| | gene | name | fitness | t score | description | |
|---|
| b0902 | pflA | -5.2 | -6.2 | pyruvate formate lyase activating enzyme 1 (NCBI) | compare |
| b0463 | acrA | -4.5 | -10.5 | multidrug efflux system (NCBI) | compare |
| b0462 | acrB | -4.4 | -17.1 | multidrug efflux system protein (NCBI) | compare |
| b2512 | yfgL | -4.3 | -5.1 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b2188 | yejM | -4.3 | -9.2 | predicted hydrolase, inner membrane (NCBI) | compare |
| b0903 | pflB | -4.3 | -11.6 | pyruvate formate lyase I (NCBI) | compare |
| b2494 | yfgC | -4.1 | -8.2 | predicted peptidase (NCBI) | compare |
| b3021 | ygiT | -3.9 | -2.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3035 | tolC | -3.8 | -7.2 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b0957 | ompA | -3.8 | -3.6 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b4509 | ylcG | -3.7 | -3.5 | DLP12 prophage; predicted protein (NCBI) | compare |
| b2501 | ppk | -3.5 | -8.9 | polyphosphate kinase (NCBI) | compare |
| b3842 | rfaH | -3.5 | -4.7 | transcriptional activator RfaH (NCBI) | compare |
| b1334 | fnr | -3.4 | -3.2 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b3632 | rfaQ | -3.4 | -14.3 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b2531 | iscR | -3.3 | -2.3 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0677 | nagA | -3.3 | -4.9 | N-acetylglucosamine-6-phosphate deacetylase (NCBI) | compare |
| b0222 | lpcA | -3.2 | -2.2 | phosphoheptose isomerase (NCBI) | compare |
| b0178 | hlpA | -3.2 | -4.8 | periplasmic chaperone (NCBI) | compare |
| b1830 | prc | -3.1 | -3.7 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b3052 | rfaE | -3.1 | -2.2 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b3620 | rfaF | -3.1 | -3.6 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b3163 | nlpI | -3.1 | -4.6 | hypothetical protein (NCBI) | compare |
| b0990 | cspG | -3.0 | -2.0 | DNA-binding transcriptional regulator (NCBI) | compare |
| b4603 | rseX | -2.9 | -1.4 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b1677 | lpp | -2.9 | -2.8 | murein lipoprotein (NCBI) | compare |
| b4237 | nrdG | -2.9 | -10.5 | anaerobic ribonucleotide reductase activating protein (NCBI) | compare |
| b4608 | ryfC | -2.9 | -5.0 | Novel sRNA, function unknown (RefSeq) | compare |
| b3631 | rfaG | -2.9 | -8.6 | glucosyltransferase I (NCBI) | compare |
| b0847 | ybjL | -2.9 | -10.3 | hypothetical protein (NCBI) | compare |
| b1493 | gadB | -2.8 | -1.4 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b4025 | pgi | -2.8 | -7.9 | glucose-6-phosphate isomerase (NCBI) | compare |
| b0145 | dksA | -2.8 | -2.7 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b4238 | nrdD | -2.8 | -15.2 | anaerobic ribonucleoside triphosphate reductase (NCBI) | compare |
| b0053 | surA | -2.8 | -2.7 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b1361 | ydaW | -2.7 | -1.3 | orf, hypothetical protein (VIMSS) | compare |
| b0623 | cspE | -2.7 | -2.2 | cold shock protein E (NCBI) | compare |
| b3621 | rfaC | -2.6 | -2.6 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b2017 | yefM | -2.6 | -2.5 | orf, hypothetical protein (VIMSS) | compare |
| b1236 | galU | -2.6 | -2.5 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b0740 | tolB | -2.5 | -2.9 | translocation protein TolB precursor (NCBI) | compare |
| b3630 | rfaP | -2.5 | -6.0 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b2642 | yfjW | -2.4 | -1.6 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b0739 | tolA | -2.3 | -1.6 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b3619 | rfaD | -2.3 | -2.2 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b3627 | rfaI | -2.2 | -6.1 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b2617 | smpA | -2.2 | -3.4 | small membrane protein A (VIMSS) | compare |
| b2346 | vacJ | -2.1 | -7.5 | predicted lipoprotein (NCBI) | compare |
| b0688 | pgm | -2.1 | -2.9 | phosphoglucomutase (NCBI) | compare |
| b1482 | osmC | -2.1 | -2.2 | osmotically inducible, stress-inducible membrane protein (NCBI) | compare |
| b2064 | asmA | -2.0 | -3.6 | predicted assembly protein (NCBI) | compare |
| b3199 | yrbK | -2.0 | -3.0 | hypothetical protein (NCBI) | compare |
| b4701 | sokX | -2.0 | -1.4 | sok-related sRNA, function unknown (RefSeq) | compare |
| b3195 | yrbF | -2.0 | -9.8 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b1831 | proQ | -2.0 | -4.2 | putative solute/DNA competence effector (NCBI) | compare |
| b4702 | mgtL | -2.0 | -1.9 | regulatory leader peptide for mgtA (NCBI) | compare |
| b3644 | yicC | -1.9 | -5.5 | hypothetical protein (NCBI) | compare |
| b1823 | cspC | -1.9 | -2.2 | stress protein, member of the CspA-family (NCBI) | compare |
| b0730 | mngR | -1.9 | -1.3 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b0737 | tolQ | -1.9 | -1.8 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b1863 | ruvC | -1.9 | -1.8 | Holliday junction resolvase (NCBI) | compare |
| b2808 | gcvA | -1.8 | -3.4 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4220 | ytfM | -1.8 | -9.4 | predicted outer membrane protein and surface antigen (NCBI) | compare |
| b0564 | appY | -1.8 | -1.2 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b3405 | ompR | -1.8 | -4.5 | osmolarity response regulator (NCBI) | compare |
| b0819 | ybiS | -1.8 | -7.3 | hypothetical protein (NCBI) | compare |
| b2189 | proL | -1.8 | -2.0 | tRNA-Pro (NCBI) | compare |
| b4480 | hdfR | -1.8 | -5.3 | transcriptional regulator HdfR (NCBI) | compare |
| b4458 | oxyS | -1.8 | -1.7 | global regulatory RNA (NCBI) | compare |
| b2572 | rseA | -1.8 | -3.5 | anti-sigma factor (NCBI) | compare |
| b0741 | pal | -1.8 | -3.3 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b3973 | birA | -1.8 | -3.1 | biotin--protein ligase (NCBI) | compare |
| b0738 | tolR | -1.8 | -1.2 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b1286 | rnb | -1.7 | -2.3 | exoribonuclease II (NCBI) | compare |
| b0802 | ybiJ | -1.7 | -2.1 | hypothetical protein (NCBI) | compare |
| b3784 | rfe | -1.7 | -9.8 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b1290 | sapF | -1.7 | -1.6 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b3341 | rpsG | -1.7 | -1.6 | 30S ribosomal protein S7 (NCBI) | compare |
| b4221 | ytfN | -1.7 | -11.7 | hypothetical protein (NCBI) | compare |
| b3194 | yrbE | -1.7 | -8.4 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b0436 | tig | -1.7 | -6.8 | trigger factor (NCBI) | compare |
| b3600 | mtlD | -1.7 | -7.6 | mannitol-1-phosphate 5-dehydrogenase (NCBI) | compare |
| b2859 | ygeO | -1.6 | -1.5 | hypothetical protein (RefSeq) | compare |
| b1685 | ydiH | -1.6 | -1.6 | predicted protein (RefSeq) | compare |
| b4402 | yjjY | -1.6 | -1.0 | hypothetical protein (NCBI) | compare |
| b1882 | cheY | -1.6 | -0.8 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b3628 | rfaB | -1.6 | -6.1 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b2571 | rseB | -1.6 | -6.8 | periplasmic negative regulator of sigmaE (NCBI) | compare |
| b2553 | glnB | -1.6 | -4.4 | regulatory protein P-II for glutamine synthetase (NCBI) | compare |
| b1291 | sapD | -1.5 | -1.7 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b4426 | isrA | -1.5 | -2.1 | unknown RNA (NCBI) | compare |
| b3229 | sspA | -1.5 | -2.0 | stringent starvation protein A (NCBI) | compare |
| b2506 | yfgI | -1.5 | -1.7 | hypothetical protein (NCBI) | compare |
| b0058 | rluA | -1.5 | -7.0 | pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) (NCBI) | compare |
| b2174 | b2174 | -1.5 | -5.5 | orf, hypothetical protein (VIMSS) | compare |
| b3649 | rpoZ | -1.5 | -2.0 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b1620 | malI | -1.5 | -2.3 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1855 | lpxM | -1.4 | -3.6 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b3609 | secB | -1.4 | -3.3 | export protein SecB (NCBI) | compare |
| b3242 | yhcR | -1.4 | -4.3 | orf, hypothetical protein (VIMSS) | compare |
| b0014 | dnaK | -1.4 | -1.8 | molecular chaperone DnaK (NCBI) | compare |
| b0548 | ninE | -1.4 | -1.8 | DLP12 prophage; conserved protein (NCBI) | compare |
| b1104 | ycfL | -1.3 | -1.9 | hypothetical protein (NCBI) | compare |
| b4535 | yniD | -1.3 | -1.2 | predicted protein (RefSeq) | compare |
| b3192 | yrbC | -1.3 | -6.7 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b1476 | fdnI | -1.3 | -1.1 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b4394 | yjjX | -1.3 | -2.6 | orf, hypothetical protein (VIMSS) | compare |
| b1438 | ydcQ | -1.3 | -2.5 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b2620 | smpB | -1.3 | -1.2 | SsrA-binding protein (NCBI) | compare |
| b0239 | frsA | -1.3 | -5.8 | fermentation/respiration switch protein (NCBI) | compare |
| b3930 | menA | -1.3 | -8.3 | 1,4-dihydroxy-2-naphthoate octaprenyltransferase (NCBI) | compare |
| b0868 | b0868 | -1.3 | -6.7 | putative nucleotide di-P-sugar epimerase or dehydratase (VIMSS) | compare |
| b3253 | yhdH | -1.3 | -5.8 | predicted oxidoreductase, Zn-dependent and NAD(P)-binding (NCBI) | compare |
| b1241 | adhE | -1.3 | -6.2 | fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase (NCBI) | compare |
| b3193 | yrbD | -1.3 | -6.1 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b3443 | yrhA | -1.3 | -1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1961 | dcm | -1.3 | -1.4 | DNA cytosine methylase (NCBI) | compare |
| b1950 | fliR | -1.3 | -1.8 | flagellar biosynthesis protein R (NCBI) | compare |
| b4520 | ymgF | -1.3 | -1.4 | hypothetical protein (NCBI) | compare |
| b1259 | yciG | -1.2 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1818 | manY | -1.2 | -2.1 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b0550 | rusA | -1.2 | -2.5 | DLP12 prophage; endonuclease RUS (NCBI) | compare |
| b1332 | ynaJ | -1.2 | -0.8 | predicted inner membrane protein (NCBI) | compare |
| b1249 | cls | -1.2 | -4.7 | cardiolipin synthetase (NCBI) | compare |
| b2824 | ygdB | -1.2 | -3.3 | orf, hypothetical protein (VIMSS) | compare |
| b1503 | ydeR | -1.2 | -2.0 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b4438 | cyaR | -1.2 | -2.2 | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq) | compare |
| b1573 | ydfC | -1.2 | -0.9 | Qin prophage; predicted protein (RefSeq) | compare |
| b1550 | b1550 | -1.2 | -1.3 | orf, hypothetical protein (VIMSS) | compare |
| b3129 | sohA | -1.2 | -2.9 | predicted regulator (NCBI) | compare |
| b2567 | rnc | -1.2 | -0.7 | ribonuclease III (NCBI) | compare |
| b3858 | yihD | -1.2 | -1.7 | hypothetical protein (NCBI) | compare |
| b3387 | dam | -1.2 | -6.7 | DNA adenine methylase (NCBI) | compare |
| b0300 | ykgA | -1.2 | -1.7 | putative ARAC-type regulatory protein (VIMSS) | compare |
| b0998 | torD | -1.2 | -1.1 | chaperone protein TorD (NCBI) | compare |
| b2241 | glpA | -1.2 | -6.7 | sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)-binding (NCBI) | compare |
| b3197 | kdsD | -1.2 | -5.7 | D-arabinose 5-phosphate isomerase (NCBI) | compare |
| b4139 | aspA | -1.2 | -6.1 | aspartate ammonia-lyase (aspartase) (VIMSS) | compare |
| b2258 | b2258 | -1.1 | -1.2 | putative transport/receptor protein (VIMSS) | compare |
| b4676 | yoaK | -1.1 | -0.7 | expressed protein (RefSeq) | compare |
| b4413 | sokC | -1.1 | -1.4 | regulatory antisense RNA (NCBI) | compare |
| b0929 | ompF | -1.1 | -3.1 | outer membrane porin 1a (Ia;b;F) (NCBI) | compare |
| b3778 | rep | -1.1 | -4.3 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b2085 | b2085 | -1.1 | -2.4 | orf, hypothetical protein (VIMSS) | compare |
| b2376 | ypdI | -1.1 | -2.0 | predicted lipoprotein involved in colanic acid biosynthesis (NCBI) | compare |
| b0866 | ybjQ | -1.1 | -1.2 | hypothetical protein (NCBI) | compare |
| b3191 | yrbB | -1.1 | -5.6 | orf, hypothetical protein (VIMSS) | compare |
| b3026 | qseC | -1.1 | -1.7 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b0827 | moeA | -1.1 | -3.4 | molybdopterin biosynthesis protein (NCBI) | compare |
| b1111 | ycfQ | -1.1 | -2.1 | orf, hypothetical protein (VIMSS) | compare |
| b4000 | hupA | -1.1 | -3.2 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b2369 | evgA | -1.1 | -1.7 | DNA-binding response regulator in two-component regulatory system with EvgS (NCBI) | compare |
| b3148 | yraN | -1.1 | -3.0 | hypothetical protein (NCBI) | compare |
| b0364 | yaiS | -1.1 | -2.0 | orf, hypothetical protein (VIMSS) | compare |
| b0200 | gmhB | -1.1 | -0.7 | hypothetical protein (NCBI) | compare |
| b2144 | sanA | -1.1 | -6.2 | hypothetical protein (NCBI) | compare |
| b1085 | b1085 | -1.1 | -1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2243 | glpC | -1.1 | -4.0 | sn-glycerol-3-phosphate dehydrogenase (anaerobic), small subunit (NCBI) | compare |
| b1548 | nohA | -1.1 | -1.0 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b1566 | flxA | -1.0 | -2.1 | Qin prophage; predicted protein (NCBI) | compare |
| b0082 | mraW | -1.0 | -2.1 | S-adenosyl-methyltransferase (NCBI) | compare |
| b4511 | ybdZ | -1.0 | -2.4 | hypothetical protein (NCBI) | compare |
| b3764 | yifE | -1.0 | -3.2 | hypothetical protein (NCBI) | compare |
| b4201 | priB | -1.0 | -1.8 | primosomal replication protein N (NCBI) | compare |
| b0232 | yafN | -1.0 | -0.6 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b2317 | dedA | -1.0 | -2.6 | conserved inner membrane protein (NCBI) | compare |
| b4179 | vacB | -1.0 | -3.3 | putative enzyme (VIMSS) | compare |
| b0617 | citD | -1.0 | -2.0 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b0049 | apaH | -1.0 | -1.7 | diadenosinetetraphosphatase (NCBI) | compare |
| b0729 | sucD | -1.0 | -1.9 | succinyl-CoA synthetase subunit alpha (NCBI) | compare |
| b1969 | yedW | -1.0 | -2.4 | putative 2-component transcriptional regulator (VIMSS) | compare |
| b3794 | rffM | -1.0 | -4.5 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b3636 | rpmG | -1.0 | -1.4 | 50S ribosomal protein L33 (NCBI) | compare |
| b2820 | recB | -1.0 | -0.7 | exonuclease V (RecBCD complex), beta subunit (NCBI) | compare |
| b3839 | tatC | -1.0 | -4.1 | TatABCE protein translocation system subunit (NCBI) | compare |
| b0092 | ddlB | -1.0 | -3.7 | D-alanylalanine synthetase (NCBI) | compare |
| b4545 | ypdJ | -1.0 | -1.3 | no description | compare |
| b3961 | oxyR | -1.0 | -5.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1183 | umuD | -1.0 | -1.6 | DNA polymerase V, subunit D (NCBI) | compare |
| b2576 | srmB | -1.0 | -1.9 | ATP-dependent RNA helicase (NCBI) | compare |
| b3916 | pfkA | -1.0 | -1.1 | 6-phosphofructokinase (NCBI) | compare |
| b3932 | hslV | -1.0 | -5.8 | ATP-dependent protease peptidase subunit (NCBI) | compare |
| b3931 | hslU | -1.0 | -6.1 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b2689 | yqaA | -1.0 | -2.4 | conserved inner membrane protein (NCBI) | compare |
| b4436 | ryeC | -1.0 | -1.4 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b3469 | zntA | -1.0 | -4.2 | zinc, cobalt and lead efflux system (NCBI) | compare |
| b4559 | yjdO | -0.9 | -1.7 | hypothetical protein (NCBI) | compare |
| b1604 | ydgH | -0.9 | -2.2 | hypothetical protein (NCBI) | compare |
| b4146 | yjeK | -0.9 | -0.6 | predicted lysine aminomutase (NCBI) | compare |
| b1626 | b1626 | -0.9 | -3.8 | orf, hypothetical protein (VIMSS) | compare |
| b3466 | yhhL | -0.9 | -3.1 | conserved inner membrane protein (NCBI) | compare |
| b0904 | focA | -0.9 | -4.0 | formate transporter (NCBI) | compare |
| b4640 | yoeG | -0.9 | -1.1 | no description | compare |
| b2830 | nudH | -0.9 | -1.0 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b2165 | yeiN | -0.9 | -3.1 | hypothetical protein (NCBI) | compare |
| b2215 | ompC | -0.9 | -5.0 | outer membrane porin protein C (NCBI) | compare |
| b2935 | tktA | -0.9 | -0.9 | transketolase 1, thiamin-binding (NCBI) | compare |
| b1107 | nagZ | -0.9 | -2.8 | beta-hexosaminidase (NCBI) | compare |
| b0814 | ompX | -0.9 | -2.5 | outer membrane protein X (NCBI) | compare |
| b2363 | yfdT | -0.9 | -1.7 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |