| | gene | name | fitness | t score | description | |
|---|
| b3405 | ompR | +7.9 | 26.3 | osmolarity response regulator (NCBI) | compare |
| b0929 | ompF | +6.9 | 30.5 | outer membrane porin 1a (Ia;b;F) (NCBI) | compare |
| b0464 | acrR | +4.2 | 29.3 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1530 | marR | +3.3 | 5.5 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b0178 | hlpA | +2.7 | 5.5 | periplasmic chaperone (NCBI) | compare |
| b2572 | rseA | +2.7 | 7.0 | anti-sigma factor (NCBI) | compare |
| b1185 | dsbB | +2.4 | 5.2 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b3860 | dsbA | +2.2 | 14.7 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b2617 | smpA | +1.7 | 4.0 | small membrane protein A (VIMSS) | compare |
| b1151 | ymfO | +1.7 | 4.2 | e14 prophage; conserved protein (RefSeq) | compare |
| b2512 | yfgL | +1.7 | 8.1 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b1865 | nudB | +1.6 | 2.6 | dATP pyrophosphohydrolase (NCBI) | compare |
| b3162 | deaD | +1.6 | 6.9 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b1236 | galU | +1.5 | 6.2 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b4699 | fnrS | +1.5 | 1.9 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b3673 | emrD | +1.5 | 10.9 | 2-module integral membrane pump; multidrug resistance (VIMSS) | compare |
| b3751 | rbsB | +1.5 | 4.7 | D-ribose transporter subunit (NCBI) | compare |
| b4692 | oweE | +1.5 | 2.4 | no description | compare |
| b2571 | rseB | +1.4 | 7.6 | periplasmic negative regulator of sigmaE (NCBI) | compare |
| b4041 | plsB | +1.4 | 4.2 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b1048 | mdoG | +1.4 | 7.9 | glucan biosynthesis protein, periplasmic (NCBI) | compare |
| b3181 | greA | +1.4 | 5.8 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1147 | ymfL | +1.4 | 3.2 | e14 prophage; predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b0437 | clpP | +1.4 | 5.8 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b1150 | ymfR | +1.4 | 2.0 | e14 prophage; predicted protein (NCBI) | compare |
| b1049 | mdoH | +1.4 | 9.2 | glucosyltransferase MdoH (NCBI) | compare |
| b1349 | recT | +1.4 | 5.1 | Rac prophage; recombination and repair protein (NCBI) | compare |
| b1187 | fadR | +1.4 | 3.0 | fatty acid metabolism regulator (NCBI) | compare |
| b0059 | hepA | +1.4 | 11.2 | ATP-dependent helicase HepA (NCBI) | compare |
| b0232 | yafN | +1.3 | 1.4 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b1855 | lpxM | +1.3 | 5.8 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b4693 | aaaE | +1.3 | 5.8 | no description | compare |
| b0889 | lrp | +1.3 | 3.5 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b0928 | aspC | +1.3 | 3.1 | aspartate aminotransferase, PLP-dependent (NCBI) | compare |
| b1850 | eda | +1.3 | 3.7 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b3706 | trmE | +1.3 | 4.6 | tRNA modification GTPase (NCBI) | compare |
| b3741 | gidA | +1.2 | 5.8 | glucose-inhibited division protein A (NCBI) | compare |
| b1613 | manA | +1.2 | 2.7 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b1157 | stfE | +1.2 | 7.5 | no description | compare |
| b3026 | qseC | +1.2 | 4.0 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b1921 | fliZ | +1.2 | 3.4 | orf, hypothetical protein (VIMSS) | compare |
| b1153 | ymfQ | +1.1 | 3.7 | e14 prophage; conserved protein (NCBI) | compare |
| b1154 | ycfK | +1.1 | 5.7 | e14 prophage; predicted protein (NCBI) | compare |
| b2912 | ygfA | +1.1 | 3.4 | putative ligase (VIMSS) | compare |
| b4397 | creA | +1.1 | 1.4 | hypothetical protein (NCBI) | compare |
| b1111 | ycfQ | +1.1 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b1152 | ymfP | +1.1 | 4.7 | orf, hypothetical protein (VIMSS) | compare |
| b4685 | yrbN | +1.1 | 2.6 | expressed protein (RefSeq) | compare |
| b0065 | yabI | +1.1 | 5.4 | conserved inner membrane protein (NCBI) | compare |
| b3204 | ptsN | +1.0 | 2.7 | sugar-specific enzyme IIA component of PTS (NCBI) | compare |
| b1138 | ymfE | +1.0 | 2.1 | e14 prophage; predicted inner membrane protein (NCBI) | compare |
| b3658 | selC | +1.0 | 3.6 | tRNA-Sec (NCBI) | compare |
| b1291 | sapD | +1.0 | 2.1 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b2051 | wcaH | +1.0 | 2.2 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b2061 | wzb | +1.0 | 2.5 | protein-tyrosine phosphatase (NCBI) | compare |
| b4545 | ypdJ | +1.0 | 1.6 | no description | compare |
| b2419 | yfeK | +1.0 | 2.7 | hypothetical protein (NCBI) | compare |
| b1158 | pin | +1.0 | 5.5 | e14 prophage; site-specific DNA recombinase (NCBI) | compare |
| b4158 | yjeO | +1.0 | 2.6 | conserved inner membrane protein (NCBI) | compare |
| b1811 | yoaH | +1.0 | 3.5 | hypothetical protein (NCBI) | compare |
| b1630 | rsxD | +1.0 | 4.6 | electron transport complex protein RnfD (NCBI) | compare |
| b1144 | ymfJ | +1.0 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2951 | yggS | +1.0 | 4.2 | predicted enzyme (NCBI) | compare |
| b3791 | rffA | +0.9 | 5.2 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b1155 | ymfS | +0.9 | 4.2 | e14 prophage; predicted protein (NCBI) | compare |
| b3749 | rbsA | +0.9 | 5.7 | fused D-ribose transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b0438 | clpX | +0.9 | 3.7 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b2289 | lrhA | +0.9 | 5.8 | DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes (NCBI) | compare |
| b2939 | yqgB | +0.9 | 2.0 | predicted protein (RefSeq) | compare |
| b2175 | spr | +0.9 | 3.9 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b1594 | dgsA | +0.9 | 3.1 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4011 | yjaA | +0.9 | 3.5 | hypothetical protein (NCBI) | compare |
| b2501 | ppk | +0.9 | 6.1 | polyphosphate kinase (NCBI) | compare |
| b2570 | rseC | +0.9 | 4.1 | RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) | compare |
| b4570 | lomR | +0.9 | 2.2 | no description | compare |
| b1627 | rsxA | +0.9 | 3.3 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b0191 | yaeJ | +0.9 | 4.1 | hypothetical protein (NCBI) | compare |
| b3229 | sspA | +0.9 | 2.4 | stringent starvation protein A (NCBI) | compare |
| b2904 | gcvH | +0.9 | 2.8 | glycine cleavage system protein H (NCBI) | compare |
| b1842 | holE | +0.9 | 1.3 | DNA polymerase III, theta subunit (NCBI) | compare |
| b1284 | yciT | +0.9 | 3.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1582 | ynfA | +0.9 | 1.5 | hypothetical protein (NCBI) | compare |
| b3630 | rfaP | +0.8 | 6.4 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b3194 | yrbE | +0.8 | 5.4 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b3649 | rpoZ | +0.8 | 2.2 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b1438 | ydcQ | +0.8 | 3.2 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b3790 | rffC | +0.8 | 3.2 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b0418 | pgpA | +0.8 | 4.0 | phosphatidylglycerophosphatase A (NCBI) | compare |
| b1949 | fliQ | +0.8 | 1.5 | flagellar biosynthesis protein Q (NCBI) | compare |
| b3205 | yhbJ | +0.8 | 3.0 | hypothetical protein (NCBI) | compare |
| b2058 | wcaB | +0.8 | 1.1 | predicted acyl transferase (NCBI) | compare |
| b2947 | gshB | +0.8 | 2.2 | glutathione synthetase (NCBI) | compare |
| b3750 | rbsC | +0.8 | 3.9 | ribose ABC transporter permease protein (NCBI) | compare |
| b3842 | rfaH | +0.8 | 4.3 | transcriptional activator RfaH (NCBI) | compare |
| b1480 | sra | +0.8 | 1.0 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b1524 | yneH | +0.8 | 0.9 | predicted glutaminase (NCBI) | compare |
| b3631 | rfaG | +0.8 | 6.4 | glucosyltransferase I (NCBI) | compare |
| b1618 | uidR | +0.8 | 2.2 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4241 | treR | +0.8 | 6.1 | trehalose repressor (NCBI) | compare |
| b4063 | soxR | +0.8 | 2.3 | DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing (NCBI) | compare |
| b1632 | rsxE | +0.8 | 4.9 | NADH-ubiquinone oxidoreductase (NCBI) | compare |
| b4651 | yibW | +0.7 | 0.4 | no description | compare |
| b0739 | tolA | +0.7 | 2.3 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b4363 | yjjB | +0.7 | 2.7 | conserved inner membrane protein (RefSeq) | compare |
| b3632 | rfaQ | +0.7 | 6.4 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b3620 | rfaF | +0.7 | 3.1 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b2749 | ygbE | +0.7 | 3.6 | conserved inner membrane protein (NCBI) | compare |
| b2214 | yojL | +0.7 | 3.4 | predicted thiamine biosynthesis lipoprotein (NCBI) | compare |
| b1778 | yeaA | +0.7 | 2.0 | methionine sulfoxide reductase B (NCBI) | compare |
| b1573 | ydfC | +0.7 | 1.1 | Qin prophage; predicted protein (RefSeq) | compare |
| b2096 | gatY | +0.7 | 3.4 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b1350 | recE | +0.7 | 3.7 | Rac prophage; exonuclease VIII, 5' -> 3' specific dsDNA exonuclease (NCBI) | compare |
| b4508 | peaD | +0.7 | 2.6 | putative sensory transduction regulator (VIMSS) | compare |
| b2024 | hisA | +0.7 | 2.1 | N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'- phosphoribosyl)-4-imidazolecarboxamide isomerase (VIMSS) | compare |
| b4451 | ryhB | +0.7 | 1.1 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b2259 | pmrD | +0.7 | 0.8 | polymyxin resistance protein B (VIMSS) | compare |
| b1992 | cobS | +0.7 | 1.3 | cobalamin synthase (NCBI) | compare |
| b3193 | yrbD | +0.7 | 4.2 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b2569 | lepA | +0.6 | 2.1 | GTP-binding protein LepA (NCBI) | compare |
| b2792 | yqcC | +0.6 | 1.3 | hypothetical protein (NCBI) | compare |
| b1766 | sppA | +0.6 | 4.0 | protease IV (signal peptide peptidase) (NCBI) | compare |
| b1434 | ydcN | +0.6 | 1.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4589 | ylcI | +0.6 | 1.5 | hypothetical protein (RefSeq) | compare |
| b1608 | rstA | +0.6 | 2.6 | DNA-binding response regulator in two-component regulatory system with RstB (RefSeq) | compare |
| b4481 | rffT | +0.6 | 3.3 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b1593 | b1593 | +0.6 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1139 | lit | +0.6 | 2.6 | e14 prophage; cell death peptidase, inhibitor of T4 late gene expression (NCBI) | compare |
| b1160 | elbA | +0.6 | 0.6 | hypothetical protein (NCBI) | compare |
| b3916 | pfkA | +0.6 | 1.7 | 6-phosphofructokinase (NCBI) | compare |
| b2708 | gutQ | +0.6 | 2.8 | orf, hypothetical protein (VIMSS) | compare |
| b1134 | ymfB | +0.6 | 1.0 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b1557 | cspB | +0.6 | 1.3 | Qin prophage; cold shock protein (NCBI) | compare |
| b1960 | vsr | +0.6 | 2.2 | DNA mismatch endonuclease of very short patch repair (NCBI) | compare |
| b0798 | ybiA | +0.6 | 0.9 | hypothetical protein (NCBI) | compare |
| b3190 | yrbA | +0.6 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b3977 | tyrU | +0.6 | 0.6 | tRNA-Tyr (NCBI) | compare |
| b1867 | yecD | +0.6 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b3146 | yraL | +0.6 | 3.1 | predicted methyltransferase (NCBI) | compare |
| b0904 | focA | +0.6 | 2.0 | formate transporter (NCBI) | compare |
| b1739 | osmE | +0.6 | 1.5 | DNA-binding transcriptional activator (NCBI) | compare |
| b0122 | yacC | +0.6 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b3725 | pstB | +0.6 | 0.6 | phosphate transporter subunit (NCBI) | compare |
| b0220 | ivy | +0.6 | 2.2 | inhibitor of vertebrate C-lysozyme (NCBI) | compare |
| b2142 | yohK | +0.6 | 3.1 | predicted inner membrane protein (NCBI) | compare |
| b4416 | rybA | +0.6 | 1.0 | unknown RNA (NCBI) | compare |
| b3484 | yhhI | +0.6 | 1.3 | predicted transposase (NCBI) | compare |
| b4460 | araH | +0.6 | 1.3 | fused L-arabinose transporter subunits of ABC superfamily: membrane components (RefSeq) | compare |
| b0759 | galE | +0.6 | 2.6 | UDP-galactose-4-epimerase (VIMSS) | compare |
| b1266 | yciV | +0.6 | 1.8 | hypothetical protein (NCBI) | compare |
| b1831 | proQ | +0.6 | 1.8 | putative solute/DNA competence effector (NCBI) | compare |
| b2092 | gatC | +0.6 | 2.4 | galactitol-specific enzyme IIC component of PTS (NCBI) | compare |
| b3619 | rfaD | +0.5 | 1.9 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b2083 | yegZ | +0.5 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b0010 | yaaH | +0.5 | 1.9 | conserved inner membrane protein associated with acetate transport (NCBI) | compare |
| b2093 | gatB | +0.5 | 1.7 | galactitol-specific enzyme IIB component of PTS (NCBI) | compare |
| b1684 | sufA | +0.5 | 1.0 | iron-sulfur cluster assembly scaffold protein (NCBI) | compare |
| b1325 | ycjG | +0.5 | 2.2 | putative muconate cycloisomerase I (EC 5.5.-.-) (VIMSS) | compare |
| b2195 | ccmG | +0.5 | 1.7 | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | compare |
| b0247 | ykfG | +0.5 | 0.8 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b4596 | yciZ | +0.5 | 0.9 | hypothetical protein (RefSeq) | compare |
| b1281 | pyrF | +0.5 | 1.4 | orotidine 5'-phosphate decarboxylase (NCBI) | compare |
| b2044 | wcaL | +0.5 | 2.4 | predicted glycosyl transferase (NCBI) | compare |
| b1034 | ycdX | +0.5 | 2.4 | hypothetical protein (NCBI) | compare |
| b2229 | b2229 | +0.5 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b0249 | ykfF | +0.5 | 1.0 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b4679 | yohP | +0.5 | 1.5 | expressed protein (RefSeq) | compare |
| b2741 | rpoS | +0.5 | 2.4 | RNA polymerase sigma factor (NCBI) | compare |
| b0979 | appB | +0.5 | 1.9 | cytochrome bd-II oxidase, subunit II (NCBI) | compare |
| b1305 | pspB | +0.5 | 1.5 | phage shock protein B (NCBI) | compare |
| b2317 | dedA | +0.5 | 1.6 | conserved inner membrane protein (NCBI) | compare |
| b1469 | narU | +0.5 | 2.1 | nitrate/nitrite transporter (NCBI) | compare |
| b0862 | artQ | +0.5 | 1.7 | arginine transporter subunit (NCBI) | compare |
| b4613 | dinQ | +0.5 | 1.2 | Damage inducible, function unknown (RefSeq) | compare |
| b4438 | cyaR | +0.5 | 1.0 | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq) | compare |
| b1511 | ydeV | +0.5 | 1.9 | putative kinase (VIMSS) | compare |
| b1954 | dsrA | +0.5 | 0.7 | regulatory antisense RNA (NCBI) | compare |
| b2209 | eco | +0.5 | 1.0 | ecotin precursor (NCBI) | compare |
| b1507 | hipA | +0.5 | 2.1 | regulator with hipB (NCBI) | compare |
| b0849 | grxA | +0.5 | 0.8 | glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a) (NCBI) | compare |
| b2063 | yegH | +0.5 | 2.5 | putative transport protein (VIMSS) | compare |
| b1558 | cspF | +0.5 | 1.1 | Qin prophage; cold shock protein (NCBI) | compare |
| b1336 | ydaH | +0.5 | 2.0 | putative pump protein (transport) (VIMSS) | compare |
| b0632 | dacA | +0.5 | 2.6 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b1467 | narY | +0.5 | 2.4 | nitrate reductase 2 (NRZ), beta subunit (NCBI) | compare |
| b4453 | ldrD | +0.5 | 0.9 | toxic polypeptide, small (NCBI) | compare |
| b1707 | ydiV | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b0338 | cynR | +0.5 | 1.7 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0450 | glnK | +0.5 | 0.9 | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB (NCBI) | compare |
| b1673 | ydhV | +0.5 | 2.1 | predicted oxidoreductase (NCBI) | compare |
| b0219 | yafV | +0.5 | 1.1 | predicted C-N hydrolase family amidase, NAD(P)-binding (NCBI) | compare |
| b2237 | inaA | +0.5 | 1.2 | hypothetical protein (NCBI) | compare |
| b4627 | ykfL | +0.5 | 1.4 | no description | compare |
| b1640 | ydhH | +0.5 | 1.8 | anhydro-N-acetylmuramic acid kinase (NCBI) | compare |
| b0523 | purE | +0.5 | 1.8 | phosphoribosylaminoimidazole carboxylase catalytic subunit (NCBI) | compare |
| b3057 | bacA | +0.5 | 2.2 | undecaprenyl pyrophosphate phosphatase (NCBI) | compare |
| b1520 | b1520 | +0.5 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b2560 | yfhB | +0.4 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b1412 | azoR | +0.4 | 1.4 | acyl carrier protein phosphodiesterase (NCBI) | compare |
| b1312 | ycjP | +0.4 | 1.6 | predicted sugar transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1629 | rsxC | +0.4 | 2.3 | electron transport complex protein RnfC (NCBI) | compare |