| | gene | name | fitness | t score | description | |
|---|
| b4237 | nrdG | -5.7 | -9.6 | anaerobic ribonucleotide reductase activating protein (NCBI) | compare |
| b4238 | nrdD | -5.4 | -16.1 | anaerobic ribonucleoside triphosphate reductase (NCBI) | compare |
| b0462 | acrB | -5.2 | -14.5 | multidrug efflux system protein (NCBI) | compare |
| b0463 | acrA | -5.0 | -10.2 | multidrug efflux system (NCBI) | compare |
| b3035 | tolC | -4.5 | -4.3 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b1085 | b1085 | -4.0 | -2.8 | orf, hypothetical protein (VIMSS) | compare |
| b1334 | fnr | -3.8 | -2.6 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b0623 | cspE | -3.8 | -2.2 | cold shock protein E (NCBI) | compare |
| b0902 | pflA | -3.7 | -8.6 | pyruvate formate lyase activating enzyme 1 (NCBI) | compare |
| b1476 | fdnI | -3.6 | -1.4 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b1765 | ydjA | -3.5 | -1.4 | predicted oxidoreductase (NCBI) | compare |
| b0903 | pflB | -3.2 | -13.5 | pyruvate formate lyase I (NCBI) | compare |
| b0990 | cspG | -2.9 | -2.0 | DNA-binding transcriptional regulator (NCBI) | compare |
| b0145 | dksA | -2.9 | -2.8 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b4603 | rseX | -2.8 | -1.1 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b1818 | manY | -2.7 | -3.0 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b1493 | gadB | -2.7 | -1.1 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b1273 | yciN | -2.7 | -1.2 | hypothetical protein (NCBI) | compare |
| b0053 | surA | -2.6 | -3.9 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b1361 | ydaW | -2.6 | -1.0 | orf, hypothetical protein (VIMSS) | compare |
| b2620 | smpB | -2.4 | -1.6 | SsrA-binding protein (NCBI) | compare |
| b1518 | lsrG | -2.4 | -1.8 | autoinducer-2 (AI-2) modifying protein LsrG (NCBI) | compare |
| b0239 | frsA | -2.4 | -6.3 | fermentation/respiration switch protein (NCBI) | compare |
| b2808 | gcvA | -2.4 | -3.2 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4025 | pgi | -2.4 | -8.7 | glucose-6-phosphate isomerase (NCBI) | compare |
| b0222 | lpcA | -2.3 | -3.1 | phosphoheptose isomerase (NCBI) | compare |
| b2329 | aroC | -2.2 | -5.6 | chorismate synthase (NCBI) | compare |
| b0014 | dnaK | -2.2 | -2.1 | molecular chaperone DnaK (NCBI) | compare |
| b3617 | kbl | -2.1 | -7.2 | 2-amino-3-ketobutyrate coenzyme A ligase (NCBI) | compare |
| b1104 | ycfL | -2.1 | -2.1 | hypothetical protein (NCBI) | compare |
| b0927 | ycbL | -2.1 | -3.3 | predicted metal-binding enzyme (NCBI) | compare |
| b1863 | ruvC | -2.1 | -1.4 | Holliday junction resolvase (NCBI) | compare |
| b4520 | ymgF | -2.0 | -1.4 | hypothetical protein (NCBI) | compare |
| b0605 | ahpC | -2.0 | -4.1 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b3619 | rfaD | -2.0 | -3.3 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b0560 | nohB | -2.0 | -2.0 | DLP12 prophage; DNA packaging protein (NCBI) | compare |
| b2181 | yejG | -2.0 | -4.4 | hypothetical protein (NCBI) | compare |
| b3164 | pnp | -1.9 | -2.9 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b0688 | pgm | -1.9 | -3.1 | phosphoglucomutase (NCBI) | compare |
| b1380 | ldhA | -1.9 | -2.4 | D-lactate dehydrogenase (NCBI) | compare |
| b3229 | sspA | -1.9 | -2.3 | stringent starvation protein A (NCBI) | compare |
| b2479 | gcvR | -1.9 | -4.7 | transcriptional regulation of gcv operon (VIMSS) | compare |
| b0113 | pdhR | -1.9 | -4.4 | transcriptional regulator of pyruvate dehydrogenase complex (NCBI) | compare |
| b0142 | folK | -1.9 | -0.7 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b4410 | ecnA | -1.9 | -1.5 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b3387 | dam | -1.9 | -9.5 | DNA adenine methylase (NCBI) | compare |
| b4529 | ydbJ | -1.9 | -1.0 | hypothetical protein (NCBI) | compare |
| b4702 | mgtL | -1.8 | -1.7 | regulatory leader peptide for mgtA (NCBI) | compare |
| b0237 | pepD | -1.8 | -7.0 | aminoacyl-histidine dipeptidase (peptidase D) (NCBI) | compare |
| b1164 | ycgZ | -1.8 | -1.7 | hypothetical protein (NCBI) | compare |
| b2501 | ppk | -1.8 | -7.8 | polyphosphate kinase (NCBI) | compare |
| b1259 | yciG | -1.8 | -1.0 | orf, hypothetical protein (VIMSS) | compare |
| b4201 | priB | -1.8 | -2.9 | primosomal replication protein N (NCBI) | compare |
| b0908 | aroA | -1.8 | -8.1 | 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) | compare |
| b3082 | ygjM | -1.8 | -1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1360 | ydaV | -1.8 | -3.1 | Rac prophage; predicted DNA replication protein (NCBI) | compare |
| b1533 | ydeD | -1.8 | -2.2 | orf, hypothetical protein (VIMSS) | compare |
| b4402 | yjjY | -1.8 | -0.9 | hypothetical protein (NCBI) | compare |
| b1567 | intK | -1.8 | -2.6 | Qin prophage; predicted protein (RefSeq) | compare |
| b1709 | btuD | -1.7 | -0.9 | vitamin B12-transporter ATPase (NCBI) | compare |
| b2576 | srmB | -1.7 | -2.6 | ATP-dependent RNA helicase (NCBI) | compare |
| b2450 | yffS | -1.7 | -1.8 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b3792 | wzxE | -1.7 | -6.1 | O-antigen translocase (NCBI) | compare |
| b3842 | rfaH | -1.7 | -5.4 | transcriptional activator RfaH (NCBI) | compare |
| b3443 | yrhA | -1.7 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b3616 | tdh | -1.7 | -5.3 | L-threonine 3-dehydrogenase (NCBI) | compare |
| b3609 | secB | -1.7 | -3.3 | export protein SecB (NCBI) | compare |
| b4426 | isrA | -1.7 | -2.2 | unknown RNA (NCBI) | compare |
| b2783 | chpR | -1.7 | -1.6 | antitoxin of the ChpA-ChpR toxin-antitoxin system (NCBI) | compare |
| b3237 | argR | -1.7 | -3.9 | arginine repressor (NCBI) | compare |
| b1865 | nudB | -1.7 | -1.5 | dATP pyrophosphohydrolase (NCBI) | compare |
| b4062 | soxS | -1.7 | -3.1 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3026 | qseC | -1.7 | -1.1 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b1293 | sapB | -1.6 | -1.6 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1291 | sapD | -1.6 | -1.5 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b3545 | proK | -1.6 | -1.8 | tRNA-Pro (NCBI) | compare |
| b3621 | rfaC | -1.6 | -4.7 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b2168 | fruK | -1.6 | -1.4 | 1-phosphofructokinase (NCBI) | compare |
| b1292 | sapC | -1.6 | -1.5 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1847 | yebF | -1.5 | -1.6 | predicted protein (RefSeq) | compare |
| b3052 | rfaE | -1.5 | -4.2 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b1676 | pykF | -1.5 | -3.2 | pyruvate kinase (NCBI) | compare |
| b3631 | rfaG | -1.5 | -9.5 | glucosyltransferase I (NCBI) | compare |
| b4557 | yidD | -1.5 | -3.3 | hypothetical protein (NCBI) | compare |
| b4505 | insX | -1.5 | -1.6 | predicted IS protein (RefSeq) | compare |
| b3931 | hslU | -1.5 | -7.5 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b3465 | yhhF | -1.4 | -4.5 | predicted methyltransferase (NCBI) | compare |
| b0357 | yaiN | -1.4 | -1.9 | putative alpha helix chain (VIMSS) | compare |
| b3032 | cpdA | -1.4 | -4.0 | cyclic 3',5'-adenosine monophosphate phosphodiesterase (NCBI) | compare |
| b1147 | ymfL | -1.4 | -2.2 | e14 prophage; predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b4203 | rplI | -1.4 | -3.4 | 50S ribosomal protein L9 (NCBI) | compare |
| b1531 | marA | -1.4 | -1.6 | multiple antibiotic resistance; transcriptional activator of defense systems (VIMSS) | compare |
| b0957 | ompA | -1.4 | -2.3 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b1954 | dsrA | -1.4 | -1.6 | regulatory antisense RNA (NCBI) | compare |
| b4655 | ythA | -1.4 | -1.2 | expressed protein (RefSeq) | compare |
| b0406 | tgt | -1.4 | -5.1 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b2369 | evgA | -1.3 | -0.9 | DNA-binding response regulator in two-component regulatory system with EvgS (NCBI) | compare |
| b3620 | rfaF | -1.3 | -4.6 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b2506 | yfgI | -1.3 | -1.7 | hypothetical protein (NCBI) | compare |
| b2189 | proL | -1.3 | -1.4 | tRNA-Pro (NCBI) | compare |
| b2330 | yfcB | -1.3 | -1.2 | putative adenine-specific methylase (VIMSS) | compare |
| b4178 | yjeB | -1.3 | -3.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3469 | zntA | -1.3 | -5.6 | zinc, cobalt and lead efflux system (NCBI) | compare |
| b0730 | mngR | -1.3 | -1.2 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b0238 | gpt | -1.3 | -2.7 | xanthine phosphoribosyltransferase (NCBI) | compare |
| b1573 | ydfC | -1.3 | -1.1 | Qin prophage; predicted protein (RefSeq) | compare |
| b4570 | lomR | -1.3 | -1.6 | no description | compare |
| b2363 | yfdT | -1.3 | -2.2 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b1358 | ydaT | -1.3 | -1.0 | Rac prophage; predicted protein (NCBI) | compare |
| b1950 | fliR | -1.3 | -1.7 | flagellar biosynthesis protein R (NCBI) | compare |
| b4152 | frdC | -1.3 | -2.4 | fumarate reductase subunit C (NCBI) | compare |
| b2553 | glnB | -1.3 | -2.8 | regulatory protein P-II for glutamine synthetase (NCBI) | compare |
| b1936 | intG | -1.3 | -0.8 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b1642 | slyA | -1.3 | -1.1 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b1175 | minD | -1.3 | -3.8 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b0386 | proC | -1.2 | -3.3 | pyrroline-5-carboxylate reductase (NCBI) | compare |
| b3790 | rffC | -1.2 | -3.6 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b2248 | yfaX | -1.2 | -1.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1861 | ruvA | -1.2 | -0.8 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b4701 | sokX | -1.2 | -0.9 | sok-related sRNA, function unknown (RefSeq) | compare |
| b0949 | uup | -1.2 | -4.1 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1804 | rnd | -1.2 | -3.2 | ribonuclease D (NCBI) | compare |
| b1557 | cspB | -1.2 | -1.6 | Qin prophage; cold shock protein (NCBI) | compare |
| b2689 | yqaA | -1.2 | -2.1 | conserved inner membrane protein (NCBI) | compare |
| b2376 | ypdI | -1.2 | -2.1 | predicted lipoprotein involved in colanic acid biosynthesis (NCBI) | compare |
| b4535 | yniD | -1.2 | -1.1 | predicted protein (RefSeq) | compare |
| b3226 | yhcK | -1.2 | -4.0 | putative FADA-type transcriptional regulator (VIMSS) | compare |
| b2266 | elaB | -1.2 | -2.2 | hypothetical protein (NCBI) | compare |
| b4503 | yafF | -1.2 | -0.6 | no description | compare |
| b0364 | yaiS | -1.2 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b0122 | yacC | -1.2 | -2.8 | orf, hypothetical protein (VIMSS) | compare |
| b3630 | rfaP | -1.2 | -5.9 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b4243 | yjgF | -1.2 | -3.9 | orf, hypothetical protein (VIMSS) | compare |
| b2136 | yohD | -1.2 | -1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1530 | marR | -1.2 | -4.9 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b3500 | gor | -1.2 | -1.3 | glutathione reductase (NCBI) | compare |
| b1572 | ydfB | -1.2 | -1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1344 | ydaO | -1.2 | -2.7 | predicted C32 tRNA thiolase (NCBI) | compare |
| b0660 | ybeZ | -1.2 | -3.0 | predicted protein with nucleoside triphosphate hydrolase domain (RefSeq) | compare |
| b4686 | yshB | -1.2 | -2.9 | expressed protein (RefSeq) | compare |
| b1236 | galU | -1.2 | -2.7 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b1686 | ydiI | -1.2 | -0.8 | hypothetical protein (NCBI) | compare |
| b4053 | alr | -1.1 | -6.0 | alanine racemase (NCBI) | compare |
| b3129 | sohA | -1.1 | -2.2 | predicted regulator (NCBI) | compare |
| b0499 | ylbH | -1.1 | -2.2 | conserved protein, rhs-like (RefSeq) | compare |
| b3649 | rpoZ | -1.1 | -1.9 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b1600 | mdtJ | -1.1 | -1.0 | multidrug efflux system transporter (NCBI) | compare |
| b3628 | rfaB | -1.1 | -5.6 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b1707 | ydiV | -1.1 | -2.4 | hypothetical protein (NCBI) | compare |
| b2567 | rnc | -1.1 | -0.7 | ribonuclease III (NCBI) | compare |
| b1862 | yebB | -1.1 | -2.2 | orf, hypothetical protein (VIMSS) | compare |
| b0263 | afuB | -1.1 | -1.7 | CP4-6 prophage; predicted ferric trasnporter subunit (RefSeq) | compare |
| b1103 | ycfF | -1.1 | -1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1920 | fliY | -1.1 | -1.2 | cystine transporter subunit (NCBI) | compare |
| b3916 | pfkA | -1.1 | -1.3 | 6-phosphofructokinase (NCBI) | compare |
| b2623 | yfjH | -1.1 | -3.5 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b4181 | yjfI | -1.1 | -2.3 | hypothetical protein (NCBI) | compare |
| b4068 | yjcH | -1.1 | -2.4 | required for glycolate transport, with actP (from data) | compare |
| b0989 | cspH | -1.1 | -1.0 | stress protein, member of the CspA-family (NCBI) | compare |
| b3932 | hslV | -1.1 | -5.0 | ATP-dependent protease peptidase subunit (NCBI) | compare |
| b3563 | yiaB | -1.1 | -2.4 | orf, hypothetical protein (VIMSS) | compare |
| b0739 | tolA | -1.1 | -2.0 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b2894 | xerD | -1.1 | -0.7 | site-specific tyrosine recombinase XerD (NCBI) | compare |
| b3627 | rfaI | -1.1 | -5.4 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b2157 | yeiE | -1.1 | -2.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1558 | cspF | -1.1 | -1.5 | Qin prophage; cold shock protein (NCBI) | compare |
| b4151 | frdD | -1.1 | -2.2 | fumarate reductase subunit D (NCBI) | compare |
| b0232 | yafN | -1.1 | -0.6 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b1332 | ynaJ | -1.0 | -0.5 | predicted inner membrane protein (NCBI) | compare |
| b2085 | b2085 | -1.0 | -2.4 | orf, hypothetical protein (VIMSS) | compare |
| b4676 | yoaK | -1.0 | -0.5 | expressed protein (RefSeq) | compare |
| b2209 | eco | -1.0 | -1.3 | ecotin precursor (NCBI) | compare |
| b1333 | uspE | -1.0 | -2.7 | stress-induced protein (NCBI) | compare |
| b0746 | valZ | -1.0 | -1.5 | tRNA-Val (NCBI) | compare |
| b3794 | rffM | -1.0 | -4.7 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b2637 | yfjT | -1.0 | -1.6 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b2424 | cysU | -1.0 | -2.0 | sulfate/thiosulfate transporter subunit (NCBI) | compare |
| b4191 | ulaR | -1.0 | -2.0 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2727 | hypB | -1.0 | -2.3 | GTP hydrolase involved in nickel liganding into hydrogenases (NCBI) | compare |
| b1217 | chaB | -1.0 | -0.7 | cation transport regulator (NCBI) | compare |
| b2071 | yegJ | -1.0 | -1.1 | hypothetical protein (NCBI) | compare |
| b4375 | prfC | -1.0 | -1.7 | peptide chain release factor 3 (NCBI) | compare |
| b2477 | nlpB | -1.0 | -2.0 | lipoprotein-34 (VIMSS) | compare |
| b2820 | recB | -1.0 | -0.7 | exonuclease V (RecBCD complex), beta subunit (NCBI) | compare |
| b4146 | yjeK | -1.0 | -0.7 | predicted lysine aminomutase (NCBI) | compare |
| b2498 | upp | -1.0 | -1.7 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b2314 | dedD | -1.0 | -1.8 | putative lipoprotein (VIMSS) | compare |
| b3784 | rfe | -1.0 | -5.8 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b0407 | yajC | -1.0 | -1.4 | preprotein translocase subunit YajC (NCBI) | compare |
| b0436 | tig | -1.0 | -3.8 | trigger factor (NCBI) | compare |
| b2910 | zapA | -1.0 | -3.0 | protein that localizes to the cytokinetic ring (NCBI) | compare |
| b2271 | yfbL | -1.0 | -3.6 | putative aminopeptidase (VIMSS) | compare |
| b1566 | flxA | -1.0 | -2.3 | Qin prophage; predicted protein (NCBI) | compare |
| b0759 | galE | -1.0 | -3.9 | UDP-galactose-4-epimerase (VIMSS) | compare |
| b2362 | yfdS | -0.9 | -3.1 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b1223 | narK | -0.9 | -3.0 | nitrate/nitrite transporter (NCBI) | compare |
| b2569 | lepA | -0.9 | -2.4 | GTP-binding protein LepA (NCBI) | compare |
| b1329 | b1329 | -0.9 | -3.0 | putative transport periplasmic protein (VIMSS) | compare |
| b1330 | ynaI | -0.9 | -2.3 | conserved inner membrane protein (NCBI) | compare |
| b2977 | glcG | -0.9 | -2.7 | hypothetical protein (NCBI) | compare |