Experiment set10S128 for Escherichia coli BL21
L-Arabinose
Group: carbon sourceMedia: M9_plus_L-Arabinose + L-Arabinose (20 mM)
Culturing: BL21_ML4, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 12/16/2024
Specific Phenotypes
For 10 genes in this experiment
For carbon source L-Arabinose in Escherichia coli BL21
For carbon source L-Arabinose across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| NAD and NADP cofactor biosynthesis global | 3 |
| NAD regulation | 3 |
| Peptidoglycan Biosynthesis | 2 |
| L-Arabinose utilization | 1 |
| L-ascorbate utilization (and related gene clusters) | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Ascorbate and aldarate metabolism
- Nicotinate and nicotinamide metabolism
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
- Pentose and glucuronate interconversions
- Ubiquinone and menaquinone biosynthesis
- Alanine and aspartate metabolism
- Nucleotide sugars metabolism
- Glycosaminoglycan degradation
- Peptidoglycan biosynthesis
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| NAD de novo biosynthesis I | 6 | 5 | 3 |
| NAD de novo biosynthesis IV (anaerobic) | 6 | 5 | 3 |
| NAD de novo biosynthesis III | 6 | 4 | 2 |
| nicotine biosynthesis | 9 | 3 | 3 |
| L-arabinose degradation I | 4 | 4 | 1 |
| L-lyxose degradation | 4 | 4 | 1 |
| NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde | 4 | 3 | 1 |
| superpathway of nicotine biosynthesis | 12 | 4 | 3 |
| L-ascorbate degradation I (bacterial, anaerobic) | 5 | 5 | 1 |
| peptidoglycan maturation (meso-diaminopimelate containing) | 12 | 6 | 2 |
| L-ascorbate degradation II (bacterial, aerobic) | 7 | 7 | 1 |
| aspartate superpathway | 25 | 24 | 3 |
| NAD de novo biosynthesis II (from tryptophan) | 9 | 3 | 1 |
| peptidoglycan recycling II | 10 | 7 | 1 |
| peptidoglycan recycling I | 14 | 14 | 1 |
| superpathway of NAD biosynthesis in eukaryotes | 14 | 7 | 1 |
| peptidoglycan biosynthesis IV (Enterococcus faecium) | 17 | 12 | 1 |
| peptidoglycan biosynthesis II (staphylococci) | 17 | 12 | 1 |
| superpathway of pentose and pentitol degradation | 42 | 15 | 1 |