Experiment set10S140 for Escherichia coli BL21

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L-Rhamnose

Group: carbon source
Media: M9_plus_L-Rhamnose + L-Rhamnose (20 mM)
Culturing: BL21_ML4, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 12/16/24

Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Rhamnose in Escherichia coli BL21

For carbon source L-Rhamnose across organisms

SEED Subsystems

Subsystem #Specific
L-rhamnose utilization 2
2-phosphoglycolate salvage 1
Acetoin, butanediol metabolism 1
Branched-Chain Amino Acid Biosynthesis 1
Glycolate, glyoxylate interconversions 1
Photorespiration (oxidative C2 cycle) 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
pyruvate fermentation to (R)-acetoin II 2 1 1
L-rhamnose degradation I 5 5 2
pyruvate fermentation to (S)-acetoin 3 3 1
pyruvate fermentation to (R)-acetoin I 3 2 1
L-valine biosynthesis 4 4 1
pyruvate fermentation to isobutanol (engineered) 5 4 1
superpathway of (R,R)-butanediol biosynthesis 5 2 1
superpathway of fucose and rhamnose degradation 12 11 2
L-isoleucine biosynthesis IV 6 4 1
superpathway of 2,3-butanediol biosynthesis 6 3 1
L-isoleucine biosynthesis I (from threonine) 7 7 1
L-isoleucine biosynthesis III 7 4 1
L-isoleucine biosynthesis II 8 4 1
superpathway of branched chain amino acid biosynthesis 17 17 2
photorespiration I 9 5 1
photorespiration III 9 5 1
photorespiration II 10 6 1
superpathway of L-isoleucine biosynthesis I 13 13 1
superpathway of L-threonine metabolism 18 16 1