Experiment set10IT096 for Agrobacterium fabrum C58

Compare to:

Ferulic Acid carbon source

200 most important genes:

  gene name fitness t score description  
Atu0400 -6.9 -4.8 orotate phosphoribosyltransferase compare
Atu2684 -6.3 -4.3 hypothetical protein compare
Atu0038 -5.9 -7.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0030 -5.8 -2.7 phosphocarrier protein HPr compare
Atu1688 -5.8 -5.7 indole-3-glycerol-phosphate synthase compare
Atu1687 -5.8 -10.9 anthranilate phosphoribosyltransferase compare
Atu2040 -5.7 -5.6 phosphoserine phosphatase compare
Atu2791 -5.6 -9.4 3-isopropylmalate dehydrogenase compare
Atu0099 -5.6 -13.7 prephenate dehydratase compare
Atu3740 -5.3 -12.4 fructose bisphosphate aldolase compare
Atu1205 -5.3 -15.0 threonine dehydratase compare
Atu3706 -5.2 -10.6 D-3-phosphoglycerate dehydrogenase compare
Atu2709 -5.2 -19.7 3-isopropylmalate dehydratase, large subunit compare
Atu1307 -5.2 -8.8 dihydroorotase compare
Atu1588 -5.2 -9.3 homoserine dehydrogenase compare
Atu2650 -5.2 -14.9 glycerol-3-phosphate dehydrogenase compare
Atu0679 -5.1 -8.5 ATP phosphoribosyltransferase compare
Atu1845 -5.1 -5.9 phosphoribosylformylglycinamidine synthase I compare
Atu2289 -5.1 -19.2 anthranilate synthase component I and II compare
Atu0041 -5.0 -3.4 glutamine amidotransferase compare
Atu1417 -5.0 -10.6 enoyl-CoA hydratase compare
Atu1620 -4.9 -13.8 triosephosphate isomerase compare
Atu1030 -4.9 -3.3 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0298 -4.9 -9.7 orotidine 5 compare
Atu1308 -4.9 -7.5 aspartate carbamoyl transferase catalytic subunit compare
Atu2264 -4.8 -15.2 2-isopropylmalate synthase compare
Atu2790 -4.8 -2.9 3-isopropylmalate dehydratase, small subunit compare
Atu3754 -4.8 -8.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0399 -4.8 -8.6 dihydroorotase compare
Atu0537 -4.7 -8.5 histidinol dehydrogenase compare
Atu0039 -4.7 -3.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu0017 -4.7 -4.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0678 -4.6 -8.2 histidyl-tRNA synthetase compare
Atu1750 -4.6 -8.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu1075 -4.5 -10.0 amidophosphoribosyltransferase compare
Atu2718 -4.5 -10.4 homoserine O-succinyltransferase compare
Atu3739 -4.5 -4.1 phosphoglycerate kinase compare
Atu1140 -4.4 -5.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1844 -4.4 -4.1 Phosphoribosylformylglycinamidine synthetase compare
Atu0803 -4.4 -19.7 pyruvate,orthophosphate dikinase compare
Atu2036 -4.4 -16.6 acetolactate synthase III, large subunit compare
Atu3707 -4.3 -4.9 phosphoserine aminotransferase compare
Atu0432 -4.2 -12.4 O-succinylhomoserine sulfhydrylase compare
Atu0035 -4.2 -14.7 phosphoenolpyruvate carboxykinase compare
Atu1850 -4.1 -4.5 phosphoribosylformylglycinamidine synthetase II compare
Atu0486 -4.1 -6.6 dihydroorotate dehydrogenase compare
Atu4217 -4.1 -2.8 TetR family transcriptional regulator compare
Atu0647 -4.1 -9.0 phosphoribosylamine--glycine ligase compare
Atu0043 -4.0 -3.9 imidazoleglycerol-phosphate dehydratase compare
Atu1141 -4.0 -6.9 Phosphoribosylglycinamide synthetase compare
Atu0536 -3.9 -9.4 hypothetical protein compare
Atu0501 -3.7 -17.2 acyl-CoA dehydrogenase compare
Atu3755 -3.6 -6.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0502 -3.5 -9.4 acetyl-CoA acetyltransferase compare
Atu3885 -3.4 -10.2 inositol monophosphatase compare
Atu4505 -3.4 -8.3 LacI family transcriptional regulator compare
Atu0503 -3.4 -12.5 enoyl-CoA hydratase compare
Atu3469 -3.3 -3.9 phosphoglyceromutase compare
Atu0608 -3.3 -15.1 transcriptional regulator compare
Atu4541 -3.3 -7.6 carboxymuconolactone decarboxylase compare
Atu3763 -3.3 -2.2 hypothetical protein compare
Atu0040 -3.2 -2.0 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2155 -3.2 -19.1 methionine synthase compare
Atu0047 -3.1 -16.8 malate synthase G compare
Atu0607 -3.1 -15.4 isocitrate lyase compare
Atu2115 -3.0 -13.2 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu4538 -3.0 -12.5 3-carboxy-cis,cis-muconate cycloisomerase compare
Atu3731 -2.8 -12.0 5-formyltetrahydrofolate cyclo-ligase compare
Atu4346 -2.8 -7.1 hypothetical protein compare
Atu1354 -2.8 -1.5 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2015 -2.5 -14.1 aminotransferase compare
Atu4685 -2.5 -7.5 LacI family transcriptional regulator compare
Atu6098 -2.5 -1.9 transcriptional regulator, HTH family compare
Atu0062 -2.5 -14.2 transcriptional regulator, ROK family compare
Atu2464 -2.5 -4.0 formyltetrahydrofolate deformylase compare
Atu3783 -2.4 -14.1 glutamate synthase subunit beta compare
Atu0606 -2.2 -4.1 hypothetical protein compare
Atu4549 -2.2 -11.7 beta-ketoadipyl CoA thiolase conserved
Atu4773 -2.2 -1.7 two component response regulator compare
Atu2225 -2.1 -8.3 transcriptional regulator compare
Atu2745 -2.1 -14.1 acetyl-coenzyme A synthetase compare
Atu3784 -2.0 -16.0 glutamate synthase large subunit compare
Atu1419 -2.0 -6.5 transcriptional regulator, GntR family compare
Atu4674 -2.0 -11.1 GntR family transcriptional regulator compare
Atu4542 -2.0 -8.5 beta-ketoadipate enol-lactone hydrolase conserved
Atu1589 -1.9 -5.8 aminotransferase, class I compare
Atu4616 -1.8 -2.7 dTDP-4-dehydrorhamnose reductase compare
Atu0837 -1.8 -7.0 transcriptional regulator, MarR family compare
Atu1904 -1.8 -3.4 transcriptional regulator compare
Atu2207 -1.8 -3.1 two component sensor kinase compare
Atu4547 -1.7 -10.6 3-oxoadipate CoA-transferase subunit A compare
Atu4548 -1.7 -7.7 3-oxoadipate CoA-transferase subunit B conserved
Atu1457 -1.7 -3.4 hypothetical protein compare
Atu1359 -1.7 -1.6 dnaK deletion suppressor protein compare
Atu5125 -1.7 -5.6 GntR family transcriptional regulator compare
Atu1418 -1.7 -5.8 methylenetetrahydrofolate reductase compare
Atu3483 -1.6 -6.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0876 -1.5 -2.4 superoxide dismutase compare
Atu0434 -1.5 -2.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4711 -1.5 -6.2 two component sensor kinase compare
Atu1028 -1.5 -2.9 hypothetical protein compare
Atu1456 -1.5 -7.8 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu4096 -1.5 -6.6 nicotinate-nucleotide pyrophosphorylase compare
Atu1748 -1.4 -9.0 NIFU-like protein compare
Atu0770 -1.4 -6.0 cytochrome C oxidase assembly protein compare
Atu0101 -1.4 -5.6 cytochrome c compare
Atu0086 -1.4 -1.0 ribosome-binding factor A compare
Atu4098 -1.4 -9.5 quinolinate synthetase compare
Atu2267 -1.4 -5.8 hypothetical protein compare
Atu0029 -1.4 -4.6 S-adenosylhomocysteine hydrolase compare
Atu0771 -1.4 -6.8 cytochrome c oxidase subunit III compare
Atu2237 -1.4 -5.0 cytochrome c1 compare
Atu3466 -1.4 -3.7 ArsR family transcriptional regulator compare
Atu1420 -1.3 -8.1 glycine cleavage system T protein, aminomethyltransferase compare
Atu3337 -1.3 -7.2 LacI family transcriptional regulator compare
Atu3482 -1.3 -7.0 pantoate--beta-alanine ligase compare
Atu2238 -1.3 -5.7 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0768 -1.3 -8.0 cytochrome-c oxidase chain I compare
Atu4576 -1.3 -7.8 ROK family transcriptional regulator compare
Atu0354 -1.3 -2.3 ferric uptake regulator compare
Atu3963 -1.3 -7.1 GntR family transcriptional regulator compare
Atu0188 -1.3 -3.3 ABC transporter, membrane spanning protein (peptide) compare
Atu1454 -1.3 -6.1 siroheme synthase compare
Atu3486 -1.2 -2.6 DeoR family transcriptional regulator compare
Atu1686 -1.2 -8.4 peptidyl-prolyl cis-trans isomerse D compare
Atu2224 -1.2 -6.4 aldehyde dehydrogenase compare
Atu2640 -1.2 -3.8 hypothetical protein compare
Atu2800 -1.2 -1.9 precorrin-3B C17-methyltransferase compare
Atu1464 -1.2 -4.7 glycine cleavage system T protein, aminomethyltransferase compare
Atu0981 -1.2 -7.0 glutamate-ammonia-ligase adenylyltransferase compare
Atu0590 -1.2 -6.8 transcriptional regulator repressor compare
Atu0300 -1.2 -4.9 methyltransferase compare
Atu4539 -1.2 -7.6 protocatechuate 3,4-dioxygenase alpha chain conserved
Atu5115 -1.1 -2.0 hypothetical protein compare
Atu1421 -1.1 -4.8 hypothetical protein compare
Atu2821 -1.1 -5.5 transcriptional regulator, GntR family compare
Atu2125 -1.1 -1.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu1546 -1.1 -4.7 transcriptional regulator, MerR family compare
Atu0405 -1.1 -8.7 long-chain-fatty-acid-CoA-ligase compare
Atu0331 -1.1 -2.6 sigma-54 modulation protein compare
Atu6114 -1.1 -2.1 hypothetical protein compare
Atu2205 -1.1 -4.4 transcriptional regulator, MarR family compare
Atu3579 -1.1 -3.0 lactoylglutathione lyase compare
Atu0977 -1.1 -2.9 serine protease DO-like protease compare
Atu1242 -1.1 -7.0 cytochrome oxidase assembly factor compare
Atu1455 -1.1 -3.7 hypothetical protein compare
Atu0807 -1.1 -4.8 metallo-beta-lactamase superfamily protein compare
Atu4514 -1.1 -3.0 RpiR family transcriptional regulator compare
Atu2746 -1.1 -1.9 hypothetical protein compare
Atu3908 -1.1 -6.2 GntR family transcriptional regulator compare
Atu1074 -1.0 -6.4 NAD/NADP dependent oxidoreductase compare
Atu0723 -1.0 -1.7 FAD dependent oxidoreductase compare
Atu0767 -1.0 -3.9 cytochrome c oxidase subunit II compare
Atu1739 -1.0 -3.9 permease compare
Atu1422 -1.0 -3.5 transcriptional regulator, MarR family compare
Atu5142 -1.0 -2.6 hypothetical protein compare
Atu4161 -1.0 -2.4 hypothetical protein compare
Atu1714 -1.0 -1.7 exonuclease III compare
Atu4072 -1.0 -2.1 nodulation protein N compare
Atu8087 -1.0 -1.3 putative peptidoglycan binding protein compare
Atu0190 -1.0 -4.3 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0346 -1.0 -2.0 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4364 -1.0 -4.8 LacI family transcriptional regulator compare
Atu2747 -1.0 -5.5 hypothetical protein compare
Atu4232 -1.0 -4.9 GntR family transcriptional regulator compare
Atu2439 -1.0 -1.5 hypothetical protein compare
Atu5464 -0.9 -6.2 IclR family transcriptional regulator compare
Atu1774 -0.9 -5.4 ABC transporter, substrate binding protein (peptide) compare
Atu4599 -0.9 -5.1 IclR family transcriptional regulator compare
Atu1286 -0.9 -3.2 hypothetical protein compare
Atu5075 -0.9 -4.5 GntR family transcriptional regulator compare
Atu3476 -0.9 -3.8 AsnC family transcriptional regulator compare
Atu2832 -0.9 -3.2 tRNA modification GTPase compare
Atu2606 -0.9 -4.1 transcriptional regulator, GntR family compare
Atu3485 -0.9 -5.3 short chain dehydrogenase compare
Atu2633 -0.9 -2.6 RhtB family transporter compare
Atu1258 -0.9 -3.9 ATP-dependent Clp protease, proteolytic subunit compare
Atu0895 -0.9 -2.1 ABC transporter, substrate binding protein compare
Atu2239 -0.9 -2.6 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu4540 -0.9 -1.6 protocatechuate 3,4-dioxygenase subunit beta compare
Atu0422 -0.9 -2.0 ABC transporter, membrane spanning protein compare
Atu1462 -0.9 -5.4 glycine cleavage system protein P2 compare
Atu3162 -0.9 -5.0 LacI family transcriptional regulator compare
Atu1570 -0.8 -0.9 hypothetical protein compare
Atu0401 -0.8 -4.1 fructokinase compare
Atu2376 -0.8 -0.7 hypothetical protein compare
Atu2193 -0.8 -1.0 hypothetical protein compare
Atu2831 -0.8 -3.0 glucose inhibited division protein A compare
Atu8115 -0.8 -5.7 Hypothetical Protein compare
Atu4896 -0.8 -1.3 acetyltransferase compare
Atu4702 -0.8 -4.0 GntR family transcriptional regulator compare
Atu1163 -0.8 -1.8 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2805 -0.8 -3.4 cobalamin synthesis protein compare
Atu5007 -0.8 -4.0 santhopine-responsive transcriptional repressor compare
Atu5451 -0.8 -1.6 hypothetical protein compare
Atu0361 -0.8 -1.5 transcriptional regulator compare
Atu0025 -0.8 -1.5 hypothetical protein compare
Atu1415 -0.8 -3.3 3-hydroxyacyl-CoA dehydrogenase type II compare
Atu0941 -0.8 -0.9 hypothetical protein compare
Atu4502 -0.8 -3.6 cobalamin synthesis protein compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source Ferulic Acid in Agrobacterium fabrum C58

For carbon source Ferulic Acid across organisms