine dehydrogenase 1 compare
ECD_03827 -4.0 -12.7 5,10-methylenetetrahydrofolate reductase compare
ECD_03132 -4.0 -3.3 dehydroshikimate reductase, NAD(P)-binding compare
ECD_04299 -4.0 -5.5 Mn(2)-response protein, MntR-repressed compare
ECD_03883 -3.9 -14.4 IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase compare
ECD_03788 -3.9 -14.9 rhamnulose-1-phosphate aldolase conserved
ECD_01923 -3.9 -5.3 histidinol-phosphate aminotransferase compare
ECD_01924 -3.8 -3.4 histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase compare
ECD_00003 -3.8 -6.0 homoserine kinase compare
ECD_01058 -3.8 -3.7 dihydro-orotase compare
ECD_03648 -3.8 -15.4 branched-chain amino acid aminotransferase compare
ECD_02237 -3.8 -8.9 amidophosphoribosyltransferase compare
ECD_02254 -3.8 -2.6 chorismate synthase compare
ECD_00333 -3.7 -9.5 pyrroline-5-carboxylate reductase, NAD(P)-binding compare
ECD_00680 -3.7 -10.2 citrate synthase compare
ECD_03649 -3.7 -17.3 dihydroxyacid dehydratase compare
ECD_00472 -3.7 -9.1 N5-carboxyaminoimidazole ribonucleotide synthase compare
ECD_04120 -3.6 -13.1 ornithine carbamoyltransferase 1 compare
ECD_03797 -3.6 -6.4 sensory histidine kinase in two-component regulatory system with CpxR compare
ECD_01234 -3.6 -2.3 tryptophan synthase, alpha subunit compare
ECD_03038 -3.6 -9.7 argininosuccinate synthetase compare
ECD_01235 -3.5 -5.7 tryptophan synthase, beta subunit compare
ECD_02301 -3.5 -7.1 manganese/divalent cation transporter conserved
ECD_02744 -3.5 -12.4 D-3-phosphoglycerate dehydrogenase compare
ECD_01925 -3.5 -2.5 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
ECD_02743 -3.4 -8.8 5-formyltetrahydrofolate cyclo-ligase family protein compare
ECD_02449 -3.3 -14.4 phosphoribosylformyl-glycineamide synthetase compare
ECD_02400 -3.3 -6.5 IMP dehydrogenase compare
ECD_00053 -3.3 -5.9 diadenosine tetraphosphatase compare
ECD_03731 -3.3 -5.9 TatABCE protein translocation system subunit compare
ECD_00037 -3.3 -13.2 carbamoyl-phosphate synthase large subunit compare
ECD_02726 -3.3 -7.2 site-specific tyrosine recombinase compare
ECD_03650 -3.2 -11.7 l-threonine dehydratase, biosynthetic; also known as threonine deaminase compare
ECD_03843 -3.2 -16.5 N-acetyl-gamma-glutamylphosphate reductase, NAD(P)-binding compare
ECD_00239 -3.2 -5.6 gamma-glutamate kinase compare
ECD_03882 -3.0 -10.5 phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase compare
ECD_03844 -3.0 -8.1 acetylglutamate kinase compare
ECD_03842 -2.9 -14.9 acetylornithine deacetylase compare
ECD_03646 -2.9 -14.7 acetolactate synthase II, valine insensitive, large subunit compare
ECD_01258 -2.9 -2.7 orotidine-5'-phosphate decarboxylase compare
ECD_01167 -2.8 -2.4 murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A compare
ECD_00076 -2.8 -9.1 2-isopropylmalate synthase compare
ECD_03841 -2.8 -12.6 phosphoenolpyruvate carboxylase compare
ECD_02666 -2.7 -12.7 amino acid N-acetyltransferase and inactive acetylglutamate kinase compare
ECD_01922 -2.7 -4.2 bifunctional histidinal dehydrogenase/ histidinol dehydrogenase compare
ECD_00056 -2.7 -8.0 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent compare
ECD_02694 -2.7 -1.5 putative LuxR family transcriptional regulator compare
ECD_02488 -2.7 -4.8 chorismate mutase and prephenate dehydratase, P-protein compare
ECD_03257 -2.7 -3.3 response regulator in two-component regulatory system with EnvZ compare
ECD_03097 -2.7 -6.7 l-arginine-responsive arginine metabolism regulon transcriptional regulator compare
ECD_00036 -2.6 -8.5 carbamoyl phosphate synthetase small subunit, glutamine amidotransferase compare
ECD_02881 -2.6 -10.2 cystathionine beta-lyase, PLP-dependent compare
ECD_04113 -2.6 -9.2 aspartate carbamoyltransferase, catalytic subunit compare
ECD_01238 -2.5 -4.2 component I of anthranilate synthase compare
ECD_03707 -2.5 -10.3 methionine biosynthesis regulon transcriptional regulator compare
ECD_02391 -2.4 -4.1 phosphoribosylaminoimidazole synthetase compare
ECD_03885 -2.4 -8.9 homoserine O-transsuccinylase compare
ECD_02951 -2.3 -1.7 antitoxinof the HigB-HigA toxin-antitoxin system compare
ECD_03555 -2.3 -11.0 acetolactate synthase 2 large subunit compare
ECD_02686 -2.3 -14.1 diaminopimelate decarboxylase, PLP-binding compare
ECD_00949 -2.3 -2.0 dihydro-orotate oxidase, FMN-linked compare
ECD_03499 -2.2 -9.7 orotate phosphoribosyltransferase compare
ECD_03825 -2.2 -10.9 cystathionine gamma-synthase, PLP-dependent compare
ECD_01928 -2.2 -3.0 phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase compare
ECD_02314 -2.1 -8.5 cysteine synthase A, O-acetylserine sulfhydrolase A subunit compare
ECD_04086 -2.1 -4.7 3'(2'),5'-bisphosphate nucleotidase compare
ECD_02238 -2.0 -2.0 colicin V production protein compare
ECD_t00083 -1.9 -1.6 tRNA-Leu compare
ECD_00081 -1.9 -4.8 transcriptional repressor-activator for carbon metabolism compare
ECD_00109 -1.9 -7.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase compare
ECD_00961 -1.9 -9.1 outer membrane protein A (3a compare
ECD_00112 -1.9 -7.7 pyruvate dehydrogenase complex repressor; autorepressor compare
ECD_00682 -1.9 -3.7 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_01957 -1.8 -2.2 GDP-mannose mannosyl hydrolase compare
ECD_t00038 -1.8 -2.0 tRNA-Arg compare
ECD_00148 -1.8 -8.5 fused glycosyl transferase and transpeptidase compare
ECD_03647 -1.7 -3.5 acetolactate synthase 2 small subunit compare
ECD_01370 -1.7 -2.2 aldehyde dehydrogenase A, NAD-linked compare
ECD_02245 -1.7 -5.5 erythronate-4-phosphate dehydrogenase compare
ECD_01801 -1.6 -10.4 carboxy-terminal protease for penicillin-binding protein 3 compare
ECD_00933 -1.6 -3.9 outer membrane porin 1a (Ia compare
ECD_00889 -1.6 -1.8 leucyl/phenylalanyl-tRNA-protein transferase compare
ECD_00684 -1.6 -5.1 succinate dehydrogenase, FeS subunit compare
ECD_02404 -1.6 -2.5 BamABCDE complex OM biogenesis lipoprotein compare
ECD_00388 -1.6 -6.4 proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases compare
ECD_01236 -1.6 -5.3 indole-3-glycerolphosphate synthetase and N-(5-phosphoribosyl)anthranilate isomerase compare
ECD_03237 -1.6 -9.6 phosphoglycolate phosphatase compare
ECD_00380 -1.5 -1.6 cytochrome o ubiquinol oxidase subunit IV compare
ECD_01825 -1.5 -4.3 pyruvate kinase II compare
ECD_00384 -1.5 -7.9 muropeptide transporter compare
ECD_01793 -1.5 -4.5 stress protein, member of the CspA-family compare
ECD_03219 -1.5 -3.1 fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase compare
ECD_03735 -1.4 -5.3 NAD(P)H-flavin reductase compare
ECD_03651 -1.4 -4.6 transcriptional activator of ilvC; autorepressor compare
ECD_02600 -1.4 -8.3 adenosine 5'-phosphosulfate kinase compare
ECD_03642 -1.4 -9.3 flhDC operon transcriptional repressor compare
ECD_02507 -1.4 -1.3 toxic UPF0083 family protein inhibitor of 70S ribosome formation compare
ECD_02765 -1.4 -3.9 transketolase 1, thiamine triphosphate-binding compare
ECD_03787 -1.4 -6.5 L-rhamnose mutarotase conserved
ECD_03643 -1.4 -6.5 UPF0438 family protein compare
ECD_02489 -1.4 -9.5 fused chorismate mutase T/prephenate dehydrogenase compare
ECD_03509 -1.3 -5.3 ATP-dependent DNA helicase compare
ECD_03036 -1.3 -1.8 transcription termination/antitermination L factor compare
ECD_00176 -1.3 -1.4 periplasmic chaperone compare
ECD_01763 -1.3 -1.9 diguanylate cyclase compare
ECD_02923 -1.3 -6.6 fused deadenylyltransferase/adenylyltransferase for glutamine synthetase conserved
ECD_01910 -1.3 -1.3 UPF0265 family protein compare
ECD_03358 -1.3 -1.4 stress response protein acid-resistance protein compare
ECD_01664 -1.3 -1.5 putative acyl-CoA dehydrogenase compare
ECD_00160 -1.2 -8.0 serine endoprotease (protease Do), membrane-associated compare
ECD_01237 -1.2 -3.2 fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase compare
ECD_01601 -1.2 -1.3 SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex compare
ECD_00402 -1.2 -1.4 nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB compare
ECD_00683 -1.2 -4.9 succinate dehydrogenase, flavoprotein subunit compare
ECD_03669 -1.2 -2.5 TDP-4-oxo-6-deoxy-D-glucose transaminase compare
ECD_02972 -1.2 -2.0 DUF805 family inner membrane protein compare
ECD_02724 -1.2 -6.4 ssDNA exonuclease, 5 compare
ECD_01307 -1.2 -1.7 murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter subunit compare
ECD_03240 -1.1 -5.8 cell division protein that binds to the septal ring compare
ECD_t00077 -1.1 -1.1 tRNA-Thr compare
ECD_03096 -1.1 -2.1 malate dehydrogenase, NAD(P)-binding compare
ECD_03106 -1.1 -4.3 ribonuclease G compare
ECD_02656 -1.1 -5.9 l-fucose operon activator compare
ECD_03756 -1.1 -5.9 GTP-binding protein compare
ECD_02465 -1.1 -7.6 anti-sigma E factor, binds RseA compare
ECD_03093 -1.1 -2.3 DUF1043 family inner membrane-anchored protein compare
ECD_02205 -1.1 -2.6 NADH:ubiquinone oxidoreductase, membrane subunit J compare
ECD_02742 -1.0 -3.0 FtsZ stabilizer compare
ECD_02736 -1.0 -2.4 glycine cleavage complex lipoylprotein compare
ECD_00329 -1.0 -1.3 anti-RssB factor, RpoS stabilzer during Pi starvation; anti-adapter protein compare
ECD_00442 -1.0 -1.0 iron export ABC transporter permease; peroxide resistance protein compare
ECD_01101 -1.0 -2.0 OM lipoprotein stimulator of MrcB transpeptidase compare
ECD_03662 -1.0 -7.6 UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase compare
ECD_03625 -1.0 -3.3 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_02396 -1.0 -1.9 uncharacterized protein compare
ECD_03583 -1.0 -7.0 gap repair protein compare
ECD_02393 -1.0 -3.9 polyphosphate kinase, component of RNA degradosome compare
ECD_04039 -1.0 -3.5 global sRNA chaperone; HF-I, host factor for RNA phage Q beta replication compare
ECD_01906 -1.0 -1.2 hypothetical protein compare
ECD_03089 -1.0 -4.3 stringent starvation protein A, phage P1 late gene activator, RNAP-associated acid-resistance protein, inactive glutathione S-transferase-like protein compare
ECD_00574 -1.0 -3.7 alkyl hydroperoxide reductase, C22 subunit compare
ECD_00434 -1.0 -1.2 putative DNA-binding transcriptional regulator compare
ECD_00423 -1.0 -3.5 gap repair protein compare
ECD_03556 -1.0 -1.7 ilvB operon leader peptide compare
ECD_01977 -0.9 -1.2 ser/thr phosphatase-related protein compare
ECD_01434 -0.9 -0.7 formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible compare
ECD_02918 -0.9 -2.6 fimbrial protein compare
ECD_03657 -0.9 -3.8 guanosine pentaphosphatase/exopolyphosphatase compare
ECD_01172 -0.9 -1.4 periplasmic trehalase compare
ECD_00014 -0.9 -1.4 chaperone Hsp70, with co-chaperone DnaJ compare
ECD_03897 -0.9 -3.1 glucosephosphate isomerase compare
ECD_03681 -0.9 -4.8 adenylate cyclase compare
ECD_01946 -0.9 -1.3 dTDP-L-rhamnose synthase, NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit compare
ECD_02300 -0.9 -2.7 DUF2502 family putative periplasmic protein compare
ECD_00383 -0.9 -5.5 cytochrome o ubiquinol oxidase subunit II compare
ECD_00940 -0.8 -1.3 aliphatic sulfonate ABC transporter periplasmic binding protein compare
ECD_02549 -0.8 -3.6 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor compare
ECD_04107 -0.8 -1.5 trehalose-6-P hydrolase compare
ECD_02893 -0.8 -2.4 antitoxin for MqsR toxin; transcriptional repressor compare
ECD_01979 -0.8 -1.8 multidrug efflux system, subunit A compare
ECD_03242 -0.8 -0.7 shikimate kinase I compare
ECD_02162 -0.8 -1.1 ferredoxin involved with ribonucleotide reductase diferric-tyrosyl radical (Y*) cofactor maintenance compare
ECD_02667 -0.8 -4.5 exonuclease V (RecBCD complex), alpha chain compare
ECD_03507 -0.8 -3.4 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
ECD_01221 -0.8 -2.2 oligopeptide ABC transporter ATPase compare
ECD_03668 -0.8 -2.7 TDP-fucosamine acetyltransferase compare
ECD_00744 -0.8 -2.2 malonyl-ACP O-methyltransferase, SAM-dependent compare
ECD_01865 -0.8 -2.4 trehalose-6-phosphate synthase compare
ECD_02608 -0.8 -2.8 sulfite reductase, beta subunit, NAD(P)-binding, heme-binding compare
ECD_00494 -0.8 -1.2 DLP12 prophage; putative recombinase compare
ECD_01668 -0.8 -1.5 putative oxidoreductase compare
ECD_02039 -0.8 -0.9 hypothetical protein compare
ECD_00803 -0.8 -0.8 repressor of biofilm formation by indole transport regulation compare
ECD_02601 -0.8 -4.5 sulfate adenylyltransferase, subunit 1 compare
ECD_01694 -0.8 -1.4 fructosamine kinase family protein compare
ECD_03308 -0.8 -1.2 PanD autocleavage accelerator, panothenate synthesis compare
ECD_00872 -0.8 -2.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; OM lipoprotein compare
ECD_03463 -0.8 -5.3 L-lactate dehydrogenase, FMN-linked compare
ECD_03790 -0.7 -5.0 rhamnulokinase compare
ECD_03220 -0.7 -1.8 small lipoprotein compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source L-Rhamnose in Escherichia coli BL21

For carbon source L-Rhamnose across organisms