Experiment set10S163 for Escherichia coli BL21

L-Arabinose

Group: carbon source
Media: M9_plus_L-Arabinose + L-Arabinose (20 mM)
Culturing: BL21_ML4, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 12/16/24

Specific Phenotypes

For 11 genes in this experiment

For carbon source L-Arabinose in Escherichia coli BL21

For carbon source L-Arabinose across organisms

SEED Subsystems

Subsystem	#Specific
L-Arabinose utilization	2
Peptidoglycan Biosynthesis	2
L-ascorbate utilization (and related gene clusters)	1
NAD and NADP cofactor biosynthesis global	1
NAD regulation	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Pentose and glucuronate interconversions
• Ascorbate and aldarate metabolism
• Ubiquinone and menaquinone biosynthesis
• Alanine and aspartate metabolism
• Nucleotide sugars metabolism
• Glycosaminoglycan degradation
• Peptidoglycan biosynthesis
• Nicotinate and nicotinamide metabolism
• Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-arabinose degradation I	4	4	2
L-lyxose degradation	4	4	1
L-ascorbate degradation I (bacterial, anaerobic)	5	5	1
NAD de novo biosynthesis I	6	5	1
NAD de novo biosynthesis IV (anaerobic)	6	5	1
peptidoglycan maturation (meso-diaminopimelate containing)	12	6	2
L-ascorbate degradation II (bacterial, aerobic)	7	7	1
nicotine biosynthesis	9	3	1
peptidoglycan recycling II	10	7	1
superpathway of nicotine biosynthesis	12	4	1
peptidoglycan recycling I	14	14	1
peptidoglycan biosynthesis IV (Enterococcus faecium)	17	12	1
peptidoglycan biosynthesis II (staphylococci)	17	12	1
superpathway of pentose and pentitol degradation	42	15	2
aspartate superpathway	25	24	1