Experiment set10S128 for Escherichia coli BL21

Compare to:

L-Arabinose

200 most important genes:

  gene name fitness t score description  
ECD_01101 -8.2 -4.2 OM lipoprotein stimulator of MrcB transpeptidase compare
ECD_00148 -7.7 -7.5 fused glycosyl transferase and transpeptidase compare
ECD_00003 -7.0 -9.1 homoserine kinase compare
ECD_04268 -6.1 -18.4 lytic murein transglycosylase, soluble conserved
ECD_00056 -6.0 -10.0 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent compare
ECD_00004 -5.6 -8.3 L-threonine synthase compare
ECD_00002 -5.5 -18.2 Bifunctional aspartokinase/homoserine dehydrogenase 1 compare
ECD_04264 -5.4 -7.2 3-phosphoserine phosphatase compare
ECD_01922 -5.3 -3.6 bifunctional histidinal dehydrogenase/ histidinol dehydrogenase compare
ECD_00333 -5.1 -9.5 pyrroline-5-carboxylate reductase, NAD(P)-binding compare
ECD_02245 -5.1 -7.0 erythronate-4-phosphate dehydrogenase compare
ECD_01926 -5.0 -3.9 N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase compare
ECD_03827 -4.8 -12.6 5,10-methylenetetrahydrofolate reductase compare
ECD_00073 -4.7 -4.7 3-isopropylmalate dehydratase small subunit compare
ECD_00961 -4.7 -9.4 outer membrane protein A (3a compare
ECD_00075 -4.7 -12.4 3-isopropylmalate dehydrogenase, NAD(+)-dependent compare
ECD_00385 -4.6 -6.2 putative lipoprotein compare
ECD_02443 -4.5 -6.9 serine hydroxymethyltransferase compare
ECD_00911 -4.4 -9.3 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
ECD_00074 -4.3 -10.5 3-isopropylmalate dehydratase large subunit compare
ECD_03649 -4.2 -15.5 dihydroxyacid dehydratase compare
ECD_02744 -4.2 -13.6 D-3-phosphoglycerate dehydrogenase compare
ECD_03708 -4.1 -19.2 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase compare
ECD_03652 -4.0 -19.2 ketol-acid reductoisomerase, NAD(P)-binding compare
ECD_t00077 -4.0 -1.7 tRNA-Thr compare
ECD_00240 -4.0 -9.9 gamma-glutamylphosphate reductase compare
ECD_01924 -4.0 -3.3 histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase compare
ECD_00384 -3.8 -14.1 muropeptide transporter compare
ECD_00053 -3.8 -4.9 diadenosine tetraphosphatase compare
ECD_01925 -3.7 -2.5 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
ECD_03825 -3.7 -11.5 cystathionine gamma-synthase, PLP-dependent compare
ECD_03242 -3.6 -2.6 shikimate kinase I compare
ECD_03648 -3.6 -14.4 branched-chain amino acid aminotransferase compare
ECD_03488 -3.6 -4.2 UDP-glucose:(heptosyl)lipopolysaccharide alpha-1,3-glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I compare
ECD_03238 -3.5 -5.1 D-ribulose-5-phosphate 3-epimerase compare
ECD_00063 -3.5 -8.3 L-ribulose-5-phosphate 4-epimerase conserved
ECD_03707 -3.4 -9.7 methionine biosynthesis regulon transcriptional regulator compare
ECD_00239 -3.2 -6.0 gamma-glutamate kinase compare
ECD_02765 -3.2 -5.6 transketolase 1, thiamine triphosphate-binding compare
ECD_03885 -3.2 -9.7 homoserine O-transsuccinylase compare
ECD_01167 -3.0 -2.4 murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A compare
ECD_03650 -2.9 -13.5 l-threonine dehydratase, biosynthetic; also known as threonine deaminase compare
ECD_01441 -2.9 -2.7 D,D-dipeptide ABC transporter ATPase compare
ECD_00076 -2.8 -9.1 2-isopropylmalate synthase compare
ECD_02686 -2.8 -15.8 diaminopimelate decarboxylase, PLP-binding compare
ECD_01923 -2.8 -5.0 histidinol-phosphate aminotransferase compare
ECD_01234 -2.6 -2.1 tryptophan synthase, alpha subunit compare
ECD_03067 -2.6 -2.6 RNA polymerase, sigma 54 (sigma N) factor compare
ECD_03845 -2.4 -10.1 argininosuccinate lyase compare
ECD_01235 -2.4 -5.5 tryptophan synthase, beta subunit compare
ECD_02254 -2.4 -3.0 chorismate synthase compare
ECD_00160 -2.3 -7.2 serine endoprotease (protease Do), membrane-associated compare
ECD_00109 -2.3 -9.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase compare
ECD_02238 -2.3 -2.4 colicin V production protein compare
ECD_03659 -2.3 -1.2 thioredoxin 1 compare
ECD_02726 -2.2 -4.3 site-specific tyrosine recombinase compare
ECD_02600 -2.2 -9.4 adenosine 5'-phosphosulfate kinase compare
ECD_01238 -2.2 -4.7 component I of anthranilate synthase compare
ECD_03755 -2.2 -7.6 glutamine synthetase compare
ECD_03651 -2.1 -11.5 transcriptional activator of ilvC; autorepressor compare
ECD_02272 -2.1 -5.6 ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component compare
ECD_02881 -2.1 -9.2 cystathionine beta-lyase, PLP-dependent compare
ECD_03843 -2.1 -12.5 N-acetyl-gamma-glutamylphosphate reductase, NAD(P)-binding compare
ECD_03844 -2.1 -7.6 acetylglutamate kinase compare
ECD_03687 -2.1 -2.4 site-specific tyrosine recombinase compare
ECD_01928 -2.0 -1.5 phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase compare
ECD_03897 -2.0 -5.8 glucosephosphate isomerase compare
ECD_00893 -2.0 -8.6 leucine-responsive global transcriptional regulator compare
ECD_01237 -1.9 -3.6 fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase compare
ECD_04086 -1.9 -4.9 3'(2'),5'-bisphosphate nucleotidase compare
ECD_03057 -1.9 -9.0 ABC transporter maintaining OM lipid asymmetry, periplasmic binding protein compare
ECD_01957 -1.9 -2.3 GDP-mannose mannosyl hydrolase compare
ECD_00500 -1.9 -2.1 DLP12 prophage; endonuclease RUS compare
ECD_00388 -1.9 -4.9 proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases compare
ECD_01793 -1.9 -5.5 stress protein, member of the CspA-family compare
ECD_02607 -1.8 -1.7 phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent compare
ECD_03038 -1.8 -9.9 argininosuccinate synthetase compare
ECD_04070 -1.8 -2.5 50S ribosomal subunit protein L9 compare
ECD_02687 -1.8 -7.3 transcriptional activator of lysA; autorepressor compare
ECD_03731 -1.7 -3.9 TatABCE protein translocation system subunit compare
ECD_01645 -1.7 -2.6 pyruvate kinase I compare
ECD_03058 -1.7 -7.6 OM lipid asymmetry maintenance protein; membrane-anchored ABC family periplasmic binding protein compare
ECD_02670 -1.7 -3.0 exonuclease V (RecBCD complex), gamma chain compare
ECD_03056 -1.6 -3.7 ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component compare
ECD_03089 -1.6 -5.9 stringent starvation protein A, phage P1 late gene activator, RNAP-associated acid-resistance protein, inactive glutathione S-transferase-like protein compare
ECD_03842 -1.6 -10.1 acetylornithine deacetylase compare
ECD_00703 -1.6 -5.0 quinolinate synthase, subunit A compare
ECD_03097 -1.6 -4.6 l-arginine-responsive arginine metabolism regulon transcriptional regulator compare
ECD_00492 -1.5 -1.3 hypothetical protein compare
ECD_04038 -1.5 -1.4 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase compare
ECD_00108 -1.5 -5.0 quinolinate phosphoribosyltransferase compare
ECD_02391 -1.5 -3.8 phosphoribosylaminoimidazole synthetase compare
ECD_03883 -1.5 -9.5 IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase compare
ECD_02666 -1.5 -9.6 amino acid N-acetyltransferase and inactive acetylglutamate kinase compare
ECD_t00011 -1.5 -2.1 tRNA-Gln compare
ECD_01103 -1.5 -2.2 beta N-acetyl-glucosaminidase compare
ECD_03646 -1.5 -9.7 acetolactate synthase II, valine insensitive, large subunit compare
ECD_04120 -1.5 -8.1 ornithine carbamoyltransferase 1 compare
ECD_02224 -1.4 -4.4 putative NUDIX hydrolase compare
ECD_03059 -1.4 -6.1 ABC transporter maintaining OM lipid asymmetry, inner membrane permease protein compare
ECD_03060 -1.4 -5.8 ABC transporter maintaining OM lipid asymmetry, ATP-binding protein compare
ECD_00708 -1.4 -4.6 phosphoglyceromutase 1 compare
ECD_00556 -1.4 -3.3 iron-enterobactin ABC transporter permease compare
ECD_00036 -1.4 -5.3 carbamoyl phosphate synthetase small subunit, glutamine amidotransferase compare
ECD_03555 -1.4 -8.0 acetolactate synthase 2 large subunit compare
ECD_02488 -1.3 -5.3 chorismate mutase and prephenate dehydratase, P-protein compare
ECD_03882 -1.3 -5.4 phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase compare
ECD_01058 -1.3 -1.9 dihydro-orotase compare
ECD_01226 -1.3 -2.0 membrane spanning protein in TonB-ExbB-ExbD transport complex compare
ECD_02097 -1.3 -4.2 fructose-1-phosphate kinase compare
ECD_00574 -1.3 -6.0 alkyl hydroperoxide reductase, C22 subunit compare
ECD_01258 -1.3 -2.3 orotidine-5'-phosphate decarboxylase compare
ECD_00960 -1.3 -2.1 Ter macrodomain organizer matS-binding protein compare
ECD_02449 -1.3 -9.2 phosphoribosylformyl-glycineamide synthetase compare
ECD_03797 -1.2 -3.0 sensory histidine kinase in two-component regulatory system with CpxR compare
ECD_02549 -1.2 -5.2 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor compare
ECD_00432 -1.2 -1.3 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase compare
ECD_00081 -1.2 -3.2 transcriptional repressor-activator for carbon metabolism compare
ECD_03530 -1.2 -1.3 hypothetical protein compare
ECD_01794 -1.2 -3.7 DUF2527 family heat-induced protein compare
ECD_00472 -1.2 -5.8 N5-carboxyaminoimidazole ribonucleotide synthase compare
ECD_02237 -1.2 -6.1 amidophosphoribosyltransferase compare
ECD_02393 -1.2 -3.9 polyphosphate kinase, component of RNA degradosome compare
ECD_02179 -1.2 -6.1 uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent compare
ECD_00037 -1.2 -7.0 carbamoyl-phosphate synthase large subunit compare
ECD_01828 -1.2 -2.6 zinc ABC transporter periplasmic binding protein compare
ECD_03017 -1.2 -1.4 outer membrane lipoprotein compare
ECD_00559 -1.1 -2.8 ferrienterobactin ABC transporter periplasmic binding protein compare
ECD_03499 -1.1 -5.5 orotate phosphoribosyltransferase compare
ECD_00032 -1.1 -1.6 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) compare
ECD_03647 -1.1 -3.1 acetolactate synthase 2 small subunit compare
ECD_01124 -1.1 -2.1 spermidine/putrescine ABC transporter ATPase compare
ECD_00329 -1.1 -1.3 anti-RssB factor, RpoS stabilzer during Pi starvation; anti-adapter protein compare
ECD_00912 -1.1 -2.5 5-enolpyruvylshikimate-3-phosphate synthetase compare
ECD_03735 -1.1 -4.0 NAD(P)H-flavin reductase compare
ECD_00335 -1.1 -3.2 shikimate kinase II compare
ECD_02973 -1.1 -1.2 DUF805 family inner membrane protein compare
ECD_04113 -1.1 -4.2 aspartate carbamoyltransferase, catalytic subunit compare
ECD_00020 -1.1 -1.6 hypothetical protein compare
ECD_02468 -1.1 -6.7 quinolinate synthase, L-aspartate oxidase (B protein) subunit conserved
ECD_00602 -1.1 -5.7 septal ring protein, suppressor of prc, minor lipoprotein compare
ECD_02181 -1.1 -6.9 fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase compare
ECD_02400 -1.1 -3.7 IMP dehydrogenase compare
ECD_t00019 -1.1 -1.1 tRNA-Lys compare
ECD_02507 -1.1 -1.2 toxic UPF0083 family protein inhibitor of 70S ribosome formation compare
ECD_01835 -1.0 -1.2 UPF0082 family protein compare
ECD_00551 -1.0 -4.0 enterobactin/ferrienterobactin esterase compare
ECD_03506 -1.0 -1.4 RNA polymerase, omega subunit compare
ECD_00389 -1.0 -4.2 ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease compare
ECD_03207 -1.0 -1.7 OsmC family protein compare
ECD_02951 -1.0 -1.1 antitoxinof the HigB-HigA toxin-antitoxin system compare
ECD_03456 -1.0 -2.5 mannitol operon repressor compare
ECD_00112 -1.0 -4.2 pyruvate dehydrogenase complex repressor; autorepressor compare
ECD_03096 -1.0 -2.5 malate dehydrogenase, NAD(P)-binding compare
ECD_00064 -1.0 -5.6 L-arabinose isomerase conserved
ECD_02250 -1.0 -1.0 uncharacterized protein compare
ECD_02314 -1.0 -4.2 cysteine synthase A, O-acetylserine sulfhydrolase A subunit compare
ECD_03841 -1.0 -6.5 phosphoenolpyruvate carboxylase compare
ECD_01886 -1.0 -2.7 membrane-anchored, periplasmic TMAO, DMSO reductase compare
ECD_00633 -0.9 -3.0 N-acetylglucosamine-inducible nag divergent operon transcriptional repressor compare
ECD_02880 -0.9 -5.9 membrane spanning protein in TonB-ExbB-ExbD complex compare
ECD_01435 -0.9 -2.0 putative DNA-binding transcriptional regulator compare
ECD_04185 -0.9 -1.7 periplasmic chaperone compare
ECD_02183 -0.9 -5.7 4-amino-4-deoxy-L-arabinose transferase compare
ECD_03240 -0.9 -5.9 cell division protein that binds to the septal ring compare
ECD_02130 -0.9 -1.5 nitrate reductase, small, cytochrome C550 subunit, periplasmic compare
ECD_t00083 -0.9 -0.9 tRNA-Leu compare
ECD_00204 -0.9 -6.3 putative membrane-bound lytic murein transglycosylase D compare
ECD_00417 -0.9 -2.3 DUF2496 family protein compare
ECD_00387 -0.9 -3.0 peptidyl-prolyl cis/trans isomerase (trigger factor) compare
ECD_03556 -0.9 -1.6 ilvB operon leader peptide compare
ECD_02027 -0.9 -1.2 ADP-ribosylglycohydrolase family protein compare
ECD_00681 -0.9 -1.3 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_00702 -0.9 -3.2 periplasmic TolA-binding protein compare
ECD_02465 -0.9 -3.9 anti-sigma E factor, binds RseA compare
ECD_03241 -0.9 -2.8 3-dehydroquinate synthase compare
ECD_03106 -0.9 -2.7 ribonuclease G compare
ECD_02628 -0.9 -1.4 antitoxin of the ChpA-ChpR toxin-antitoxin system compare
ECD_01060 -0.9 -3.6 glutaredoxin 2 (Grx2) compare
ECD_01695 -0.8 -1.0 putative inner membrane protein compare
ECD_01300 -0.8 -1.9 aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase compare
ECD_02769 -0.8 -2.9 uncharacterized protein compare
ECD_02104 -0.8 -1.5 lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase compare
ECD_00835 -0.8 -1.8 hypothetical protein compare
ECD_01195 -0.8 -1.0 cation transport regulator compare
ECD_01946 -0.8 -1.3 dTDP-L-rhamnose synthase, NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit compare
ECD_00165 -0.8 -2.6 uridylyltransferase compare
ECD_00423 -0.8 -2.9 gap repair protein compare
ECD_04111 -0.8 -2.8 enamine/imine deaminase, reaction intermediate detoxification compare
ECD_00473 -0.8 -2.8 N5-carboxyaminoimidazole ribonucleotide mutase compare
ECD_00946 -0.8 -1.8 putative fimbriae protein compare
ECD_02301 -0.8 -3.1 manganese/divalent cation transporter compare
ECD_03746 -0.8 -3.5 periplasmic protein disulfide isomerase I compare
ECD_00008 -0.8 -4.6 transaldolase B compare
ECD_03801 -0.8 -3.8 6-phosphofructokinase I compare
ECD_00684 -0.8 -2.1 succinate dehydrogenase, FeS subunit compare
ECD_01611 -0.8 -3.8 outer membrane lipoprotein compare
ECD_01805 -0.8 -3.8 MCE domain protein compare
ECD_02180 -0.8 -4.2 undecaprenyl phosphate-L-Ara4FN transferase compare
ECD_04245 -0.8 -2.9 uncharacterized protein compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source L-Arabinose in Escherichia coli BL21

For carbon source L-Arabinose across organisms