| | gene | name | fitness | t score | description | |
|---|
| b2289 | lrhA | +2.2 | 14.6 | DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes (NCBI) | compare |
| b3341 | rpsG | +1.5 | 2.5 | 30S ribosomal protein S7 (NCBI) | compare |
| b3764 | yifE | +1.4 | 4.9 | hypothetical protein (NCBI) | compare |
| b1231 | tyrT | +1.3 | 1.6 | tRNA-Tyr (NCBI) | compare |
| b1217 | chaB | +1.3 | 1.9 | cation transport regulator (NCBI) | compare |
| b4480 | hdfR | +1.2 | 7.0 | transcriptional regulator HdfR (NCBI) | compare |
| b3979 | thrT | +1.1 | 0.6 | tRNA-Thr (NCBI) | compare |
| b4596 | yciZ | +1.0 | 2.5 | hypothetical protein (RefSeq) | compare |
| b2683 | ygaH | +1.0 | 5.8 | predicted inner membrane protein (NCBI) | compare |
| b1811 | yoaH | +1.0 | 3.7 | hypothetical protein (NCBI) | compare |
| b2419 | yfeK | +0.9 | 1.8 | hypothetical protein (NCBI) | compare |
| b4589 | ylcI | +0.9 | 3.0 | hypothetical protein (RefSeq) | compare |
| b1293 | sapB | +0.9 | 1.6 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1642 | slyA | +0.9 | 2.0 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b3753 | rbsR | +0.9 | 6.4 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b1593 | b1593 | +0.9 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b1613 | manA | +0.9 | 1.6 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b4041 | plsB | +0.9 | 2.3 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b1292 | sapC | +0.9 | 1.7 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1842 | holE | +0.8 | 1.5 | DNA polymerase III, theta subunit (NCBI) | compare |
| b2659 | b2659 | +0.8 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1380 | ldhA | +0.8 | 2.3 | D-lactate dehydrogenase (NCBI) | compare |
| b2093 | gatB | +0.8 | 3.5 | galactitol-specific enzyme IIB component of PTS (NCBI) | compare |
| b3029 | ygiN | +0.8 | 2.0 | quinol monooxygenase (NCBI) | compare |
| b2684 | mprA | +0.8 | 3.3 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b4533 | ynfO | +0.8 | 1.8 | Qin prophage; predicted protein (NCBI) | compare |
| b2096 | gatY | +0.8 | 2.5 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b2518 | ndk | +0.8 | 2.0 | nucleoside diphosphate kinase (NCBI) | compare |
| b2217 | rcsB | +0.7 | 4.1 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b0678 | nagB | +0.7 | 2.9 | glucosamine-6-phosphate deaminase (NCBI) | compare |
| b2047 | wcaJ | +0.7 | 2.7 | predicted UDP-glucose lipid carrier transferase (NCBI) | compare |
| b4578 | insP | +0.7 | 2.0 | no description | compare |
| b0889 | lrp | +0.7 | 1.5 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b1827 | kdgR | +0.7 | 2.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1263 | trpD | +0.7 | 1.7 | bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase (NCBI) | compare |
| b0858 | ybjO | +0.7 | 1.4 | predicted inner membrane protein (NCBI) | compare |
| b4450 | arcZ | +0.7 | 1.8 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b2614 | grpE | +0.7 | 1.3 | heat shock protein (NCBI) | compare |
| b1548 | nohA | +0.7 | 1.4 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b1446 | ydcY | +0.6 | 1.6 | hypothetical protein (NCBI) | compare |
| b2156 | lysP | +0.6 | 4.3 | lysine transporter (NCBI) | compare |
| b2259 | pmrD | +0.6 | 0.7 | polymyxin resistance protein B (VIMSS) | compare |
| b4195 | ulaC | +0.6 | 2.1 | L-ascorbate-specific enzyme IIA component of PTS (NCBI) | compare |
| b0906 | ycaP | +0.6 | 3.0 | conserved inner membrane protein (NCBI) | compare |
| b1627 | rsxA | +0.6 | 2.3 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b1516 | lsrB | +0.6 | 2.6 | AI2 transporter (NCBI) | compare |
| b4675 | yoaJ | +0.6 | 2.2 | expressed protein (RefSeq) | compare |
| b2679 | proX | +0.6 | 2.7 | glycine betaine transporter subunit (NCBI) | compare |
| b0367 | tauC | +0.6 | 2.8 | taurine transporter subunit (NCBI) | compare |
| b0935 | ssuD | +0.6 | 2.8 | alkanesulfonate monooxygenase (NCBI) | compare |
| b2634 | yfjR | +0.6 | 2.6 | CP4-57 prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1312 | ycjP | +0.6 | 2.7 | predicted sugar transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b3752 | rbsK | +0.6 | 4.1 | ribokinase (NCBI) | compare |
| b1622 | malY | +0.6 | 1.7 | bifunctional beta-cystathionase, PLP-dependent/ regulator of maltose regulon (NCBI) | compare |
| b4484 | cpxP | +0.6 | 2.3 | periplasmic protein combats stress (NCBI) | compare |
| b1846 | yebE | +0.6 | 2.1 | hypothetical protein (NCBI) | compare |
| b0776 | bioF | +0.6 | 3.2 | 8-amino-7-oxononanoate synthase (NCBI) | compare |
| b4416 | rybA | +0.6 | 1.0 | unknown RNA (NCBI) | compare |
| b4592 | yccB | +0.6 | 1.3 | hypothetical protein (RefSeq) | compare |
| b4613 | dinQ | +0.6 | 1.3 | Damage inducible, function unknown (RefSeq) | compare |
| b2939 | yqgB | +0.6 | 0.9 | predicted protein (RefSeq) | compare |
| b1582 | ynfA | +0.6 | 1.3 | hypothetical protein (NCBI) | compare |
| b0866 | ybjQ | +0.6 | 1.0 | hypothetical protein (NCBI) | compare |
| b1520 | b1520 | +0.6 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b4692 | oweE | +0.6 | 1.7 | no description | compare |
| b1433 | b1433 | +0.6 | 2.6 | putative membrane transport protein (VIMSS) | compare |
| b1134 | ymfB | +0.6 | 1.2 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b4436 | ryeC | +0.5 | 1.0 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b0556 | rzpD | +0.5 | 1.4 | DLP12 prophage; predicted murein endopeptidase (NCBI) | compare |
| b2015 | yeeY | +0.5 | 3.0 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b1427 | rimL | +0.5 | 1.6 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b2009 | sbmC | +0.5 | 2.2 | DNA gyrase inhibitor (NCBI) | compare |
| b1349 | recT | +0.5 | 2.5 | Rac prophage; recombination and repair protein (NCBI) | compare |
| b1465 | narV | +0.5 | 1.5 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b0782 | moaB | +0.5 | 0.8 | molybdopterin biosynthesis protein B (NCBI) | compare |
| b1418 | cybB | +0.5 | 1.8 | cytochrome b(561) (VIMSS) | compare |
| b1006 | ycdG | +0.5 | 2.2 | putative transport protein (VIMSS) | compare |
| b4529 | ydbJ | +0.5 | 0.7 | hypothetical protein (NCBI) | compare |
| b2279 | nuoK | +0.5 | 0.8 | NADH dehydrogenase subunit K (NCBI) | compare |
| b1104 | ycfL | +0.5 | 0.8 | hypothetical protein (NCBI) | compare |
| b0977 | hyaF | +0.5 | 2.2 | protein involved in nickel incorporation into hydrogenase-1 proteins (NCBI) | compare |
| b1821 | b1821 | +0.5 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b4241 | treR | +0.5 | 3.7 | trehalose repressor (NCBI) | compare |
| b2298 | yfcC | +0.5 | 2.6 | putative S-transferase (VIMSS) | compare |
| b1706 | ydiU | +0.5 | 2.6 | hypothetical protein (NCBI) | compare |
| b4515 | ybgT | +0.5 | 1.0 | hypothetical protein (NCBI) | compare |
| b2732 | ygbA | +0.5 | 2.9 | hypothetical protein (NCBI) | compare |
| b1867 | yecD | +0.5 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b1618 | uidR | +0.5 | 1.5 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2072 | yegK | +0.5 | 2.7 | hypothetical protein (NCBI) | compare |
| b1362 | rzpR | +0.5 | 1.1 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b2682 | ygaZ | +0.5 | 1.5 | predicted transporter (NCBI) | compare |
| b1684 | sufA | +0.5 | 0.9 | iron-sulfur cluster assembly scaffold protein (NCBI) | compare |
| b2706 | gutM | +0.5 | 1.0 | DNA-binding transcriptional activator of glucitol operon (NCBI) | compare |
| b0418 | pgpA | +0.5 | 2.5 | phosphatidylglycerophosphatase A (NCBI) | compare |
| b2058 | wcaB | +0.5 | 0.6 | predicted acyl transferase (NCBI) | compare |
| b2629 | yfjM | +0.5 | 2.9 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b0250 | ykfB | +0.5 | 2.0 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b1109 | ndh | +0.5 | 1.8 | respiratory NADH dehydrogenase 2/cupric reductase (NCBI) | compare |
| b0503 | ybbB | +0.5 | 2.0 | tRNA 2-selenouridine synthase, selenophosphate-dependent (NCBI) | compare |
| b1853 | yebK | +0.5 | 1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4545 | ypdJ | +0.5 | 0.8 | no description | compare |
| b0961 | yccF | +0.5 | 1.7 | conserved inner membrane protein (NCBI) | compare |
| b2480 | bcp | +0.5 | 1.9 | thioredoxin-dependent thiol peroxidase (NCBI) | compare |
| b0991 | ymcE | +0.5 | 1.9 | cold shock gene (NCBI) | compare |
| b2605 | yfiB | +0.5 | 2.0 | predicted outer membrane lipoprotein (NCBI) | compare |
| b2290 | yfbQ | +0.5 | 3.4 | aspartate aminotransferase (NCBI) | compare |
| b2689 | yqaA | +0.5 | 1.3 | conserved inner membrane protein (NCBI) | compare |
| b4521 | ycgI | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b4551 | yheV | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b0127 | yadG | +0.5 | 1.8 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b0289 | yagV | +0.5 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b0385 | yaiC | +0.4 | 2.3 | predicted diguanylate cyclase (NCBI) | compare |
| b3071 | yqjI | +0.4 | 1.7 | predicted transcriptional regulator (NCBI) | compare |
| b1473 | yddG | +0.4 | 2.4 | predicted methyl viologen efflux pump (RefSeq) | compare |
| b0831 | yliC | +0.4 | 2.2 | predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b4282 | yjhE | +0.4 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b1007 | b1007 | +0.4 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1475 | fdnH | +0.4 | 2.2 | formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible (NCBI) | compare |
| b1988 | nac | +0.4 | 1.5 | DNA-binding transcriptional dual regulator of nitrogen assimilation (NCBI) | compare |
| b1135 | ymfC | +0.4 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b0243 | proA | +0.4 | 2.6 | gamma-glutamyl phosphate reductase (NCBI) | compare |
| b4152 | frdC | +0.4 | 0.9 | fumarate reductase subunit C (NCBI) | compare |
| b4538 | yoeF | +0.4 | 0.5 | hypothetical protein (RefSeq) | compare |
| b2080 | b2080 | +0.4 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1581 | rspA | +0.4 | 1.3 | predicted dehydratase (NCBI) | compare |
| b4695 | ykgT | +0.4 | 0.7 | no description | compare |
| b1187 | fadR | +0.4 | 1.7 | fatty acid metabolism regulator (NCBI) | compare |
| b2443 | yffL | +0.4 | 1.9 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b1808 | yoaA | +0.4 | 1.9 | conserved protein with nucleoside triphosphate hydrolase domain (NCBI) | compare |
| b0682 | ybfN | +0.4 | 1.9 | predicted lipoprotein (NCBI) | compare |
| b2061 | wzb | +0.4 | 0.9 | protein-tyrosine phosphatase (NCBI) | compare |
| b0655 | gltI | +0.4 | 1.3 | glutamate and aspartate transporter subunit (NCBI) | compare |
| b3228 | sspB | +0.4 | 1.6 | ClpXP protease specificity-enhancing factor (NCBI) | compare |
| b4373 | rimI | +0.4 | 0.8 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b1727 | yniC | +0.4 | 1.2 | predicted hydrolase (NCBI) | compare |
| b4277 | yjgZ | +0.4 | 2.3 | KpLE2 phage-like element; predicted protein (NCBI) | compare |
| b2674 | nrdI | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b2433 | b2433 | +0.4 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1359 | ydaU | +0.4 | 1.6 | Rac prophage; conserved protein (NCBI) | compare |
| b1279 | yciS | +0.4 | 0.5 | conserved inner membrane protein (NCBI) | compare |
| b0447 | ybaO | +0.4 | 1.4 | putative LRP-like transcriptional regulator (VIMSS) | compare |
| b3250 | mreC | +0.4 | 1.0 | cell wall structural complex MreBCD transmembrane component MreC (NCBI) | compare |
| b2050 | wcaI | +0.4 | 1.9 | predicted glycosyl transferase (NCBI) | compare |
| b0450 | glnK | +0.4 | 1.2 | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB (NCBI) | compare |
| b0753 | ybgS | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b1558 | cspF | +0.4 | 0.9 | Qin prophage; cold shock protein (NCBI) | compare |
| b0965 | b0965 | +0.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2301 | yfcF | +0.4 | 1.6 | predicted enzyme (NCBI) | compare |
| b2883 | guaD | +0.4 | 2.2 | guanine deaminase (NCBI) | compare |
| b4641 | yoeH | +0.4 | 1.8 | no description | compare |
| b1521 | uxaB | +0.4 | 2.2 | tagaturonate reductase (NCBI) | compare |
| b1962 | yedJ | +0.4 | 1.8 | predicted phosphohydrolase (NCBI) | compare |
| b3119 | tdcR | +0.4 | 1.2 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b3162 | deaD | +0.4 | 1.5 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b4144 | yjeI | +0.4 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b2662 | gabT | +0.4 | 2.2 | 4-aminobutyrate aminotransferase (NCBI) | compare |
| b4656 | yjhY | +0.4 | 2.1 | no description | compare |
| b0641 | rlpB | +0.4 | 0.8 | minor lipoprotein (NCBI) | compare |
| b1379 | hslJ | +0.4 | 1.5 | heat-inducible protein (NCBI) | compare |
| b1656 | sodB | +0.4 | 0.8 | superoxide dismutase, Fe (NCBI) | compare |
| b1423 | ydcJ | +0.4 | 1.3 | hypothetical protein (NCBI) | compare |
| b2343 | b2343 | +0.4 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b2281 | nuoI | +0.4 | 1.0 | NADH dehydrogenase subunit I (NCBI) | compare |
| b0219 | yafV | +0.4 | 0.9 | predicted C-N hydrolase family amidase, NAD(P)-binding (NCBI) | compare |
| b1323 | tyrR | +0.4 | 1.7 | DNA-binding transcriptional dual regulator, tyrosine-binding (NCBI) | compare |
| b1336 | ydaH | +0.4 | 1.4 | putative pump protein (transport) (VIMSS) | compare |
| b2336 | yfcS | +0.4 | 2.3 | predicted periplasmic pilus chaperone (NCBI) | compare |
| b1731 | cedA | +0.4 | 1.2 | cell division modulator (RefSeq) | compare |
| b1725 | yniA | +0.4 | 1.7 | predicted phosphotransferase/kinase (NCBI) | compare |
| b0944 | ycbF | +0.4 | 2.2 | putative chaperone (VIMSS) | compare |
| b2432 | yfeY | +0.4 | 0.9 | hypothetical protein (NCBI) | compare |
| b4363 | yjjB | +0.4 | 1.2 | conserved inner membrane protein (RefSeq) | compare |
| b4543 | ypaA | +0.4 | 1.5 | predicted protein (NCBI) | compare |
| b0110 | ampD | +0.4 | 1.9 | N-acetyl-anhydromuranmyl-L-alanine amidase (NCBI) | compare |
| b1617 | uidA | +0.4 | 1.4 | beta-D-glucuronidase (NCBI) | compare |
| b1697 | ydiQ | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b1849 | purT | +0.4 | 1.9 | phosphoribosylglycinamide formyltransferase 2 (NCBI) | compare |
| b1949 | fliQ | +0.4 | 1.0 | flagellar biosynthesis protein Q (NCBI) | compare |
| b4014 | aceB | +0.4 | 2.5 | malate synthase (NCBI) | compare |
| b0010 | yaaH | +0.4 | 1.6 | conserved inner membrane protein associated with acetate transport (NCBI) | compare |
| b2535 | csiE | +0.4 | 2.7 | orf, hypothetical protein (VIMSS) | compare |
| b0805 | fiu | +0.4 | 2.3 | predicted iron outer membrane transporter (NCBI) | compare |
| b2785 | rumA | +0.4 | 2.7 | 23S rRNA (uracil-5-)-methyltransferase (NCBI) | compare |
| b2454 | eutJ | +0.4 | 1.7 | predicted chaperonin, ethanolamine utilization protein (NCBI) | compare |
| b1219 | ychN | +0.4 | 1.3 | hypothetical protein (NCBI) | compare |
| b0549 | ybcO | +0.4 | 0.9 | DLP12 prophage; predicted protein (NCBI) | compare |
| b1765 | ydjA | +0.4 | 0.4 | predicted oxidoreductase (NCBI) | compare |
| b2095 | gatZ | +0.4 | 1.9 | D-tagatose 1,6-bisphosphate aldolase 2, subunit (NCBI) | compare |
| b2105 | yohL | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b3057 | bacA | +0.4 | 1.8 | undecaprenyl pyrophosphate phosphatase (NCBI) | compare |
| b4566 | yjhX | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b4093 | phnO | +0.4 | 1.6 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b1261 | trpB | +0.4 | 0.8 | tryptophan synthase subunit beta (NCBI) | compare |
| b1661 | cfa | +0.4 | 1.5 | cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) (NCBI) | compare |
| b4627 | ykfL | +0.4 | 1.2 | no description | compare |
| b4227 | ytfQ | +0.4 | 1.6 | predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) | compare |
| b0714 | nei | +0.4 | 1.2 | endonuclease VIII/ 5-formyluracil/5-hydroxymethyluracil DNA glycosylase (NCBI) | compare |
| b3918 | cdh | +0.4 | 2.4 | CDP-diacylglycerol pyrophosphatase (NCBI) | compare |
| b2442 | intZ | +0.4 | 1.4 | CPZ-55 prophage; predicted integrase (RefSeq) | compare |