| | gene | name | fitness | t score | description | |
|---|
| b0464 | acrR | +4.6 | 27.8 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3169 | nusA | +3.9 | 8.8 | transcription elongation factor NusA (NCBI) | compare |
| b0439 | lon | +3.2 | 11.5 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b3390 | aroK | +3.2 | 6.7 | shikimate kinase I (NCBI) | compare |
| b0955 | ycbZ | +3.1 | 20.4 | predicted peptidase (NCBI) | compare |
| b1187 | fadR | +3.0 | 9.8 | fatty acid metabolism regulator (NCBI) | compare |
| b3493 | pitA | +2.8 | 18.8 | phosphate transporter, low-affinity (NCBI) | compare |
| b1049 | mdoH | +2.2 | 15.8 | glucosyltransferase MdoH (NCBI) | compare |
| b1048 | mdoG | +2.1 | 11.8 | glucan biosynthesis protein, periplasmic (NCBI) | compare |
| b3205 | yhbJ | +2.1 | 8.8 | hypothetical protein (NCBI) | compare |
| b3979 | thrT | +2.0 | 1.2 | tRNA-Thr (NCBI) | compare |
| b3806 | cyaA | +1.9 | 8.0 | adenylate cyclase (NCBI) | compare |
| b1530 | marR | +1.9 | 5.1 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b0912 | ihfB | +1.7 | 6.5 | integration host factor subunit beta (NCBI) | compare |
| b2688 | gshA | +1.7 | 9.4 | glutamate--cysteine ligase (NCBI) | compare |
| b2318 | truA | +1.7 | 4.8 | tRNA pseudouridine synthase A (NCBI) | compare |
| b2175 | spr | +1.6 | 5.9 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b4441 | glmY | +1.6 | 4.1 | sRNA activator of glmS mRNA (RefSeq) | compare |
| b2517 | yfgB | +1.6 | 9.7 | predicted enzyme (NCBI) | conserved |
| b2684 | mprA | +1.6 | 4.5 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b4241 | treR | +1.6 | 12.6 | trehalose repressor (NCBI) | compare |
| b0125 | hpt | +1.5 | 6.5 | hypoxanthine phosphoribosyltransferase (VIMSS) | compare |
| b0685 | ybfE | +1.4 | 3.7 | orf, hypothetical protein (VIMSS) | compare |
| b1095 | fabF | +1.3 | 8.1 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b1628 | rsxB | +1.3 | 3.8 | electron transport complex protein RnfB (NCBI) | compare |
| b0209 | yafD | +1.3 | 6.8 | hypothetical protein (NCBI) | compare |
| b0926 | ycbK | +1.3 | 5.0 | hypothetical protein (NCBI) | compare |
| b3977 | tyrU | +1.2 | 1.3 | tRNA-Tyr (NCBI) | compare |
| b3688 | yidQ | +1.2 | 5.7 | orf, hypothetical protein (VIMSS) | compare |
| b4042 | dgkA | +1.2 | 2.6 | diacylglycerol kinase (NCBI) | compare |
| b2096 | gatY | +1.2 | 5.1 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b2814 | metZ | +1.2 | 2.2 | tRNA-Met (NCBI) | compare |
| b2516 | yfgA | +1.1 | 7.5 | hypothetical protein (NCBI) | compare |
| b2614 | grpE | +1.1 | 2.0 | heat shock protein (NCBI) | compare |
| b2939 | yqgB | +1.1 | 1.7 | predicted protein (RefSeq) | compare |
| b1865 | nudB | +1.1 | 1.9 | dATP pyrophosphohydrolase (NCBI) | compare |
| b3204 | ptsN | +1.1 | 3.3 | sugar-specific enzyme IIA component of PTS (NCBI) | compare |
| b3781 | trxA | +1.1 | 3.5 | thioredoxin 1 (VIMSS) | compare |
| b1582 | ynfA | +1.1 | 2.6 | hypothetical protein (NCBI) | compare |
| b4171 | miaA | +1.1 | 3.0 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b4063 | soxR | +1.1 | 3.0 | DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing (NCBI) | compare |
| b2951 | yggS | +1.1 | 4.4 | predicted enzyme (NCBI) | compare |
| b2058 | wcaB | +1.0 | 1.4 | predicted acyl transferase (NCBI) | compare |
| b3071 | yqjI | +1.0 | 3.7 | predicted transcriptional regulator (NCBI) | compare |
| b1263 | trpD | +1.0 | 2.7 | bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase (NCBI) | compare |
| b1684 | sufA | +1.0 | 2.5 | iron-sulfur cluster assembly scaffold protein (NCBI) | compare |
| b1712 | ihfA | +1.0 | 1.4 | integration host factor subunit alpha (NCBI) | compare |
| b0407 | yajC | +1.0 | 2.6 | preprotein translocase subunit YajC (NCBI) | compare |
| b4699 | fnrS | +1.0 | 1.1 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b4041 | plsB | +1.0 | 2.4 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b2947 | gshB | +1.0 | 3.8 | glutathione synthetase (NCBI) | compare |
| b0858 | ybjO | +0.9 | 2.5 | predicted inner membrane protein (NCBI) | compare |
| b3792 | wzxE | +0.9 | 5.7 | O-antigen translocase (NCBI) | compare |
| b0624 | crcB | +0.9 | 1.3 | camphor resistance protein CrcB (NCBI) | compare |
| b4416 | rybA | +0.9 | 1.7 | unknown RNA (NCBI) | compare |
| b1848 | yebG | +0.9 | 1.7 | conserved protein regulated by LexA (NCBI) | compare |
| b2281 | nuoI | +0.9 | 2.3 | NADH dehydrogenase subunit I (NCBI) | compare |
| b4572 | ylbE | +0.9 | 2.6 | no description | compare |
| b4529 | ydbJ | +0.9 | 1.2 | hypothetical protein (NCBI) | compare |
| b4151 | frdD | +0.9 | 3.1 | fumarate reductase subunit D (NCBI) | compare |
| b2187 | yejL | +0.9 | 2.9 | hypothetical protein (NCBI) | compare |
| b4630 | ykgP | +0.9 | 2.6 | no description | compare |
| b1805 | fadD | +0.8 | 5.2 | acyl-CoA synthase (NCBI) | compare |
| b1667 | ydhR | +0.8 | 2.5 | hypothetical protein (NCBI) | compare |
| b2285 | nuoE | +0.8 | 2.1 | NADH dehydrogenase subunit E (NCBI) | compare |
| b2450 | yffS | +0.8 | 1.7 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b3180 | yhbY | +0.8 | 4.1 | predicted RNA-binding protein (NCBI) | compare |
| b2263 | yfbB | +0.8 | 2.8 | predicted peptidase (NCBI) | compare |
| b2597 | yfiA | +0.8 | 1.8 | cold shock protein associated with 30S ribosomal subunit (NCBI) | compare |
| b1150 | ymfR | +0.8 | 1.0 | e14 prophage; predicted protein (NCBI) | compare |
| b3057 | bacA | +0.8 | 5.0 | undecaprenyl pyrophosphate phosphatase (NCBI) | compare |
| b3388 | damX | +0.8 | 6.6 | hypothetical protein (NCBI) | compare |
| b2221 | atoD | +0.8 | 2.9 | acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (NCBI) | compare |
| b4174 | hflK | +0.8 | 5.0 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b2279 | nuoK | +0.8 | 1.3 | NADH dehydrogenase subunit K (NCBI) | compare |
| b2708 | gutQ | +0.7 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b4431 | rprA | +0.7 | 1.5 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b4301 | sgcE | +0.7 | 4.4 | ribulose-phosphate 3-epimerase (NCBI) | compare |
| b2906 | visC | +0.7 | 3.6 | hypothetical protein (NCBI) | compare |
| b3926 | glpK | +0.7 | 5.1 | glycerol kinase (NCBI) | compare |
| b1070 | flgN | +0.7 | 1.1 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b4527 | b1354 | +0.7 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b3181 | greA | +0.7 | 2.9 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b2289 | lrhA | +0.7 | 4.7 | DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes (NCBI) | compare |
| b0920 | ycbC | +0.7 | 3.3 | conserved inner membrane protein (NCBI) | compare |
| b2134 | pbpG | +0.7 | 4.2 | penicillin-binding protein 7 (VIMSS) | compare |
| b2683 | ygaH | +0.7 | 3.7 | predicted inner membrane protein (NCBI) | compare |
| b2492 | focB | +0.7 | 2.2 | predicted formate transporter (NCBI) | compare |
| b0212 | gloB | +0.7 | 2.3 | predicted hydroxyacylglutathione hydrolase (NCBI) | compare |
| b0991 | ymcE | +0.7 | 2.2 | cold shock gene (NCBI) | compare |
| b0428 | cyoE | +0.7 | 3.0 | protoheme IX farnesyltransferase (NCBI) | compare |
| b3398 | yrfF | +0.7 | 2.6 | predicted inner membrane protein (NCBI) | compare |
| b0348 | mhpB | +0.7 | 1.0 | 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (NCBI) | compare |
| b1143 | ymfI | +0.7 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b3009 | yghB | +0.7 | 4.1 | conserved inner membrane protein (NCBI) | compare |
| b1242 | ychE | +0.7 | 2.0 | predicted inner membrane protein (NCBI) | compare |
| b1846 | yebE | +0.7 | 2.2 | hypothetical protein (NCBI) | compare |
| b2911 | ssrS | +0.7 | 1.1 | 6S regulatory RNA (NCBI) | compare |
| b4692 | oweE | +0.7 | 2.0 | no description | compare |
| b1630 | rsxD | +0.7 | 3.4 | electron transport complex protein RnfD (NCBI) | compare |
| b1090 | plsX | +0.7 | 1.8 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b4631 | ykgQ | +0.7 | 0.7 | no description | compare |
| b1185 | dsbB | +0.7 | 1.8 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b1064 | grxB | +0.6 | 3.2 | glutaredoxin 2 (Grx2) (NCBI) | compare |
| b2618 | b2618 | +0.6 | 2.7 | orf, hypothetical protein (VIMSS) | compare |
| b1134 | ymfB | +0.6 | 1.2 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b2240 | glpT | +0.6 | 4.5 | sn-glycerol-3-phosphate transporter (NCBI) | compare |
| b0220 | ivy | +0.6 | 2.3 | inhibitor of vertebrate C-lysozyme (NCBI) | compare |
| b1067 | yceH | +0.6 | 2.8 | hypothetical protein (NCBI) | compare |
| b2432 | yfeY | +0.6 | 0.9 | hypothetical protein (NCBI) | compare |
| b1384 | feaR | +0.6 | 3.8 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1349 | recT | +0.6 | 3.0 | Rac prophage; recombination and repair protein (NCBI) | compare |
| b3258 | panF | +0.6 | 4.2 | sodium/pantothenate symporter (VIMSS) | compare |
| b2128 | yehW | +0.6 | 2.8 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b2195 | ccmG | +0.6 | 2.0 | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | compare |
| b1478 | adhP | +0.6 | 2.8 | alcohol dehydrogenase (VIMSS) | compare |
| b4656 | yjhY | +0.6 | 3.0 | no description | compare |
| b3500 | gor | +0.6 | 1.1 | glutathione reductase (NCBI) | compare |
| b3101 | yqjF | +0.6 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1671 | ydhX | +0.6 | 1.7 | predicted 4Fe-4S ferridoxin-type protein (RefSeq) | compare |
| b4370 | leuQ | +0.6 | 1.8 | tRNA-Leu (NCBI) | compare |
| b3611 | yibN | +0.6 | 3.0 | predicted rhodanese-related sulfurtransferase (NCBI) | compare |
| b2283 | nuoG | +0.6 | 3.6 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b2276 | nuoN | +0.6 | 2.3 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b2216 | rcsD | +0.6 | 3.9 | phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) | compare |
| b1520 | b1520 | +0.6 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1867 | yecD | +0.6 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b2145 | yeiS | +0.6 | 2.2 | predicted inner membrane protein (NCBI) | compare |
| b1731 | cedA | +0.6 | 2.0 | cell division modulator (RefSeq) | compare |
| b2659 | b2659 | +0.6 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b4093 | phnO | +0.6 | 3.3 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b2154 | yeiG | +0.6 | 1.4 | predicted esterase (NCBI) | compare |
| b2542 | hcaD | +0.6 | 2.7 | phenylpropionate dioxygenase, ferredoxin reductase subunit (NCBI) | compare |
| b3257 | yhdT | +0.6 | 2.0 | conserved inner membrane protein (NCBI) | compare |
| b1949 | fliQ | +0.6 | 0.9 | flagellar biosynthesis protein Q (NCBI) | compare |
| b0982 | yccY | +0.6 | 2.7 | putative phosphatase (VIMSS) | compare |
| b2682 | ygaZ | +0.6 | 2.3 | predicted transporter (NCBI) | compare |
| b0714 | nei | +0.6 | 2.0 | endonuclease VIII/ 5-formyluracil/5-hydroxymethyluracil DNA glycosylase (NCBI) | compare |
| b0845 | ybjJ | +0.6 | 3.3 | predicted transporter (NCBI) | compare |
| b4409 | blr | +0.6 | 2.6 | beta-lactam resistance membrane protein (NCBI) | compare |
| b3113 | yhaR | +0.6 | 2.9 | orf, hypothetical protein (VIMSS) | compare |
| b0791 | ybhQ | +0.6 | 1.9 | predicted inner membrane protein (NCBI) | compare |
| b2918 | argK | +0.6 | 2.3 | arginine/ornithine transport system ATPase (NCBI) | compare |
| b0310 | ykgH | +0.6 | 0.8 | predicted inner membrane protein (NCBI) | compare |
| b3844 | fre | +0.6 | 3.0 | NAD(P)H-flavin reductase (NCBI) | compare |
| b4595 | yciY | +0.6 | 1.0 | hypothetical protein (RefSeq) | compare |
| b0493 | ybbO | +0.6 | 3.1 | short chain dehydrogenase (NCBI) | compare |
| b0367 | tauC | +0.6 | 2.4 | taurine transporter subunit (NCBI) | compare |
| b1901 | araF | +0.6 | 2.1 | L-arabinose transporter subunit (NCBI) | compare |
| b1289 | ycjD | +0.6 | 2.0 | hypothetical protein (NCBI) | compare |
| b1919 | yedO | +0.6 | 1.8 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b1558 | cspF | +0.6 | 1.3 | Qin prophage; cold shock protein (NCBI) | compare |
| b1661 | cfa | +0.6 | 1.9 | cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) (NCBI) | compare |
| b1186 | nhaB | +0.6 | 3.0 | NhaB sodium/proton transporter (Katherine Huang) | compare |
| b4325 | yjiC | +0.6 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1917 | yecC | +0.6 | 1.9 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b4698 | mgrR | +0.6 | 1.3 | sRNA antisense regulator down regulates YgdQ and EptB, PhoPQ-regulated, Hfq-dependent; affects sensitivity to antimicrobial peptides (RefSeq) | compare |
| b2280 | nuoJ | +0.6 | 2.7 | NADH dehydrogenase subunit J (NCBI) | compare |
| b1553 | ydfP | +0.6 | 1.1 | Qin prophage; conserved protein (NCBI) | compare |
| b2350 | yfdG | +0.6 | 3.2 | CPS-53 (KpLE1) prophage; bactoprenol-linked glucose translocase (flippase) (NCBI) | compare |
| b1842 | holE | +0.6 | 0.9 | DNA polymerase III, theta subunit (NCBI) | compare |
| b2946 | yggJ | +0.5 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b3029 | ygiN | +0.5 | 1.1 | quinol monooxygenase (NCBI) | compare |
| b3871 | bipA | +0.5 | 3.8 | GTP-binding protein (NCBI) | compare |
| b1845 | ptrB | +0.5 | 3.0 | protease II (NCBI) | compare |
| b1321 | ycjX | +0.5 | 2.1 | conserved protein with nucleoside triphosphate hydrolase domain (NCBI) | compare |
| b0869 | ybjT | +0.5 | 2.9 | putative dTDP-glucose enzyme (VIMSS) | compare |
| b0303 | ykgI | +0.5 | 0.5 | orf, hypothetical protein (VIMSS) | compare |
| b1563 | relE | +0.5 | 1.0 | Qin prophage; toxin of the RelE-RelB toxin-antitoxin system (NCBI) | compare |
| b0418 | pgpA | +0.5 | 2.4 | phosphatidylglycerophosphatase A (NCBI) | compare |
| b0143 | pcnB | +0.5 | 2.8 | poly(A) polymerase I (VIMSS) | compare |
| b0881 | clpS | +0.5 | 0.9 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b2768 | ygcP | +0.5 | 1.2 | predicted anti-terminator regulatory protein (NCBI) | compare |
| b2836 | aas | +0.5 | 3.8 | 2-acyl-glycerophospho-ethanolamine acyltransferase (NCBI) | compare |
| b1565 | ydfV | +0.5 | 2.0 | Qin prophage; predicted protein (NCBI) | compare |
| b4558 | yifL | +0.5 | 2.3 | predicted lipoprotein (NCBI) | compare |
| b2835 | ygeD | +0.5 | 3.0 | predicted inner membrane protein (NCBI) | compare |
| b1248 | b1248 | +0.5 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b3962 | udhA | +0.5 | 2.9 | putative oxidoreductase (VIMSS) | compare |
| b1343 | dbpA | +0.5 | 2.3 | ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) | compare |
| b2061 | wzb | +0.5 | 1.1 | protein-tyrosine phosphatase (NCBI) | compare |
| b3425 | glpE | +0.5 | 2.6 | thiosulfate sulfurtransferase (NCBI) | compare |
| b3250 | mreC | +0.5 | 0.5 | cell wall structural complex MreBCD transmembrane component MreC (NCBI) | compare |
| b0384 | psiF | +0.5 | 1.6 | induced by phosphate starvation (VIMSS) | compare |
| b0594 | entE | +0.5 | 2.8 | 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex (NCBI) | compare |
| b1581 | rspA | +0.5 | 1.7 | predicted dehydratase (NCBI) | compare |
| b2448 | yffQ | +0.5 | 1.6 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b2725 | hycA | +0.5 | 1.9 | regulator of the transcriptional regulator FhlA (NCBI) | compare |
| b0906 | ycaP | +0.5 | 2.6 | conserved inner membrane protein (NCBI) | compare |
| b3465 | yhhF | +0.5 | 2.4 | predicted methyltransferase (NCBI) | compare |
| b4552 | yrhC | +0.5 | 0.5 | no description | compare |
| b4521 | ycgI | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b4176 | yjeT | +0.5 | 2.0 | conserved inner membrane protein (NCBI) | compare |
| b0015 | dnaJ | +0.5 | 3.1 | chaperone Hsp40, co-chaperone with DnaK (NCBI) | compare |
| b1627 | rsxA | +0.5 | 1.5 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b4513 | kdpF | +0.5 | 1.7 | potassium ion accessory transporter subunit (NCBI) | compare |
| b1475 | fdnH | +0.5 | 2.6 | formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible (NCBI) | compare |
| b1706 | ydiU | +0.5 | 2.8 | hypothetical protein (NCBI) | compare |
| b1152 | ymfP | +0.5 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b1220 | ychO | +0.5 | 1.3 | predicted invasin (RefSeq) | compare |